Literature DB >> 26870559

Crystal structure of 3-(prop-2-en-1-yl)-1-{[(1E)-1,2,3,4-tetra-hydro-naphthalen-1-yl-idene]amino}-thio-urea.

Joel T Mague1, Shaaban K Mohamed2, Mehmet Akkurt3, Alaa A Hassan4, Ahmed T Abdel-Aziz4, Mustafa R Albayati5.   

Abstract

In the title compound, C14H17N3S, the dihedral angle between the planes of the benzene ring and the thio-semicarbazone group (r.m.s. deviation = 0.031 Å) is 8.45 (4)°. A short intra-molcular N-H⋯N contact is seen. In the crystal, weak N-H⋯S hydrogen bonds connect the mol-ecules into C(4) chains propagating in the [010] direction, with adjacent mol-ecules in the chain related by 21 screw-axis symmetry.

Entities:  

Keywords:  N—H⋯S hydrogen bond; crystal structure; thio­semicarbazone

Year:  2015        PMID: 26870559      PMCID: PMC4719931          DOI: 10.1107/S2056989015021076

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For a related structure and background to thio­semi­car­ba­zones, see: Mohamed et al. (2015 ▸). For further synthetic details, see: Mague et al. (2014 ▸).

Experimental

Crystal data

C14H17N3S M = 259.36 Monoclinic, a = 7.6665 (2) Å b = 8.5788 (2) Å c = 20.4072 (5) Å β = 91.794 (1)° V = 1341.51 (6) Å3 Z = 4 Cu Kα radiation μ = 2.02 mm−1 T = 150 K 0.20 × 0.19 × 0.16 mm

Data collection

Bruker D8 VENTURE PHOTON 100 CMOS diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2014 ▸) T min = 0.68, T max = 0.73 10141 measured reflections 2687 independent reflections 2486 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.031 wR(F 2) = 0.084 S = 1.07 2687 reflections 163 parameters H-atom parameters constrained Δρmax = 0.25 e Å−3 Δρmin = −0.24 e Å−3

