| Literature DB >> 26870499 |
Bernhard Bugenhagen1, Nuha Al Soom2, Yosef Al Jasem3, Thies Thiemann2.
Abstract
The title compound, C9H9NO, crystallized with two independent mol-ecules (A and B) in the asymmetric unit. The conformation of the two mol-ecules differs slightly with the phenyl ring in mol-ecule A, forming a dihedral angle of 15.38 (12)° with the oxime group (O-N=C), compared to the corresponding angle of 26.29 (11)° in mol-ecule B. In the crystal, the A and B mol-ecules are linked head-to-head by O-H⋯N hydrogen bonds, forming -A-B-A-B- zigzag chains along [010]. Within the chains and between neighbouring chains there are C-H⋯π inter-actions present, forming a three-dimensional structure.Entities:
Keywords: C—H⋯π interactions; O—H⋯N hydrogen bonding; cinnamaldehyde; conformers; crystal structure; oxime
Year: 2015 PMID: 26870499 PMCID: PMC4719980 DOI: 10.1107/S2056989015023853
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
| C9H9NO | |
| Melting point: 348 K | |
| Orthorhombic, | Mo |
| Cell parameters from 9623 reflections | |
| θ = 2.2–28.4° | |
| µ = 0.08 mm−1 | |
| Block, colourless | |
| 0.2 × 0.2 × 0.1 mm |
| Bruker APEXII CCD diffractometer | 3724 reflections with |
| φ and ω scans | |
| Absorption correction: multi-scan ( | θmax = 28.6°, θmin = 1.0° |
| 34431 measured reflections | |
| 3944 independent reflections |
| Refinement on | 0 restraints |
| Least-squares matrix: full | Hydrogen site location: mixed |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max = 0.001 | |
| 3944 reflections | Δρmax = 0.45 e Å−3 |
| 207 parameters | Δρmin = −0.19 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| O1B | 0.27939 (9) | 0.14918 (13) | 0.83349 (2) | 0.0214 (2) | |
| O1A | 0.57897 (9) | 0.36622 (12) | 0.60376 (2) | 0.0210 (2) | |
| N1A | 0.65418 (10) | 0.21056 (14) | 0.60658 (2) | 0.0172 (2) | |
| N1B | 0.37727 (11) | 0.02042 (14) | 0.83755 (2) | 0.0189 (2) | |
| C9A | 0.66426 (11) | 0.12592 (16) | 0.57973 (3) | 0.0162 (2) | |
| H9A | 0.7096 | 0.0167 | 0.5804 | 0.019* | |
| C7A | 0.65649 (11) | 0.10018 (15) | 0.52143 (3) | 0.0146 (2) | |
| H7A | 0.7135 | 0.0024 | 0.5242 | 0.017* | |
| C1A | 0.62383 (11) | 0.14952 (15) | 0.48805 (3) | 0.0137 (2) | |
| C6A | 0.52038 (11) | 0.26618 (15) | 0.48030 (3) | 0.0152 (2) | |
| H6A | 0.4665 | 0.3124 | 0.4968 | 0.018* | |
| C2B | 0.50012 (12) | −0.04774 (16) | 0.69394 (3) | 0.0171 (2) | |
| H2B | 0.5770 | −0.1114 | 0.6993 | 0.021* | |
