| Literature DB >> 26870959 |
Xiao-Qing Li1,2, Ning Ma1, Xin-Gang Li3, Bo Wang1, Shu-Sen Sun4, Feng Gao1, Da-Peng Mo1, Li-Gang Song1, Xuan Sun1, Lian Liu1, Xing-Quan Zhao5, Yi-Long Wang5, Yong-Jun Wang5, Zhi-Gang Zhao3, Zhong-Rong Miao1.
Abstract
BACKGROUND ANDEntities:
Mesh:
Substances:
Year: 2016 PMID: 26870959 PMCID: PMC4752331 DOI: 10.1371/journal.pone.0148891
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Selected variants for aspirin and clopidogrel.
| Gene | Variant | Allele | SNP position | MAF in control | HWE |
|---|---|---|---|---|---|
| rs3213619 | A>G | 5' UTR | 0.044 | 1.000 | |
| rs1128503 | A>G | Exonic, (Gly412Gly) | 0.317 | 0.264 | |
| rs1045642 | A>G | Exonic, (lle1145lle) | 0.383 | 0.367 | |
| rs12248560 | C>T | 5' UTR | 0.007 | 1.000 | |
| rs4244285 | G>A | Exonic, (Pro227Pro) | 0.319 | 0.313 | |
| rs4986893 | G>A | Exonic, (Trp212null) | 0.046 | 1.000 | |
| rs3758580 | C>T | Exonic, (Val330Val) | 0.103 | 1.000 | |
| rs4086116 | C>T | Intronic | 0.107 | 0.141 | |
| rs2104543 | C>T | Other | 0.402 | 1.000 | |
| rs12772169 | C>T | Other | 0.395 | 1.000 | |
| rs1998591 | G>A | 3' UTG | 0.432 | 0.805 | |
| rs1042194 | G>T | 3' UTG | 0.321 | 0.574 | |
| rs662 | T>C | Exonic, (Gln192Arg) | 0.332 | 0.105 | |
| rs1968753 | A>G | Intronic | 0.398 | 0.365 | |
| rs8192950 | T>G | Intronic | 0.191 | 0.207 | |
| rs2046934 | G>A | Intronic | 0.181 | 0.121 | |
| rs6798347 | A>G | Intronic | 0.281 | 0.298 | |
| rs6801273 | C>T | Intronic | 0.411 | 0.521 | |
| rs6787801 | A>G | Intronic | 0.445 | 0.535 | |
| rs1330344 | C>T | Promoter | 0.367 | 0.897 | |
| rs10306114 | C>G | 5' Flanking | 0.066 | 0.610 | |
| rs659366 | C>T | Promoter | 0.507 | 0.902 |
*All allele are given on the positive chromosomal strand.
Clinical characteristics of patients with events and without events.
| Variable | Case (n = 39) | Control (n = 229) | |
|---|---|---|---|
| 62.90±7.78 | 62.97±9.14 | 0.963 | |
| 36 (92.3) | 192 (83.8) | 0.170 | |
| 11 (28.2) | 53 (23.1) | 0.493 | |
| 28 (71.8) | 176 (76.9) | 0.493 | |
| 25.30±3.10 | 24.96±3.60 | 0.574 | |
| 24 (61.5) | 163 (71.2) | 0.226 | |
| 12 (30.8) | 72 (31.4) | 0.933 | |
| 12 (30.8) | 89 (38.9) | 0.335 | |
| 5 (12.8) | 25 (10.9) | 0.727 | |
| 8 (20.5) | 47 (20.5) | 0.999 | |
| 0.476 | |||
| | 12 (30.8) | 94 (41.0) | - |
| | 18 (46.2) | 88 (38.4) | - |
| | 9 (23.1) | 47 (20.5) | - |
| 0.918 | |||
| | 20 (51.3) | 125 (54.6) | - |
| | 13 (33.3) | 73 (31.9) | - |
| | 6 (15.4) | 31 (13.5) | - |
| - | |||
| | 5 (12.8) | 0 | - |
| | 13 (33.3) | 0 | - |
| | 6 (15.4) | 0 | - |
| | 15 (38.5) | 0 | - |
Summary of SNPs detection and the results of statistical analysis.
