Literature DB >> 26870531

Crystal structure of 2-(thio-phen-3-yl)ethyl pyrene-1-carboxyl-ate.

Bianca X Valderrama-García1, Reyna Reyes-Martínez2, Simón Hernández-Ortega2, David Morales-Morales2, Ernesto Rivera1.   

Abstract

In the title compound, C23H16O2S, the thio-phene group is rotationally disordered into two fractions almost parallel to each other, with occupation factors of 0.523 (7) and 0.477 (7), and subtending dihedral angles of 10.5 (5) and 9.3 (5)°, respectively, to the thio-phene group. The mol-ecules are held together by weak C-H⋯O and C-H⋯π hydrogen bonds, producing a laminar arrangement, which are further connected in a perpendicular fashion by S⋯π contacts [S⋯centroid = 3.539 (8) and 3.497 (8) Å]. In spite of the presence of the entended pyrene group, the structure does not present any parallel π-π stacking inter-actions. The structure was refined as an inversion twin.

Entities:  

Keywords:  S⋯π contacts; crystal structure; excimers; exciplexes; hydrogen bonding; pyrene; thio­phene

Year:  2015        PMID: 26870531      PMCID: PMC4719884          DOI: 10.1107/S2056989015020873

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For optical and electronic properties of pyrene compounds, see: Hrdlovič & Lukáč (2000 ▸); Winnik (1993 ▸); Kim et al. (2008 ▸). For use of pyrenes as sensors, see: Basu & Rajam (2004 ▸); Chmela et al. (2005 ▸). For applications of thio­phenes, see: Perepichka et al. (2005 ▸); Abd-El-Aziz et al. (2013 ▸). For a previous report of meth­oxy­pyrene, see: Morales-Espinoza et al. (2015 ▸). For S⋯π inter­actions, see: Mooibroek et al. (2008 ▸).

Experimental

Crystal data

C23H16O2S M = 356.42 Orthorhombic, a = 12.020 (9) Å b = 7.576 (6) Å c = 18.521 (14) Å V = 1687 (2) Å3 Z = 4 Mo Kα radiation μ = 0.21 mm−1 T = 298 K 0.30 × 0.23 × 0.17 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2012 ▸) T min = ?, T max = ? 11964 measured reflections 3116 independent reflections 2546 reflections with I > 2σ(I) R int = 0.162

Refinement

R[F 2 > 2σ(F 2)] = 0.057 wR(F 2) = 0.148 S = 1.05 3116 reflections 256 parameters 56 restraints H-atom parameters constrained Δρmax = 0.19 e Å−3 Δρmin = −0.16 e Å−3 Absolute structure: Refined as an inversion twin. Absolute structure parameter: 0.3 (2)