Data collection: APEX2 (Bruker, 2014 ▸); cell refinement: SAINT (Bruker, 2014 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXT (Bruker, 2014 ▸); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015 ▸); molecular graphics: DIAMOND (Brandenburg & Putz, 2012 ▸); software used to prepare material for publication: SHELXTL (Bruker, 2014 ▸). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989015021076/hb7539sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015021076/hb7539Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015021076/hb7539Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015021076/hb7539fig1.tif The title mol­ecule with 50% probability displacement ellipsoids. Click here for additional data file. a . DOI: 10.1107/S2056989015021076/hb7539fig2.tif Packing viewed down the a axis. CCDC reference: 1435398 Additional supporting information: crystallographic information; 3D view; checkCIF report
C14H17N3SF(000) = 552
Mr = 259.36Dx = 1.284 Mg m3
Monoclinic, P21/nCu Kα radiation, λ = 1.54178 Å
a = 7.6665 (2) ÅCell parameters from 8207 reflections
b = 8.5788 (2) Åθ = 4.3–74.5°
c = 20.4072 (5) ŵ = 2.02 mm1
β = 91.794 (1)°T = 150 K
V = 1341.51 (6) Å3Block, colourless
Z = 40.20 × 0.19 × 0.16 mm
Bruker D8 VENTURE PHOTON 100 CMOS diffractometer2687 independent reflections
Radiation source: INCOATEC IµS micro–focus source2486 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.022
Detector resolution: 10.4167 pixels mm-1θmax = 74.5°, θmin = 4.3°
ω scansh = −8→9
Absorption correction: multi-scan (SADABS; Bruker, 2014)k = −10→10
Tmin = 0.68, Tmax = 0.73l = −21→25
10141 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.031Hydrogen site location: mixed
wR(F2) = 0.084H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0458P)2 + 0.3454P] where P = (Fo2 + 2Fc2)/3
2687 reflections(Δ/σ)max = 0.001
163 parametersΔρmax = 0.25 e Å3
0 restraintsΔρmin = −0.24 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. H-atoms attached to carbon were placed in calculated positions (C—H = 0.95 - 0.99 Å) while those attached to nitrogen were placed in locations derived from a difference map and their parameters adjusted to give N—H = 0.91 Å. All were included as riding contributions with isotropic displacement parameters 1.2 times those of the attached atoms.
xyzUiso*/Ueq
S10.48923 (4)0.32351 (4)0.80129 (2)0.03037 (11)
N10.24491 (13)0.48661 (13)0.73353 (5)0.0280 (2)
H1N0.22360.55540.70030.034*
N20.51325 (12)0.47130 (12)0.68903 (5)0.0239 (2)
H2N0.62720.44150.69110.029*
N30.44987 (12)0.56539 (11)0.63901 (4)0.0220 (2)
C1−0.0358 (2)0.27861 (18)0.69916 (8)0.0472 (4)
H1A0.05720.29010.66990.057*
H1B−0.13200.21310.68780.057*
C2−0.03150 (17)0.35274 (17)0.75504 (7)0.0348 (3)
H2−0.12770.33730.78260.042*
C30.10929 (16)0.45938 (16)0.78005 (6)0.0299 (3)
H3A0.05650.56060.79170.036*
H3B0.16280.41430.82060.036*
C40.40678 (15)0.43269 (13)0.73855 (5)0.0234 (2)
C50.55646 (14)0.60710 (13)0.59461 (5)0.0203 (2)
C60.74503 (15)0.55855 (14)0.59361 (6)0.0249 (2)
H6A0.75150.44830.57950.030*
H6B0.79640.56550.63860.030*
C70.85274 (15)0.65815 (15)0.54803 (6)0.0265 (3)
H7A0.86740.76390.56690.032*
H7B0.97000.61140.54400.032*
C80.76392 (16)0.66981 (15)0.48046 (6)0.0279 (3)
H8A0.83310.73860.45220.033*
H8B0.75880.56520.46000.033*
C90.58186 (15)0.73399 (13)0.48518 (5)0.0235 (2)
C100.50909 (18)0.82536 (14)0.43472 (6)0.0293 (3)
H100.57480.84470.39690.035*
C110.34410 (18)0.88813 (14)0.43851 (6)0.0323 (3)
H110.29710.94990.40360.039*
C120.24694 (17)0.86062 (14)0.49371 (6)0.0299 (3)
H120.13330.90370.49660.036*
C130.31603 (15)0.77037 (13)0.54449 (6)0.0244 (2)
H130.24940.75220.58220.029*
C140.48339 (15)0.70551 (13)0.54080 (5)0.0208 (2)
U11U22U33U12U13U23
S10.02807 (18)0.03706 (19)0.02591 (18)−0.00248 (11)−0.00050 (12)0.01231 (11)
N10.0248 (5)0.0385 (6)0.0208 (5)−0.0010 (4)0.0016 (4)0.0074 (4)
N20.0233 (5)0.0280 (5)0.0204 (5)−0.0003 (4)0.0011 (4)0.0048 (4)
N30.0247 (5)0.0240 (5)0.0173 (4)−0.0012 (4)−0.0001 (4)0.0013 (3)
C10.0498 (9)0.0378 (8)0.0528 (9)−0.0060 (7)−0.0182 (7)0.0063 (7)
C20.0252 (6)0.0413 (7)0.0378 (7)−0.0005 (5)−0.0005 (5)0.0176 (6)
C30.0288 (6)0.0410 (7)0.0203 (6)0.0011 (5)0.0056 (5)0.0035 (5)
C40.0259 (6)0.0247 (6)0.0196 (5)−0.0047 (4)0.0001 (4)−0.0001 (4)
C50.0228 (5)0.0206 (5)0.0176 (5)−0.0034 (4)−0.0004 (4)−0.0024 (4)
C60.0223 (5)0.0273 (6)0.0249 (6)−0.0018 (4)0.0000 (4)0.0021 (4)
C70.0216 (6)0.0329 (6)0.0250 (6)−0.0057 (5)0.0012 (5)−0.0015 (5)
C80.0267 (6)0.0362 (7)0.0209 (6)−0.0066 (5)0.0043 (5)−0.0025 (4)
C90.0278 (6)0.0230 (5)0.0198 (5)−0.0077 (4)0.0001 (4)−0.0018 (4)
C100.0389 (7)0.0298 (6)0.0192 (6)−0.0094 (5)−0.0003 (5)0.0019 (4)
C110.0450 (7)0.0239 (6)0.0272 (6)−0.0038 (5)−0.0098 (5)0.0041 (5)
C120.0315 (6)0.0237 (6)0.0339 (7)0.0025 (5)−0.0068 (5)−0.0013 (5)
C130.0263 (6)0.0233 (5)0.0235 (6)−0.0024 (4)0.0005 (4)−0.0016 (4)
C140.0238 (5)0.0198 (5)0.0186 (5)−0.0039 (4)−0.0014 (4)−0.0018 (4)
S1—C41.6928 (12)C6—H6A0.9900
N1—C41.3254 (16)C6—H6B0.9900
N1—C31.4487 (16)C7—C81.5220 (16)
N1—H1N0.9098C7—H7A0.9900
N2—C41.3597 (15)C7—H7B0.9900
N2—N31.3778 (13)C8—C91.5063 (17)
N2—H2N0.9098C8—H8A0.9900
N3—C51.2897 (15)C8—H8B0.9900
C1—C21.305 (2)C9—C101.3964 (17)
C1—H1A0.9500C9—C141.4042 (16)
C1—H1B0.9500C10—C111.379 (2)
C2—C31.4926 (19)C10—H100.9500
C2—H20.9500C11—C121.390 (2)
C3—H3A0.9900C11—H110.9500
C3—H3B0.9900C12—C131.3854 (17)
C5—C141.4811 (15)C12—H120.9500
C5—C61.5052 (16)C13—C141.4027 (16)
C6—C71.5249 (16)C13—H130.9500
C4—N1—C3125.63 (10)C8—C7—C6110.73 (10)
C4—N1—H1N115.4C8—C7—H7A109.5
C3—N1—H1N118.5C6—C7—H7A109.5
C4—N2—N3119.17 (10)C8—C7—H7B109.5
C4—N2—H2N119.7C6—C7—H7B109.5
N3—N2—H2N121.0H7A—C7—H7B108.1
C5—N3—N2117.81 (10)C9—C8—C7110.81 (10)
C2—C1—H1A120.0C9—C8—H8A109.5
C2—C1—H1B120.0C7—C8—H8A109.5
H1A—C1—H1B120.0C9—C8—H8B109.5
C1—C2—C3126.56 (14)C7—C8—H8B109.5
C1—C2—H2116.7H8A—C8—H8B108.1
C3—C2—H2116.7C10—C9—C14118.77 (11)
N1—C3—C2113.63 (11)C10—C9—C8120.51 (11)
N1—C3—H3A108.8C14—C9—C8120.71 (10)
C2—C3—H3A108.8C11—C10—C9121.58 (12)
N1—C3—H3B108.8C11—C10—H10119.2
C2—C3—H3B108.8C9—C10—H10119.2
H3A—C3—H3B107.7C10—C11—C12119.66 (11)
N1—C4—N2116.10 (10)C10—C11—H11120.2
N1—C4—S1125.31 (9)C12—C11—H11120.2
N2—C4—S1118.58 (9)C13—C12—C11119.94 (12)
N3—C5—C14116.47 (10)C13—C12—H12120.0
N3—C5—C6124.24 (10)C11—C12—H12120.0
C14—C5—C6119.26 (10)C12—C13—C14120.69 (11)
C5—C6—C7113.07 (10)C12—C13—H13119.7
C5—C6—H6A109.0C14—C13—H13119.7
C7—C6—H6A109.0C13—C14—C9119.35 (10)
C5—C6—H6B109.0C13—C14—C5120.78 (10)
C7—C6—H6B109.0C9—C14—C5119.87 (10)
H6A—C6—H6B107.8
C4—N2—N3—C5176.28 (10)C14—C9—C10—C110.25 (17)
C4—N1—C3—C2−109.16 (14)C8—C9—C10—C11−178.62 (11)
C1—C2—C3—N14.4 (2)C9—C10—C11—C120.07 (18)
C3—N1—C4—N2179.56 (11)C10—C11—C12—C13−0.07 (18)
C3—N1—C4—S1−1.23 (18)C11—C12—C13—C14−0.26 (18)
N3—N2—C4—N11.89 (16)C12—C13—C14—C90.58 (17)
N3—N2—C4—S1−177.38 (8)C12—C13—C14—C5−179.10 (10)
N2—N3—C5—C14178.78 (9)C10—C9—C14—C13−0.57 (16)
N2—N3—C5—C60.54 (16)C8—C9—C14—C13178.30 (10)
N3—C5—C6—C7−163.89 (11)C10—C9—C14—C5179.12 (10)
C14—C5—C6—C717.91 (14)C8—C9—C14—C5−2.02 (16)
C5—C6—C7—C8−50.50 (14)N3—C5—C14—C1310.37 (15)
C6—C7—C8—C956.66 (13)C6—C5—C14—C13−171.29 (10)
C7—C8—C9—C10147.83 (11)N3—C5—C14—C9−169.31 (10)
C7—C8—C9—C14−31.02 (15)C6—C5—C14—C99.03 (15)
D—H···AD—HH···AD···AD—H···A
N1—H1N···N30.912.172.6146 (13)109
N1—H1N···S1i0.912.823.4642 (11)129
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1N⋯N30.912.172.6146 (13)109
N1—H1N⋯S1i 0.912.823.4642 (11)129

Symmetry code: (i) .

  2 in total

1.  1-{[(Z)-Cyclo-pentyl-idene]amino}-3-phenyl-thio-urea.

Authors:  Joel T Mague; Shaaban K Mohamed; Mehmet Akkurt; Alaa A Hassan; Mustafa R Albayati
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-04-05

2.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

  2 in total

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