| Gene | Variant | Fisher test, | Cochran-Armitage trend test, P-value | Logistic regression, OR, 95%CI | Power analysis |
|---|---|---|---|---|---|
| rs3213619 | 0.340 | 0.184 | 0.27, 0.04–2.10 | 0.170 | |
| rs1128503 | 0.191 | 0.177 | 1.39, 0.86–2.25 | 0.264 | |
| rs1045642 | 0.803 | 0.817 | 1.06, 0.66–1.71 | 0.057 | |
| rs12248560 | 0.472 | 0.559 | 1.96, 0.20–19.30 | 0.162 | |
| rs4244285 | 0.787 | 0.813 | 1.06, 0.64–1.78 | 0.057 | |
| rs4986893 | 1.000 | 0.760 | 0.82, 0.23–2.90 | 0.047 | |
| rs3758580 | 0.175 | 0.180 | 1.60, 0.80–3.20 | 0.299 | |
| rs4086116 | 0.130 | 0.149 | 1.59, 0.84–3.01 | 0.298 | |
| rs2104543 | 0.172 | 0.159 | 1.42, 0.87–2.31 | 0.301 | |
| rs12772169 | 0.136 | 0.124 | 1.46, 0.90–2.38 | 0.341 | |
| rs1998591 | 0.270 | 0.261 | 1.32, 0.81–2.15 | 0.207 | |
| rs1042194 | 0.694 | 0.719 | 1.10, 0.66–1.82 | 0.068 | |
| rs662 | 0.029 | 0.035 | 1.64, 1.03–2.62 | 0.517 | |
| rs1968753 | 0.900 | 0.877 | 1.04, 0.64–1.68 | 0.053 | |
| rs8192950 | 0.076 | 0.059 | 0.47, 0.21–1.04 | 0.493 | |
| rs2046934 | 0.041 | 0.021 | 2.01, 1.10–3.67 | 0.710 | |
| rs6798347 | 0.219 | 0.202 | 1.38, 0.84–2.27 | 0.248 | |
| rs6801273 | 0.212 | 0.188 | 0.71, 0.42–1.19 | 0.257 | |
| rs6787801 | 0.903 | 0.885 | 0.97, 0.60–1.55 | 0.051 | |
| rs1330344 | 0.017 | 0.014 | 1.85, 1.12–3.03 | 0.709 | |
| rs10306114 | 0.804 | 0.660 | 0.78, 0.26–2.36 | 0.057 | |
| rs659366 | 0.083 | 0.073 | 0.64, 0.39–1.05 | 0.434 |
*P-value < 0.05
Fig 1Linkage disequilibrium plot of selected SNP.
SNPs in CYP2C19, ABCB1, COX1, P2Y12, CYP2C18 and CES1 genes, respectively. The depth of red color presented the computed pair-wise D'. The values in the squares are D'.
The frequency of each haplotype within a block and the association of haplotype and clinical endpoint.
| Gene | Block | Haplotype Frequency | Case,Control Frequencies | |
|---|---|---|---|---|
| CCCG | 0.556 | 0.500, 0.566 | 0.280 | |
| TTTT | 0.326 | 0.344, 0.323 | 0.723 | |
| TTTG | 0.082 | 0.144, 0.071 | 0.032 | |
| CTCG | 0.034 | 0.013, 0.037 | 0.269 | |
| AT | 0.603 | 0.596, 0.604 | 0.895 | |
| AC | 0.217 | 0.290, 0.205 | 0.092 | |
| CC | 0.180 | 0.114, 0.191 | 0.101 | |
| GG | 0.436 | 0.395, 0.443 | 0.429 | |
| AA | 0.283 | 0.312, 0.278 | 0.538 | |
| AG | 0.274 | 0.252, 0.277 | 0.648 |
*P-value < 0.05
Multivariate logistic regression analysis of other drugs taken by the patients related to recurrent clinical events.
| Variables | β | SE | Wald χ2 | OR (95% CI) | |
|---|---|---|---|---|---|
| 0.395 | 0.374 | 1.116 | 0.291 | 1.485 (0.713–3.091) | |
| -0.092 | 0.387 | 0.057 | 0.812 | 0.912 (0.427–1.946) | |
| 0.294 | 0.382 | 0.594 | 0.441 | 1.342 (0.635–2.838) | |
| -2.031 | 0.386 | 27.716 | 0.000 | 0.131 |
*β: regression coefficient
#SE: standard error of regression coefficient.