Data collection: APEX2 (Bruker, 2012 ▸); cell refinement: SAINT (Bruker, 2012 ▸); data reduction: SAINT (Bruker, 2012 ▸); program(s) used to solve structure: SHELXS97 (Sheldrick 2008 ▸); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015 ▸); molecular graphics: SHELXTL (Sheldrick 2008 ▸); software used to prepare material for publication: PLATON (Spek, 2009 ▸) and DIAMOND (Brandenburg, 2006 ▸). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S2056989015020873/bg2569sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015020873/bg2569Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015020873/bg2569Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015020873/bg2569fig1.tif The mol­ecular structure of the title compound, showing the atom labelling. Displacement ellipsoids are drawn at the 30% probability level. Only the major fraction of the disordered thio­phene has been drawn. Click here for additional data file. Cg . DOI: 10.1107/S2056989015020873/bg2569fig2.tif A partial view of crystal packing of the title compound showing C—H⋯O and C—H⋯Cg inter­actions, drawn as dashed lines. Only H atoms involved in hydrogen bonding have been included for clarity. Click here for additional data file. . DOI: 10.1107/S2056989015020873/bg2569fig3.tif A view of the crystal packing of the title compound, with the hydrogen bonds shown as dashed lines. Only H atoms involved in hydrogen bonding have been included. Click here for additional data file. . DOI: 10.1107/S2056989015020873/bg2569fig4.tif Representation of the S⋯π inter­action (Only major fraction of the disordered thio­phene group). Hydrogen atosm omitted. CCDC reference: 1435021 Additional supporting information: crystallographic information; 3D view; checkCIF report
C23H16O2SF(000) = 744
Mr = 356.42Dx = 1.404 Mg m3
Orthorhombic, Pna21Mo Kα radiation, λ = 0.71073 Å
a = 12.020 (9) Åθ = 2.2–25.6°
b = 7.576 (6) ŵ = 0.21 mm1
c = 18.521 (14) ÅT = 298 K
V = 1687 (2) Å3Prism, yellow
Z = 40.30 × 0.23 × 0.17 mm
Bruker APEXII CCD diffractometer2546 reflections with I > 2σ(I)
φ and ω scansRint = 0.162
Absorption correction: multi-scan (SADABS; Bruker, 2012)θmax = 25.6°, θmin = 2.2°
h = −14→14
11964 measured reflectionsk = −9→8
3116 independent reflectionsl = −22→22
Refinement on F2H-atom parameters constrained
Least-squares matrix: fullw = 1/[σ2(Fo2) + (0.0753P)2 + 0.2852P] where P = (Fo2 + 2Fc2)/3
R[F2 > 2σ(F2)] = 0.057(Δ/σ)max < 0.001
wR(F2) = 0.148Δρmax = 0.19 e Å3
S = 1.05Δρmin = −0.16 e Å3
3116 reflectionsExtinction correction: SHELXL2014 (Sheldrick, 2015), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
256 parametersExtinction coefficient: 0.014 (3)
