Literature DB >> 26870522

Crystal structure of 2-[2-phenyl-1-(phenyl-sulfon-yl)eth-yl]-1-phenyl-sulfonyl-1H-indole.

M Umadevi1, Potharaju Raju2, R Yamuna3, Arasambattu K Mohanakrishnan2, G Chakkaravarthi4.   

Abstract

In the title compound, C28H23NO4S2, the indole ring system (r.m.s. deviation = 0.007 Å) subtends dihedral angles of 78.69 (13) and 38.97 (13)° with the planes of the N- and C-bonded sulfonyl-benzene rings, respectively, and these two benzene rings are inclined to each other at an angle of 65.45 (16)°. The methyl-ene-linked phenyl ring is twisted at an angle of 81.80 (13)° from the indole ring. The mol-ecular structure features two short intra-molecular C-H⋯O contacts, which both generate S(6) rings. In the crystal, mol-ecules are linked by C-H⋯O hydrogen bonds and C-H⋯π inter-actions, generating a three-dimensional network.

Entities:  

Keywords:  C—H⋯π inter­actions; crystal structure; hydrogen bonding; indole

Year:  2015        PMID: 26870522      PMCID: PMC4719875          DOI: 10.1107/S2056989015019428

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For the biological activity of indole derivatives, see: Chen et al. (2015 ▸); Ferro et al. (2015 ▸); Parrino et al. (2015 ▸); Ma et al. (2015 ▸). For a related structure, see: Umadevi et al. (2015 ▸).

Experimental

Crystal data

C28H23NO4S2 M = 501.59 Triclinic, a = 9.7485 (6) Å b = 10.4930 (6) Å c = 12.2879 (6) Å α = 94.479 (3)° β = 96.926 (3)° γ = 102.253 (3)° V = 1212.36 (12) Å3 Z = 2 Mo Kα radiation μ = 0.26 mm−1 T = 295 K 0.28 × 0.24 × 0.22 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▸) T min = 0.932, T max = 0.946 28630 measured reflections 5104 independent reflections 3744 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.109 S = 1.07 5104 reflections 316 parameters H-atom parameters constrained Δρmax = 0.34 e Å−3 Δρmin = −0.58 e Å−3