| C5A | 0.49730 (12) | 0.31367 (16) | 0.44838 (3) | 0.0182 (2) | |
| H5A | 0.4278 | 0.3920 | 0.4434 | 0.022* | |
| C7B | 0.44406 (12) | −0.04211 (15) | 0.75192 (3) | 0.0167 (2) | |
| H7B | 0.5154 | −0.1202 | 0.7552 | 0.020* | |
| C2A | 0.70079 (12) | 0.08011 (17) | 0.46297 (3) | 0.0189 (2) | |
| H2A | 0.7689 | −0.0008 | 0.4678 | 0.023* | |
| C8A | 0.61346 (11) | 0.18013 (15) | 0.54843 (3) | 0.0152 (2) | |
| H8A | 0.5502 | 0.2716 | 0.5471 | 0.018* | |
| C1B | 0.41218 (11) | 0.00325 (15) | 0.71837 (3) | 0.0153 (2) | |
| C3B | 0.47534 (13) | −0.00548 (17) | 0.66187 (3) | 0.0202 (3) | |
| H3B | 0.5352 | −0.0408 | 0.6457 | 0.024* | |
| C5B | 0.27317 (13) | 0.13917 (17) | 0.67760 (3) | 0.0224 (3) | |
| H5B | 0.1963 | 0.2023 | 0.6720 | 0.027* | |
| C6B | 0.29760 (12) | 0.09644 (16) | 0.70966 (3) | 0.0188 (2) | |
| H6B | 0.2368 | 0.1303 | 0.7257 | 0.023* | |
| C4B | 0.36242 (14) | 0.08882 (17) | 0.65358 (3) | 0.0228 (3) | |
| H4B | 0.3461 | 0.1186 | 0.6319 | 0.027* | |
| C8B | 0.38138 (12) | 0.01692 (16) | 0.77854 (3) | 0.0170 (2) | |
| H8B | 0.3088 | 0.0942 | 0.7763 | 0.020* | |
| C9B | 0.42381 (13) | −0.03653 (16) | 0.81057 (3) | 0.0191 (2) | |
| H9B | 0.4921 | −0.1212 | 0.8117 | 0.023* | |
| C4A | 0.57625 (13) | 0.24623 (18) | 0.42372 (3) | 0.0220 (3) | |
| H4A | 0.5607 | 0.2799 | 0.4022 | 0.026* | |
| C3A | 0.67797 (14) | 0.12902 (18) | 0.43106 (3) | 0.0235 (3) | |
| H3A | 0.7314 | 0.0828 | 0.4145 | 0.028* | |
| H1B | 0.248 (2) | 0.163 (2) | 0.8539 (4) | 0.039 (5)* | |
| H1A | 0.588 (2) | 0.415 (3) | 0.6235 (5) | 0.048 (6)* |
| O1B | 0.0216 (4) | 0.0283 (5) | 0.0144 (4) | 0.0041 (4) | 0.0037 (3) | 0.0011 (3) |
| O1A | 0.0301 (5) | 0.0197 (4) | 0.0131 (4) | 0.0029 (4) | −0.0024 (3) | −0.0010 (3) |
| N1A | 0.0181 (5) | 0.0191 (5) | 0.0144 (5) | −0.0022 (4) | −0.0008 (4) | 0.0040 (4) |
| N1B | 0.0237 (5) | 0.0183 (5) | 0.0146 (5) | −0.0013 (4) | −0.0001 (4) | 0.0023 (4) |
| C9A | 0.0169 (5) | 0.0174 (5) | 0.0141 (5) | −0.0026 (4) | −0.0012 (4) | 0.0033 (4) |
| C7A | 0.0143 (5) | 0.0136 (5) | 0.0159 (5) | −0.0011 (4) | −0.0030 (4) | 0.0012 (4) |
| C1A | 0.0158 (5) | 0.0118 (5) | 0.0134 (5) | −0.0026 (4) | −0.0024 (4) | −0.0012 (4) |
| C6A | 0.0148 (5) | 0.0147 (5) | 0.0160 (5) | −0.0010 (4) | −0.0008 (4) | −0.0011 (4) |
| C2B | 0.0167 (5) | 0.0167 (5) | 0.0178 (5) | −0.0018 (4) | 0.0025 (4) | −0.0009 (4) |
| C5A | 0.0179 (5) | 0.0171 (5) | 0.0195 (6) | −0.0008 (4) | −0.0054 (4) | 0.0022 (4) |