56 restraintsAbsolute structure: Refined as an inversion twin.
Hydrogen site location: inferred from neighbouring sitesAbsolute structure parameter: 0.3 (2)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refined as a 2-component inversion twin.
xyzUiso*/UeqOcc. (<1)
O10.4023 (3)0.3325 (5)0.6430 (2)0.0658 (10)
O20.4120 (3)0.0607 (4)0.59746 (17)0.0510 (8)
C10.2701 (3)0.2387 (6)0.5549 (2)0.0420 (10)
C20.1998 (4)0.0944 (7)0.5482 (3)0.0500 (11)
H20.2155−0.00850.57360.060*
C30.1074 (3)0.1005 (6)0.5046 (3)0.0492 (11)
H30.05980.00390.50250.059*
C3A0.0849 (3)0.2482 (6)0.4641 (2)0.0440 (10)
C3B0.1558 (3)0.3963 (5)0.4684 (2)0.0390 (9)
C4−0.0076 (4)0.2540 (6)0.4150 (3)0.0523 (12)
H4−0.05510.15750.41150.063*
C5−0.0260 (4)0.3965 (8)0.3746 (3)0.0552 (12)
H5−0.08680.39720.34350.066*
C5A0.0444 (4)0.5480 (7)0.3774 (2)0.0490 (11)
C5B0.1362 (3)0.5460 (6)0.4248 (2)0.0434 (10)
C60.0274 (5)0.6961 (8)0.3344 (3)0.0630 (14)
H6−0.03420.70040.30410.076*
C70.0992 (5)0.8348 (8)0.3360 (3)0.0705 (15)
H70.08720.93090.30570.085*
C80.1889 (5)0.8350 (7)0.3816 (3)0.0622 (13)
H80.23680.93120.38220.075*
C8A0.2087 (4)0.6929 (6)0.4269 (2)0.0486 (11)
C90.2985 (4)0.6875 (6)0.4764 (3)0.0507 (11)
H90.34590.78430.47950.061*
C100.3174 (4)0.5475 (6)0.5188 (3)0.0485 (10)
H100.37660.55100.55110.058*
C10A0.2495 (3)0.3931 (6)0.5161 (2)0.0408 (9)
C110.3678 (4)0.2211 (6)0.6034 (3)0.0477 (10)
C120.5016 (4)0.0193 (6)0.6460 (3)0.0521 (11)
H12A0.47620.02470.69570.063*
H12B0.56220.10270.64000.063*
C130.5397 (4)−0.1636 (6)0.6279 (3)0.0537 (11)
H13A0.4753−0.24060.62550.064*
H13B0.5739−0.16230.58040.064*
C140.6204 (3)−0.2380 (6)0.6806 (2)0.0450 (9)
C150.7168 (4)−0.1566 (7)0.7033 (3)0.0582 (12)
H150.7400−0.04710.68640.070*
C160.6081 (4)−0.4007 (7)0.7125 (3)0.0553 (11)
H160.5479−0.47330.70170.066*
S10.7874 (4)−0.2729 (6)0.7637 (3)0.0658 (13)0.523 (7)
C170.6862 (17)−0.450 (3)0.7596 (15)0.066 (4)0.523 (7)
H170.6883−0.55540.78540.079*0.523 (7)
S1A0.7088 (5)−0.4534 (8)0.7678 (4)0.0682 (16)0.477 (7)
C17A0.782 (2)−0.250 (3)0.7479 (15)0.071 (5)0.477 (7)
H17A0.8515−0.21730.76530.085*0.477 (7)
U11U22U33U12U13U23
O10.070 (2)0.0563 (19)0.071 (2)0.0105 (17)−0.0173 (18)−0.0139 (18)
O20.0506 (16)0.0516 (16)0.0507 (16)0.0079 (14)−0.0132 (14)−0.0026 (15)
C10.040 (2)0.047 (2)0.039 (2)0.0071 (18)0.0023 (18)−0.0015 (18)
C20.049 (3)0.048 (3)0.053 (3)0.000 (2)0.010 (2)0.005 (2)
C30.042 (2)0.049 (2)0.056 (3)−0.0065 (19)0.001 (2)−0.002 (2)
C3A0.038 (2)0.050 (2)0.044 (2)−0.0021 (17)0.0097 (18)−0.0046 (19)
C3B0.0375 (19)0.043 (2)0.037 (2)0.0057 (16)0.0066 (17)−0.0062 (17)
C40.037 (2)0.066 (3)0.054 (3)−0.006 (2)0.0048 (19)−0.007 (2)
C50.044 (2)0.077 (3)0.044 (2)0.006 (2)−0.006 (2)−0.007 (2)