Data collection: APEX2 (Bruker, 2004 ▸); cell refinement: SAINT (Bruker, 2004 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▸); molecular graphics: PLATON (Spek, 2009 ▸); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008 ▸) and PLATON. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989015019428/hb7517sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015019428/hb7517Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015019428/hb7517Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015019428/hb7517fig1.tif The mol­ecular structure of the title compound, with displacement ellipsoids drawn at the 30% probability level. Click here for additional data file. a . DOI: 10.1107/S2056989015019428/hb7517fig2.tif The crystal packing of the title compound, viewed along the a axis. The C—H⋯O hydrogen bonds are shown as dashed lines (see Table 1). H atoms not involved in these inter­actions have been omitted for clarity. CCDC reference: 1431246 Additional supporting information: crystallographic information; 3D view; checkCIF report
C28H23NO4S2Z = 2
Mr = 501.59F(000) = 524
Triclinic, P1Dx = 1.374 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 9.7485 (6) ÅCell parameters from 9872 reflections
b = 10.4930 (6) Åθ = 2.2–26.6°
c = 12.2879 (6) ŵ = 0.26 mm1
α = 94.479 (3)°T = 295 K
β = 96.926 (3)°Block, colourless
γ = 102.253 (3)°0.28 × 0.24 × 0.22 mm
V = 1212.36 (12) Å3
Bruker Kappa APEXII CCD diffractometer5104 independent reflections
Radiation source: fine-focus sealed tube3744 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.030
ω and φ scanθmax = 26.8°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −12→12
Tmin = 0.932, Tmax = 0.946k = −13→13
28630 measured reflectionsl = −15→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.109H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0176P)2 + 1.3407P] where P = (Fo2 + 2Fc2)/3
5104 reflections(Δ/σ)max < 0.001
316 parametersΔρmax = 0.34 e Å3
0 restraintsΔρmin = −0.58 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.7800 (2)0.2579 (2)0.49099 (18)0.0381 (5)
C20.7195 (3)0.1253 (3)0.4812 (2)0.0536 (7)
H20.70280.07540.41300.064*
C30.6844 (4)0.0681 (3)0.5743 (3)0.0672 (8)
H30.6431−0.02100.56900.081*
C40.7100 (4)0.1417 (4)0.6744 (2)0.0721 (10)
H40.68710.10240.73700.087*
C50.7693 (4)0.2735 (4)0.6827 (2)0.0719 (10)
H50.78560.32290.75110.086*
C60.8052 (3)0.3336 (3)0.5911 (2)0.0551 (7)
H60.84540.42300.59670.066*
C70.5685 (2)0.2997 (2)0.28275 (18)0.0364 (5)
C80.5302 (3)0.3979 (3)0.3462 (2)0.0565 (7)
H80.59730.46110.39310.068*
C90.3882 (4)0.3974 (3)0.3363 (3)0.0703 (9)
H90.35850.46150.37820.084*
C100.2879 (3)0.3042 (4)0.2659 (3)0.0677 (9)
H100.19280.30730.26130.081*
C110.3263 (3)0.2080 (3)0.2032 (2)0.0553 (7)
H110.25860.14600.15580.066*
C120.4692 (2)0.2047 (2)0.21191 (19)0.0391 (5)
C130.5447 (2)0.1211 (2)0.15991 (19)0.0395 (5)
H130.50400.04960.10800.047*
C140.6838 (2)0.1612 (2)0.19720 (17)0.0321 (5)
C150.8030 (3)0.1136 (2)0.15503 (18)0.0372 (5)
H150.88800.14400.20970.045*
C160.7758 (3)−0.0364 (2)0.1323 (2)0.0487 (6)
H16A0.6854−0.06900.08570.058*
H16B0.8492−0.05920.09300.058*
C170.7744 (3)−0.1007 (2)0.2368 (2)0.0464 (6)
C180.8982 (3)−0.0935 (3)0.3066 (3)0.0713 (9)
H180.9838−0.04850.28830.086*
C190.8969 (4)−0.1517 (4)0.4026 (3)0.0884 (12)
H190.9814−0.14450.44920.106*
C200.7738 (5)−0.2196 (4)0.4301 (3)0.0833 (11)
H200.7741−0.26100.49430.100*
C210.6501 (4)−0.2271 (3)0.3636 (3)0.0746 (10)
H210.5652−0.27190.38320.089*
C220.6499 (3)−0.1682 (3)0.2671 (2)0.0588 (7)
H220.5646−0.17420.22180.071*
C230.8138 (3)0.3404 (2)0.03825 (19)0.0419 (6)
C240.9082 (3)0.4365 (3)0.1084 (2)0.0544 (7)
H240.98660.41760.14940.065*
C250.8843 (4)0.5624 (3)0.1169 (3)0.0716 (9)
H250.94500.62800.16610.086*
C260.7725 (4)0.5902 (3)0.0535 (3)0.0803 (11)
H260.75800.67510.05890.096*
C270.6815 (4)0.4954 (4)−0.0176 (3)0.0806 (10)
H270.60670.5161−0.06190.097*
C280.7000 (3)0.3684 (3)−0.0244 (3)0.0619 (8)
H280.63590.3025−0.07100.074*
N10.70401 (19)0.27497 (18)0.27447 (14)0.0333 (4)
O10.8486 (2)0.46961 (17)0.39621 (15)0.0570 (5)
O20.95665 (17)0.28679 (19)0.34733 (14)0.0507 (5)
O30.7321 (3)0.10587 (19)−0.05895 (15)0.0762 (7)
O40.9842 (3)0.1806 (2)0.0183 (2)0.0821 (8)
S10.83746 (6)0.33264 (6)0.37640 (5)0.03940 (15)
S20.83884 (8)0.17893 (6)0.02663 (5)0.04973 (19)
U11U22U33U12U13U23
C10.0340 (12)0.0513 (14)0.0312 (11)0.0156 (11)0.0035 (9)0.0023 (10)
C20.0675 (19)0.0548 (16)0.0382 (14)0.0107 (14)0.0107 (13)0.0056 (12)
C30.077 (2)0.072 (2)0.0570 (18)0.0150 (17)0.0192 (16)0.0214 (16)
C40.066 (2)0.117 (3)0.0420 (16)0.029 (2)0.0174 (15)0.0277 (18)
C50.068 (2)0.115 (3)0.0307 (14)0.021 (2)0.0085 (13)−0.0044 (16)
C60.0494 (16)0.0736 (19)0.0405 (14)0.0146 (14)0.0069 (12)−0.0086 (13)
C70.0376 (13)0.0438 (13)0.0325 (11)0.0155 (10)0.0081 (9)0.0096 (10)
C80.0579 (18)0.0594 (17)0.0569 (17)0.0269 (14)0.0088 (14)−0.0034 (13)
C90.072 (2)0.080 (2)0.076 (2)0.0471 (19)0.0254 (18)0.0069 (18)
C100.0442 (17)0.093 (2)0.079 (2)0.0337 (17)0.0154 (16)0.0245 (19)
C110.0361 (14)0.0706 (19)0.0612 (17)0.0141 (13)0.0068 (12)0.0138 (15)
C120.0326 (12)0.0494 (14)0.0365 (12)0.0084 (10)0.0072 (10)0.0110 (10)
C130.0374 (13)0.0417 (13)0.0357 (12)0.0016 (10)0.0060 (10)0.0005 (10)
C140.0382 (12)0.0329 (11)0.0269 (10)0.0084 (9)0.0090 (9)0.0053 (9)
C150.0406 (13)0.0378 (12)0.0351 (12)0.0103 (10)0.0118 (10)0.0016 (10)
C160.0622 (17)0.0389 (13)0.0497 (15)0.0161 (12)0.0205 (13)0.0010 (11)
C170.0542 (16)0.0372 (13)0.0540 (15)0.0201 (12)0.0144 (12)0.0044 (11)
C180.0500 (18)0.074 (2)0.101 (3)0.0284 (16)0.0145 (17)0.0323 (19)
C190.082 (3)0.091 (3)0.101 (3)0.041 (2)−0.008 (2)0.037 (2)
C200.113 (3)0.068 (2)0.081 (2)0.035 (2)0.017 (2)0.0373 (19)
C210.083 (2)0.0584 (19)0.085 (2)0.0074 (17)0.024 (2)0.0262 (18)
C220.0602 (18)0.0491 (16)0.0636 (18)0.0035 (14)0.0073 (14)0.0107 (14)
C230.0491 (15)0.0422 (13)0.0344 (12)0.0027 (11)0.0176 (11)0.0066 (10)
C240.0609 (18)0.0486 (16)0.0498 (16)0.0019 (13)0.0098 (13)0.0077 (12)
C250.095 (3)0.0418 (16)0.071 (2)−0.0038 (17)0.0230 (19)0.0002 (15)
C260.096 (3)0.054 (2)0.103 (3)0.027 (2)0.042 (2)0.017 (2)
C270.068 (2)0.089 (3)0.099 (3)0.036 (2)0.022 (2)0.031 (2)
C280.0578 (18)0.0658 (19)0.0601 (18)0.0080 (15)0.0097 (15)0.0074 (15)
N10.0338 (10)0.0360 (10)0.0296 (9)0.0078 (8)0.0050 (8)0.0000 (8)
O10.0690 (13)0.0390 (10)0.0527 (11)−0.0034 (9)0.0004 (9)−0.0035 (8)
O20.0323 (9)0.0753 (13)0.0435 (10)0.0100 (9)0.0073 (7)0.0017 (9)
O30.128 (2)0.0516 (12)0.0348 (10)−0.0095 (12)0.0162 (11)−0.0058 (9)
O40.0838 (16)0.0688 (14)0.1168 (19)0.0287 (12)0.0735 (15)0.0273 (13)
S10.0369 (3)0.0433 (3)0.0340 (3)0.0025 (3)0.0040 (2)−0.0011 (2)
S20.0668 (5)0.0409 (3)0.0434 (4)0.0055 (3)0.0289 (3)0.0016 (3)
C1—C61.376 (3)C16—C171.497 (4)
C1—C21.381 (4)C16—H16A0.9700
C1—S11.757 (2)C16—H16B0.9700
C2—C31.379 (4)C17—C181.377 (4)
C2—H20.9300C17—C221.378 (4)
C3—C41.366 (4)C18—C191.370 (5)
C3—H30.9300C18—H180.9300
C4—C51.371 (5)C19—C201.355 (5)
C4—H40.9300C19—H190.9300
C5—C61.379 (4)C20—C211.356 (5)
C5—H50.9300C20—H200.9300
C6—H60.9300C21—C221.380 (4)
C7—C81.385 (3)C21—H210.9300
C7—C121.392 (3)C22—H220.9300
C7—N11.413 (3)C23—C281.370 (4)
C8—C91.374 (4)C23—C241.373 (4)
C8—H80.9300C23—S21.760 (3)
C9—C101.385 (5)C24—C251.387 (4)
C9—H90.9300C24—H240.9300
C10—C111.365 (4)C25—C261.358 (5)
C10—H100.9300C25—H250.9300
C11—C121.392 (3)C26—C271.357 (5)
C11—H110.9300C26—H260.9300
C12—C131.421 (3)C27—C281.379 (5)
C13—C141.343 (3)C27—H270.9300
C13—H130.9300C28—H280.9300
C14—N11.429 (3)N1—S11.6679 (18)
C14—C151.490 (3)O1—S11.4176 (18)
C15—C161.536 (3)O2—S11.4211 (18)
C15—S21.812 (2)O3—S21.431 (2)
C15—H150.9800O4—S21.430 (2)
C6—C1—C2121.5 (2)H16A—C16—H16B108.0
C6—C1—S1118.0 (2)C18—C17—C22117.7 (3)
C2—C1—S1120.35 (18)C18—C17—C16120.9 (3)
C3—C2—C1118.9 (3)C22—C17—C16121.4 (3)
C3—C2—H2120.6C19—C18—C17120.9 (3)
C1—C2—H2120.6C19—C18—H18119.5
C4—C3—C2120.3 (3)C17—C18—H18119.5
C4—C3—H3119.9C20—C19—C18120.6 (3)
C2—C3—H3119.9C20—C19—H19119.7
C3—C4—C5120.2 (3)C18—C19—H19119.7
C3—C4—H4119.9C19—C20—C21119.8 (3)
C5—C4—H4119.9C19—C20—H20120.1
C4—C5—C6120.8 (3)C21—C20—H20120.1
C4—C5—H5119.6C20—C21—C22120.1 (3)
C6—C5—H5119.6C20—C21—H21119.9
C1—C6—C5118.3 (3)C22—C21—H21119.9
C1—C6—H6120.9C17—C22—C21120.8 (3)
C5—C6—H6120.9C17—C22—H22119.6
C8—C7—C12122.3 (2)C21—C22—H22119.6
C8—C7—N1129.9 (2)C28—C23—C24120.9 (3)
C12—C7—N1107.88 (19)C28—C23—S2119.0 (2)
C9—C8—C7116.6 (3)C24—C23—S2120.1 (2)
C9—C8—H8121.7C23—C24—C25118.7 (3)
C7—C8—H8121.7C23—C24—H24120.7
C8—C9—C10122.0 (3)C25—C24—H24120.7
C8—C9—H9119.0C26—C25—C24120.2 (3)
C10—C9—H9119.0C26—C25—H25119.9
C11—C10—C9121.1 (3)C24—C25—H25119.9
C11—C10—H10119.4C27—C26—C25120.8 (3)
C9—C10—H10119.4C27—C26—H26119.6
C10—C11—C12118.5 (3)C25—C26—H26119.6
C10—C11—H11120.7C26—C27—C28120.1 (3)
C12—C11—H11120.7C26—C27—H27120.0
C11—C12—C7119.5 (2)C28—C27—H27120.0
C11—C12—C13133.2 (2)C23—C28—C27119.3 (3)
C7—C12—C13107.3 (2)C23—C28—H28120.4
C14—C13—C12109.5 (2)C27—C28—H28120.4
C14—C13—H13125.2C7—N1—C14106.97 (18)
C12—C13—H13125.2C7—N1—S1120.12 (15)
C13—C14—N1108.34 (19)C14—N1—S1128.16 (15)
C13—C14—C15127.7 (2)O1—S1—O2118.97 (12)
N1—C14—C15123.26 (19)O1—S1—N1107.18 (11)
C14—C15—C16114.0 (2)O2—S1—N1107.21 (10)
C14—C15—S2110.79 (16)O1—S1—C1108.76 (11)
C16—C15—S2106.56 (15)O2—S1—C1109.44 (11)
C14—C15—H15108.4N1—S1—C1104.28 (10)
C16—C15—H15108.4O4—S2—O3118.72 (15)
S2—C15—H15108.4O4—S2—C23109.84 (12)
C17—C16—C15111.6 (2)O3—S2—C23106.77 (14)
C17—C16—H16A109.3O4—S2—C15106.67 (13)
C15—C16—H16A109.3O3—S2—C15107.65 (11)
C17—C16—H16B109.3C23—S2—C15106.58 (10)
C15—C16—H16B109.3
C6—C1—C2—C3−0.2 (4)S2—C23—C24—C25−179.1 (2)
S1—C1—C2—C3175.7 (2)C23—C24—C25—C26−2.5 (5)
C1—C2—C3—C4−0.4 (5)C24—C25—C26—C270.9 (5)
C2—C3—C4—C50.8 (5)C25—C26—C27—C281.5 (6)
C3—C4—C5—C6−0.6 (5)C24—C23—C28—C270.8 (4)
C2—C1—C6—C50.4 (4)S2—C23—C28—C27−178.5 (2)
S1—C1—C6—C5−175.5 (2)C26—C27—C28—C23−2.4 (5)
C4—C5—C6—C10.0 (5)C8—C7—N1—C14179.9 (2)
C12—C7—C8—C90.2 (4)C12—C7—N1—C14−0.6 (2)
N1—C7—C8—C9179.6 (3)C8—C7—N1—S122.4 (3)
C7—C8—C9—C10−0.5 (5)C12—C7—N1—S1−158.08 (16)
C8—C9—C10—C110.2 (5)C13—C14—N1—C70.9 (2)
C9—C10—C11—C120.4 (5)C15—C14—N1—C7171.90 (19)
C10—C11—C12—C7−0.7 (4)C13—C14—N1—S1156.01 (17)
C10—C11—C12—C13−179.6 (3)C15—C14—N1—S1−33.0 (3)
C8—C7—C12—C110.4 (4)C7—N1—S1—O1−54.17 (19)
N1—C7—C12—C11−179.1 (2)C14—N1—S1—O1153.59 (18)
C8—C7—C12—C13179.6 (2)C7—N1—S1—O2177.05 (17)
N1—C7—C12—C130.1 (2)C14—N1—S1—O224.8 (2)
C11—C12—C13—C14179.5 (3)C7—N1—S1—C161.05 (19)
C7—C12—C13—C140.5 (3)C14—N1—S1—C1−91.20 (19)
C12—C13—C14—N1−0.9 (3)C6—C1—S1—O1−23.8 (2)
C12—C13—C14—C15−171.4 (2)C2—C1—S1—O1160.2 (2)
C13—C14—C15—C16−44.7 (3)C6—C1—S1—O2107.6 (2)
N1—C14—C15—C16146.1 (2)C2—C1—S1—O2−68.4 (2)
C13—C14—C15—S275.5 (3)C6—C1—S1—N1−137.9 (2)
N1—C14—C15—S2−93.7 (2)C2—C1—S1—N146.1 (2)
C14—C15—C16—C17−69.2 (3)C28—C23—S2—O4134.5 (2)
S2—C15—C16—C17168.22 (19)C24—C23—S2—O4−44.9 (2)
C15—C16—C17—C18−72.9 (3)C28—C23—S2—O34.5 (2)
C15—C16—C17—C22106.7 (3)C24—C23—S2—O3−174.8 (2)
C22—C17—C18—C190.1 (5)C28—C23—S2—C15−110.3 (2)
C16—C17—C18—C19179.6 (3)C24—C23—S2—C1570.3 (2)
C17—C18—C19—C201.1 (6)C14—C15—S2—O4154.36 (17)
C18—C19—C20—C21−1.9 (6)C16—C15—S2—O4−81.1 (2)
C19—C20—C21—C221.5 (6)C14—C15—S2—O3−77.20 (19)
C18—C17—C22—C21−0.4 (4)C16—C15—S2—O347.4 (2)
C16—C17—C22—C21−180.0 (3)C14—C15—S2—C2337.04 (19)
C20—C21—C22—C17−0.3 (5)C16—C15—S2—C23161.59 (17)
C28—C23—C24—C251.6 (4)
D—H···AD—HH···AD···AD—H···A
C8—H8···O10.932.433.009 (4)121
C15—H15···O20.982.112.907 (3)137
C4—H4···O3i0.932.493.314 (3)148
C13—H13···O3ii0.932.503.240 (3)137
C2—H2···Cg40.932.833.544 (3)134
C19—H19···Cg2iii0.932.913.620 (4)134
Table 1

Hydrogen-bond geometry (Å, °)

Cg2 and Cg4 are the centroids of the C1–C6 and C17–C22 rings, respectively.

D—H⋯A D—HH⋯A DA D—H⋯A
C8—H8⋯O10.932.433.009 (4)121
C15—H15⋯O20.982.112.907 (3)137
C4—H4⋯O3i 0.932.493.314 (3)148
C13—H13⋯O3ii 0.932.503.240 (3)137
C2—H2⋯Cg40.932.833.544 (3)134
C19—H19⋯Cg2iii 0.932.913.620 (4)134

Symmetry codes: (i) ; (ii) ; (iii) .

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