| C7B | 0.0196 (5) | 0.0142 (5) | 0.0164 (5) | 0.0014 (4) | 0.0010 (4) | 0.0006 (4) |
| C2A | 0.0206 (6) | 0.0189 (6) | 0.0172 (6) | 0.0051 (5) | −0.0019 (4) | −0.0028 (4) |
| C8A | 0.0164 (5) | 0.0151 (5) | 0.0141 (5) | −0.0020 (4) | −0.0023 (4) | 0.0015 (4) |
| C1B | 0.0189 (5) | 0.0125 (5) | 0.0144 (5) | −0.0018 (4) | 0.0019 (4) | −0.0005 (4) |
| C3B | 0.0254 (6) | 0.0203 (6) | 0.0149 (5) | −0.0065 (5) | 0.0053 (5) | −0.0020 (4) |
| C5B | 0.0265 (7) | 0.0189 (6) | 0.0218 (6) | 0.0021 (5) | −0.0048 (5) | 0.0013 (5) |
| C6B | 0.0211 (6) | 0.0179 (6) | 0.0175 (6) | 0.0020 (5) | 0.0019 (4) | −0.0010 (4) |
| C4B | 0.0324 (7) | 0.0207 (6) | 0.0152 (5) | −0.0065 (5) | −0.0032 (5) | 0.0023 (5) |
| C8B | 0.0206 (5) | 0.0157 (5) | 0.0146 (5) | −0.0005 (4) | 0.0015 (4) | 0.0009 (4) |
| C9B | 0.0239 (6) | 0.0171 (6) | 0.0162 (5) | 0.0001 (5) | 0.0007 (4) | 0.0022 (4) |
| C4A | 0.0290 (6) | 0.0236 (6) | 0.0133 (5) | −0.0014 (5) | −0.0052 (5) | 0.0011 (5) |
| C3A | 0.0299 (7) | 0.0270 (7) | 0.0137 (5) | 0.0033 (5) | 0.0015 (5) | −0.0048 (5) |
| C1A—C2A | 1.4133 (17) | C6A—H6A | 0.9500 |
| C1A—C6A | 1.4171 (16) | C6B—H6B | 0.9500 |
| C1B—C6B | 1.4166 (17) | C7A—C8A | 1.3548 (17) |
| C2A—C3A | 1.4043 (18) | C7A—C1A | 1.4834 (16) |
| C2A—H2A | 0.9500 | C7A—H7A | 0.9500 |
| C2B—C3B | 1.4020 (17) | C7B—C8B | 1.3606 (17) |
| C2B—C1B | 1.4152 (16) | C7B—C1B | 1.4806 (17) |
| C2B—H2B | 0.9500 | C7B—H7B | 0.9500 |
| C3A—H3A | 0.9500 | C8A—H8A | 0.9500 |
| C3B—C4B | 1.402 (2) | C8B—C9B | 1.4649 (17) |
| C3B—H3B | 0.9500 | C8B—H8B | 0.9500 |
| C4A—C3A | 1.4027 (19) | C9A—C8A | 1.4671 (16) |
| C4A—H4A | 0.9500 | C9A—H9A | 0.9500 |
| C4B—H4B | 0.9500 | C9B—H9B | 0.9500 |
| C5A—C4A | 1.4063 (19) | N1A—C9A | 1.2977 (16) |
| C5A—H5A | 0.9500 | N1B—C9B | 1.2985 (16) |
| C5B—C4B | 1.4100 (19) | O1A—H1A | 0.91 (2) |
| C5B—C6B | 1.4017 (18) | O1A—N1A | 1.4141 (14) |
| C5B—H5B | 0.9500 | O1B—H1B | 0.917 (19) |
| C6A—C5A | 1.4026 (17) | O1B—N1B | 1.4090 (14) |
| C1A—C2A—H2A | 119.5 | C5B—C4B—H4B | 120.1 |
| C1A—C6A—H6A | 119.9 | C5B—C6B—H6B | 119.7 |
| C1A—C7A—H7A | 116.6 | C5B—C6B—C1B | 120.60 (11) |
| C1B—C6B—H6B | 119.7 | C6A—C5A—C4A | 120.52 (11) |
| C1B—C7B—H7B | 116.7 | C6A—C5A—H5A | 119.7 |
| C1B—C2B—H2B | 119.6 | C6A—C1A—C7A | 122.75 (10) |
| C2A—C3A—H3A | 120.0 | C6B—C5B—C4B | 120.20 (12) |
| C2A—C1A—C6A | 118.62 (11) | C6B—C5B—H5B | 119.9 |
| C2A—C1A—C7A | 118.62 (11) | C6B—C1B—C7B | 122.82 (10) |
| C2B—C3B—C4B | 120.13 (11) | C7A—C8A—H8A | 119.9 |