C5A0.049 (2)0.061 (3)0.037 (2)0.014 (2)0.0033 (19)−0.005 (2)
C5B0.046 (2)0.050 (2)0.0343 (18)0.0089 (19)0.0069 (18)−0.0044 (19)
C60.073 (3)0.070 (3)0.045 (3)0.019 (3)−0.008 (2)−0.001 (2)
C70.103 (4)0.056 (3)0.052 (3)0.018 (3)−0.005 (3)0.005 (2)
C80.080 (3)0.049 (3)0.058 (3)0.003 (2)0.007 (3)0.005 (2)
C8A0.054 (3)0.045 (2)0.046 (2)0.0068 (19)0.010 (2)−0.004 (2)
C90.049 (2)0.043 (2)0.060 (3)−0.0017 (19)0.004 (2)−0.003 (2)
C100.043 (2)0.048 (3)0.054 (2)0.0007 (19)0.001 (2)−0.006 (2)
C10A0.0352 (19)0.046 (2)0.041 (2)0.0034 (17)0.0052 (17)−0.0051 (18)
C110.046 (2)0.050 (2)0.047 (2)0.0033 (19)0.001 (2)0.000 (2)
C120.053 (2)0.053 (2)0.051 (3)0.004 (2)−0.010 (2)0.002 (2)
C130.056 (2)0.056 (3)0.049 (2)0.005 (2)−0.006 (2)0.003 (2)
C140.0417 (17)0.0518 (19)0.041 (2)0.0043 (14)0.0039 (16)0.0031 (16)
C150.0474 (19)0.062 (2)0.065 (3)−0.0019 (17)−0.0052 (19)0.010 (2)
C160.056 (2)0.055 (2)0.055 (2)−0.0008 (17)−0.002 (2)0.0091 (18)
S10.0549 (17)0.071 (2)0.071 (3)0.0106 (14)−0.0107 (16)0.0112 (17)
C170.065 (5)0.070 (5)0.063 (7)0.004 (4)−0.009 (5)0.011 (5)
S1A0.069 (3)0.067 (2)0.068 (3)0.0100 (18)−0.016 (2)0.0109 (19)
C17A0.063 (5)0.073 (5)0.076 (10)0.007 (4)−0.014 (6)0.012 (6)
O1—C111.193 (6)C8—C8A1.386 (7)
O2—C111.330 (5)C8—H80.9300
O2—C121.438 (5)C8A—C91.417 (6)
C1—C21.388 (7)C9—C101.339 (7)
C1—C10A1.395 (6)C9—H90.9300
C1—C111.484 (6)C10—C10A1.427 (7)
C2—C31.373 (6)C10—H100.9300
C2—H20.9300C12—C131.498 (7)
C3—C3A1.375 (7)C12—H12A0.9700
C3—H30.9300C12—H12B0.9700
C3A—C3B1.411 (6)C13—C141.488 (6)
C3A—C41.437 (7)C13—H13A0.9700
C3B—C5B1.412 (6)C13—H13B0.9700
C3B—C10A1.432 (6)C14—C161.375 (6)
C4—C51.332 (7)C14—C151.378 (6)
C4—H40.9300C15—C17A1.341 (19)
C5—C5A1.427 (7)C15—S11.656 (6)
C5—H50.9300C15—H150.9300
C5A—C61.391 (7)C16—C171.334 (19)
C5A—C5B1.409 (6)C16—S1A1.635 (6)
C5B—C8A1.413 (7)C16—H160.9300
C6—C71.360 (9)S1—C171.814 (16)
C6—H60.9300C17—H170.9300
C7—C81.369 (8)S1A—C17A1.810 (17)
C7—H70.9300C17A—H17A0.9300
C11—O2—C12116.5 (3)C8A—C9—H9119.0
C2—C1—C10A120.4 (4)C9—C10—C10A122.1 (4)
C2—C1—C11117.7 (4)C9—C10—H10118.9
C10A—C1—C11121.9 (4)C10A—C10—H10118.9
C3—C2—C1121.3 (4)C1—C10A—C10124.5 (4)
C3—C2—H2119.4C1—C10A—C3B118.2 (4)
C1—C2—H2119.4C10—C10A—C3B117.2 (4)
C2—C3—C3A120.5 (4)O1—C11—O2123.9 (4)
C2—C3—H3119.7O1—C11—C1125.7 (4)
C3A—C3—H3119.7O2—C11—C1110.4 (4)
C3—C3A—C3B119.9 (4)O2—C12—C13106.9 (4)
C3—C3A—C4121.5 (4)O2—C12—H12A110.3
C3B—C3A—C4118.6 (4)C13—C12—H12A110.3
C3A—C3B—C5B120.4 (4)O2—C12—H12B110.3
C3A—C3B—C10A119.7 (4)C13—C12—H12B110.3
C5B—C3B—C10A119.9 (4)H12A—C12—H12B108.6
C5—C4—C3A120.6 (4)C14—C13—C12113.7 (4)
C5—C4—H4119.7C14—C13—H13A108.8
C3A—C4—H4119.7C12—C13—H13A108.8
C4—C5—C5A122.2 (4)C14—C13—H13B108.8
C4—C5—H5118.9C12—C13—H13B108.8
C5A—C5—H5118.9H13A—C13—H13B107.7
C6—C5A—C5B118.7 (5)C16—C14—C15111.2 (4)
C6—C5A—C5122.7 (5)C16—C14—C13123.4 (4)
C5B—C5A—C5118.6 (4)C15—C14—C13125.4 (4)
C5A—C5B—C3B119.7 (4)C17A—C15—C14116.2 (10)
C5A—C5B—C8A119.5 (4)C14—C15—S1113.5 (4)
C3B—C5B—C8A120.9 (4)C14—C15—H15123.3
C7—C6—C5A121.2 (5)S1—C15—H15123.3
C7—C6—H6119.4C17—C16—C14117.1 (10)
C5A—C6—H6119.4C14—C16—S1A114.1 (4)
C6—C7—C8120.9 (5)C17—C16—H16121.4
C6—C7—H7119.6C14—C16—H16121.4
C8—C7—H7119.6C15—S1—C1791.3 (8)
C7—C8—C8A120.5 (5)C16—C17—S1106.9 (14)
C7—C8—H8119.7C16—C17—H17126.5
C8A—C8—H8119.7S1—C17—H17126.5
C8—C8A—C5B119.2 (4)C16—S1A—C17A91.4 (8)
C8—C8A—C9123.0 (5)C15—C17A—S1A106.9 (14)
C5B—C8A—C9117.8 (4)C15—C17A—H17A126.5
C10—C9—C8A122.0 (4)S1A—C17A—H17A126.5
C10—C9—H9119.0
C10A—C1—C2—C3−1.3 (6)C2—C1—C10A—C10−179.4 (4)
C11—C1—C2—C3179.7 (4)C11—C1—C10A—C10−0.4 (6)
C1—C2—C3—C3A2.7 (7)C2—C1—C10A—C3B−1.4 (6)
C2—C3—C3A—C3B−1.4 (6)C11—C1—C10A—C3B177.6 (4)
C2—C3—C3A—C4176.4 (4)C9—C10—C10A—C1174.9 (4)
C3—C3A—C3B—C5B177.4 (4)C9—C10—C10A—C3B−3.1 (6)
C4—C3A—C3B—C5B−0.5 (5)C3A—C3B—C10A—C12.7 (5)
C3—C3A—C3B—C10A−1.3 (6)C5B—C3B—C10A—C1−176.0 (4)
C4—C3A—C3B—C10A−179.2 (4)C3A—C3B—C10A—C10−179.2 (4)
C3—C3A—C4—C5−177.9 (4)C5B—C3B—C10A—C102.1 (5)
C3B—C3A—C4—C5−0.1 (6)C12—O2—C11—O14.5 (7)
C3A—C4—C5—C5A0.4 (7)C12—O2—C11—C1−174.8 (4)
C4—C5—C5A—C6178.7 (5)C2—C1—C11—O1−140.3 (5)
C4—C5—C5A—C5B−0.2 (6)C10A—C1—C11—O140.7 (7)
C6—C5A—C5B—C3B−179.4 (4)C2—C1—C11—O238.9 (5)
C5—C5A—C5B—C3B−0.4 (6)C10A—C1—C11—O2−140.0 (4)
C6—C5A—C5B—C8A−0.6 (6)C11—O2—C12—C13−178.3 (4)
C5—C5A—C5B—C8A178.3 (4)O2—C12—C13—C14−170.9 (4)
C3A—C3B—C5B—C5A0.8 (5)C12—C13—C14—C16128.8 (5)
C10A—C3B—C5B—C5A179.4 (4)C12—C13—C14—C15−52.1 (6)
C3A—C3B—C5B—C8A−178.0 (4)C16—C14—C15—C17A3.1 (17)
C10A—C3B—C5B—C8A0.7 (6)C13—C14—C15—C17A−176.1 (17)
C5B—C5A—C6—C72.1 (7)C16—C14—C15—S1−1.9 (6)
C5—C5A—C6—C7−176.8 (5)C13—C14—C15—S1178.9 (5)
C5A—C6—C7—C8−2.0 (8)C15—C14—C16—C171.6 (16)
C6—C7—C8—C8A0.4 (8)C13—C14—C16—C17−179.2 (16)
C7—C8—C8A—C5B1.0 (7)C15—C14—C16—S1A0.1 (6)
C7—C8—C8A—C9−178.5 (5)C13—C14—C16—S1A179.3 (5)
C5A—C5B—C8A—C8−0.9 (6)C14—C15—S1—C171.3 (11)
C3B—C5B—C8A—C8177.9 (4)C14—C16—C17—S1−1 (2)
C5A—C5B—C8A—C9178.7 (4)C15—S1—C17—C16−0.4 (18)
C3B—C5B—C8A—C9−2.6 (6)C14—C16—S1A—C17A−2.2 (12)
C8—C8A—C9—C10−178.8 (5)C14—C15—C17A—S1A−5 (2)
C5B—C8A—C9—C101.7 (6)C16—S1A—C17A—C153.8 (19)
C8A—C9—C10—C10A1.2 (7)
D—H···AD—HH···AD···AD—H···A
C16—H16···O1i0.932.553.448 (6)161
C13—H13B···Cg3ii0.972.863.776 (5)155
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C16—H16⋯O1i 0.932.553.448 (6)161
C13—H13BCg3ii 0.972.863.776 (5)155

Symmetry codes: (i) ; (ii) .

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