| C2B—C3B—H3B | 119.9 | C7A—C8A—C9A | 120.18 (11) |
| C2B—C1B—C6B | 118.47 (11) | C7B—C8B—C9B | 121.15 (12) |
| C2B—C1B—C7B | 118.71 (11) | C7B—C8B—H8B | 119.4 |
| C3A—C4A—H4A | 120.1 | C8A—C7A—C1A | 126.72 (11) |
| C3A—C4A—C5A | 119.75 (11) | C8A—C7A—H7A | 116.6 |
| C3A—C2A—H2A | 119.5 | C8A—C9A—H9A | 116.4 |
| C3A—C2A—C1A | 120.94 (11) | C8B—C9B—H9B | 116.8 |
| C3B—C4B—H4B | 120.1 | C8B—C7B—C1B | 126.51 (11) |
| C3B—C4B—C5B | 119.72 (12) | C8B—C7B—H7B | 116.7 |
| C3B—C2B—C1B | 120.87 (12) | C9A—C8A—H8A | 119.9 |
| C3B—C2B—H2B | 119.6 | C9A—N1A—O1A | 112.58 (9) |
| C4A—C3A—H3A | 120.0 | C9B—C8B—H8B | 119.4 |
| C4A—C3A—C2A | 119.91 (11) | C9B—N1B—O1B | 112.73 (10) |
| C4A—C5A—H5A | 119.7 | N1A—C9A—C8A | 127.25 (11) |
| C4B—C5B—H5B | 119.9 | N1A—C9A—H9A | 116.4 |
| C4B—C3B—H3B | 119.9 | N1A—O1A—H1A | 102.2 (13) |
| C5A—C4A—H4A | 120.1 | N1B—C9B—H9B | 116.8 |
| C5A—C6A—H6A | 119.9 | N1B—C9B—C8B | 126.41 (12) |
| C5A—C6A—C1A | 120.24 (11) | N1B—O1B—H1B | 102.2 (12) |
| C1A—C2A—C3A—C4A | −1.0 (2) | C6A—C1A—C2A—C3A | 1.73 (18) |
| C1A—C6A—C5A—C4A | 0.04 (18) | C6B—C5B—C4B—C3B | 0.50 (19) |
| C1A—C7A—C8A—C9A | −174.32 (11) | C7A—C1A—C2A—C3A | −177.00 (11) |
| C1B—C7B—C8B—C9B | −179.24 (11) | C7A—C1A—C6A—C5A | 177.43 (11) |
| C1B—C2B—C3B—C4B | 0.13 (18) | C7B—C8B—C9B—N1B | 175.07 (12) |
| C2A—C1A—C6A—C5A | −1.24 (17) | C7B—C1B—C6B—C5B | 178.75 (12) |
| C2B—C3B—C4B—C5B | −0.73 (19) | C8A—C7A—C1A—C2A | 165.01 (12) |
| C2B—C1B—C6B—C5B | −0.92 (18) | C8A—C7A—C1A—C6A | −13.66 (18) |
| C3B—C2B—C1B—C6B | 0.69 (18) | C8B—C7B—C1B—C6B | −9.56 (19) |
| C3B—C2B—C1B—C7B | −179.00 (11) | C8B—C7B—C1B—C2B | 170.11 (12) |
| C4B—C5B—C6B—C1B | 0.34 (19) | N1A—C9A—C8A—C7A | 164.78 (12) |
| C5A—C4A—C3A—C2A | −0.2 (2) | O1A—N1A—C9A—C8A | 3.45 (17) |
| C6A—C5A—C4A—C3A | 0.71 (19) | O1B—N1B—C9B—C8B | −1.80 (18) |
| H··· | ||||
| O1 | 0.91 (2) | 1.85 (2) | 2.755 (2) | 174 (2) |
| O1 | 0.92 (2) | 1.95 (2) | 2.853 (2) | 170 (2) |
| C2 | 0.95 | 2.70 | 3.563 (2) | 151 |
| C5 | 0.95 | 2.80 | 3.508 (2) | 132 |
| C9 | 0.95 | 2.82 | 3.717 (2) | 159 |
Hydrogen-bond geometry (Å, °)
Cg1 and Cg2 are the centroids of rings C1A–C6A and C1B–C6B, respectively.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O1 | 0.91 (2) | 1.85 (2) | 2.755 (2) | 174 (2) |
| O1 | 0.92 (2) | 1.95 (2) | 2.853 (2) | 170 (2) |
| C2 | 0.95 | 2.70 | 3.563 (2) | 151 |
| C5 | 0.95 | 2.80 | 3.508 (2) | 132 |
| C9 | 0.95 | 2.82 | 3.717 (2) | 159 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .