Literature DB >> 26870498

Crystal structure of 2-bromo-3-di-methyl-amino-N,N,N',N',4-penta-methyl-4-(tri-methyl-sil-yloxy)pent-2-eneamidinium bromide.

Ioannis Tiritiris1, Ralf Kress1, Willi Kantlehner1.   

Abstract

The reaction of the ortho-amide 1,1,1-tris-(di-methyl-amino)-4-methyl-4-(tri-methyl-sil-yloxy)pent-2-yne with bromine in benzene, yields the title salt, C15H33BrN3OSi(+)·Br(-). The C-N bond lengths in the amidinium unit are 1.319 (6) and 1.333 (6) Å, indicating double-bond character, pointing towards charge delocalization within the NCN plane. The C-Br bond length of 1.926 (5) Å is characteristic for a C-Br single bond. Additionally, there is a bromine-bromine inter-action [3.229 (3) Å] present involving the anion and cation. In the crystal, weak C-H⋯Br inter-actions between the methyl H atoms of the cation and the bromide ions are present.

Entities:  

Keywords:  Br⋯Br inter­actions; C—H⋯Br inter­actions; amidinium; bromide; crystal structure; salt

Year:  2015        PMID: 26870498      PMCID: PMC4719979          DOI: 10.1107/S205698901502383X

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For the nature of halogenhalogen inter­actions in crystals, see: Desiraju & Parthasarathy (1989 ▸). For the synthesis of alkynyl ortho­amides and propiolamidinium salts, see: Weingärtner et al. (2011 ▸). For the synthesis of vinyl­ogous guanidinium iodides and bromides, see: Kantlehner et al. (2012a ▸). For the crystal structure of 3-phenyl-N,N,N′,N′′-tetra­methyl-1-ethyne-1-carboximidamidium bromide, see: Tiritiris & Kantlehner (2012b ▸).

Experimental

Crystal data

C15H33BrN3OSiBr M = 459.33 Orthorhombic, a = 13.3524 (5) Å b = 11.3802 (3) Å c = 27.4261 (14) Å V = 4167.5 (3) Å3 Z = 8 Mo Kα radiation μ = 3.95 mm−1 T = 100 K 0.45 × 0.30 × 0.15 mm

Data collection

Bruker Kappa APEXII DUO diffractometer Absorption correction: multi-scan (Blessing, 1995 ▸) T min = 0.285, T max = 0.530 32287 measured reflections 5164 independent reflections 3394 reflections with I > 2σ(I) R int = 0.095

Refinement

R[F 2 > 2σ(F 2)] = 0.061 wR(F 2) = 0.099 S = 1.17 5164 reflections 210 parameters H-atom parameters constrained Δρmax = 1.10 e Å−3 Δρmin = −1.88 e Å−3

Data collection: APEX2 (Bruker, 2008 ▸); cell refinement: SAINT (Bruker, 2008 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015 ▸); molecular graphics: DIAMOND (Brandenburg & Putz, 2005 ▸); software used to prepare material for publication: SHELXL2014. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S205698901502383X/ff2146sup1.cif Click here for additional data file. . DOI: 10.1107/S205698901502383X/ff2146fig1.tif The structure of the title compound with displacement ellipsoids at the 50% probability level. All hydrogen atoms were omitted for the sake of clarity. The BrBr inter­action is indicated by a black dashed line. Click here for additional data file. . DOI: 10.1107/S205698901502383X/ff2146fig2.tif C—H⋯Br inter­actions (black dashed lines) between the hydrogen atoms of the methyl groups and the bromide ions. BrBr inter­actions are also indicated by black dashed lines. CCDC reference: 1441961 Additional supporting information: crystallographic information; 3D view; checkCIF report
C15H33BrN3OSi+·BrDx = 1.464 Mg m3
Mr = 459.33Mo Kα radiation, λ = 0.71073 Å
Orthorhombic, PbcaCell parameters from 32287 reflections
a = 13.3524 (5) Åθ = 1.5–28.3°
b = 11.3802 (3) ŵ = 3.95 mm1
c = 27.4261 (14) ÅT = 100 K
V = 4167.5 (3) Å3Block, yellow
Z = 80.45 × 0.30 × 0.15 mm
F(000) = 1888
Bruker Kappa APEXII DUO diffractometer5164 independent reflections
Radiation source: fine-focus sealed tube3394 reflections with I > 2σ(I)
Triumph monochromatorRint = 0.095
φ scans, and ω scansθmax = 28.3°, θmin = 1.5°
Absorption correction: multi-scan (Blessing, 1995)h = −17→10
Tmin = 0.285, Tmax = 0.530k = −15→15
32287 measured reflectionsl = −36→36
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.061Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.099H-atom parameters constrained
S = 1.17w = 1/[σ2(Fo2) + 19.9082P] where P = (Fo2 + 2Fc2)/3
5164 reflections(Δ/σ)max < 0.001
210 parametersΔρmax = 1.10 e Å3
0 restraintsΔρmin = −1.88 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.54519 (4)0.73694 (4)0.13843 (2)0.01487 (12)
Br20.45103 (4)0.23306 (5)0.24383 (2)0.01507 (12)
N10.5406 (3)0.3518 (3)0.13946 (16)0.0147 (9)
C10.4511 (4)0.4276 (4)0.1374 (2)0.0213 (12)
H1A0.39380.38160.12580.032*
H1B0.46330.49300.11490.032*
H1C0.43670.45850.17000.032*
C20.6368 (4)0.4157 (5)0.1374 (2)0.0226 (13)
H2A0.68790.37140.15530.034*
H2B0.62870.49350.15210.034*
H2C0.65760.42440.10330.034*
N20.6052 (3)0.1612 (4)0.14393 (15)0.0125 (9)
C30.6869 (4)0.1740 (5)0.1081 (2)0.0183 (12)
H3A0.67110.23850.08570.027*
H3B0.69420.10080.08960.027*
H3C0.74960.19140.12520.027*
C40.6060 (4)0.0462 (5)0.1683 (2)0.0194 (12)
H4A0.55450.04480.19380.029*
H4B0.67190.03280.18310.029*
H4C0.5922−0.01570.14440.029*
C50.5318 (3)0.2392 (4)0.15005 (16)0.0109 (10)
C60.4400 (4)0.1967 (4)0.17545 (17)0.0113 (10)
C70.3621 (3)0.1384 (4)0.15758 (18)0.0090 (10)
N30.2856 (3)0.0847 (4)0.18667 (15)0.0135 (10)
C80.2094 (4)0.1616 (5)0.2075 (2)0.0202 (13)
H8A0.23640.20050.23650.030*
H8B0.15060.11490.21660.030*
H8C0.19000.22090.18340.030*
C90.3192 (4)−0.0079 (5)0.2199 (2)0.0206 (13)
H9A0.3710−0.05510.20390.031*
H9B0.2623−0.05830.22840.031*
H9C0.34660.02770.24960.031*
C100.3455 (4)0.1153 (4)0.10276 (18)0.0087 (10)
C110.3601 (4)−0.0161 (4)0.09338 (19)0.0145 (11)
H11A0.3426−0.03410.05950.022*
H11B0.3168−0.06120.11540.022*
H11C0.4302−0.03720.09930.022*
C120.2409 (3)0.1539 (4)0.08853 (18)0.0112 (10)
H12A0.23340.23830.09470.017*
H12B0.19160.11030.10780.017*
H12C0.23010.13810.05380.017*
O10.4196 (2)0.1804 (3)0.07547 (12)0.0096 (7)
Si10.41809 (10)0.21877 (12)0.01674 (5)0.0103 (3)
C130.3405 (4)0.3517 (5)0.0054 (2)0.0169 (12)
H13A0.26980.33320.01130.025*
H13B0.34910.3772−0.02850.025*
H13C0.36160.41490.02740.025*
C140.3757 (4)0.0988 (5)−0.02454 (19)0.0170 (12)
H14A0.41820.0295−0.01980.025*
H14B0.38040.1251−0.05850.025*
H14C0.30600.0785−0.01700.025*
C150.5486 (4)0.2599 (5)0.00131 (18)0.0196 (11)
H15A0.56870.32830.02070.029*
H15B0.55290.2791−0.03350.029*
H15C0.59340.19390.00860.029*
U11U22U33U12U13U23
Br10.0172 (2)0.0146 (3)0.0128 (3)−0.0002 (2)0.0014 (2)0.0024 (2)
Br20.0157 (2)0.0198 (3)0.0097 (2)0.0007 (2)−0.0020 (2)−0.0043 (2)
N10.010 (2)0.015 (2)0.019 (2)−0.0006 (18)−0.003 (2)−0.0009 (18)
C10.017 (3)0.014 (3)0.033 (3)0.006 (2)−0.003 (3)−0.002 (2)
C20.013 (3)0.018 (3)0.036 (4)−0.009 (2)−0.004 (3)−0.003 (3)
N20.009 (2)0.013 (2)0.015 (2)0.0023 (16)−0.0033 (18)−0.0027 (18)
C30.011 (3)0.024 (3)0.020 (3)0.002 (2)0.002 (2)−0.009 (3)
C40.017 (3)0.014 (3)0.027 (3)0.005 (2)−0.002 (2)−0.003 (2)
C50.011 (2)0.013 (2)0.009 (2)−0.002 (2)−0.0038 (18)−0.0037 (19)
C60.017 (3)0.012 (2)0.005 (2)0.001 (2)0.002 (2)−0.0028 (19)
C70.009 (2)0.008 (2)0.011 (3)0.0018 (18)0.000 (2)−0.0007 (19)
N30.011 (2)0.017 (2)0.013 (2)−0.0023 (17)0.0040 (17)0.0027 (18)
C80.014 (3)0.029 (3)0.017 (3)0.001 (2)0.008 (2)−0.004 (2)
C90.026 (3)0.017 (3)0.019 (3)−0.001 (2)0.005 (2)0.005 (2)
C100.011 (2)0.004 (2)0.011 (3)−0.0030 (18)−0.002 (2)0.000 (2)
C110.018 (3)0.013 (3)0.013 (3)−0.001 (2)−0.001 (2)−0.004 (2)
C120.009 (2)0.013 (3)0.012 (3)−0.0002 (19)0.000 (2)0.001 (2)
O10.0090 (16)0.0135 (18)0.0064 (17)−0.0018 (13)0.0008 (14)−0.0002 (14)
Si10.0086 (6)0.0130 (7)0.0091 (7)−0.0004 (5)−0.0014 (5)0.0002 (6)
C130.016 (3)0.018 (3)0.016 (3)−0.001 (2)−0.002 (2)0.005 (2)
C140.020 (3)0.022 (3)0.010 (3)−0.001 (2)0.001 (2)0.000 (2)
C150.015 (2)0.028 (3)0.016 (3)−0.004 (3)0.002 (2)0.003 (2)
Br2—C61.926 (5)C8—H8C0.9800
N1—C51.319 (6)C9—H9A0.9800
N1—C11.475 (6)C9—H9B0.9800
N1—C21.476 (6)C9—H9C0.9800
C1—H1A0.9800C10—O11.445 (6)
C1—H1B0.9800C10—C121.515 (7)
C1—H1C0.9800C10—C111.530 (6)
C2—H2A0.9800C11—H11A0.9800
C2—H2B0.9800C11—H11B0.9800
C2—H2C0.9800C11—H11C0.9800
N2—C51.333 (6)C12—H12A0.9800
N2—C41.470 (6)C12—H12B0.9800
N2—C31.475 (6)C12—H12C0.9800
C3—H3A0.9800O1—Si11.669 (3)
C3—H3B0.9800Si1—C151.854 (5)
C3—H3C0.9800Si1—C131.860 (5)
C4—H4A0.9800Si1—C141.862 (5)
C4—H4B0.9800C13—H13A0.9800
C4—H4C0.9800C13—H13B0.9800
C5—C61.491 (7)C13—H13C0.9800
C6—C71.327 (7)C14—H14A0.9800
C7—N31.433 (6)C14—H14B0.9800
C7—C101.542 (7)C14—H14C0.9800
N3—C81.458 (6)C15—H15A0.9800
N3—C91.464 (6)C15—H15B0.9800
C8—H8A0.9800C15—H15C0.9800
C8—H8B0.9800
C5—N1—C1120.3 (4)N3—C9—H9B109.5
C5—N1—C2124.4 (4)H9A—C9—H9B109.5
C1—N1—C2114.6 (4)N3—C9—H9C109.5
N1—C1—H1A109.5H9A—C9—H9C109.5
N1—C1—H1B109.5H9B—C9—H9C109.5
H1A—C1—H1B109.5O1—C10—C12110.4 (4)
N1—C1—H1C109.5O1—C10—C11109.1 (4)
H1A—C1—H1C109.5C12—C10—C11110.9 (4)
H1B—C1—H1C109.5O1—C10—C7108.6 (4)
N1—C2—H2A109.5C12—C10—C7109.5 (4)
N1—C2—H2B109.5C11—C10—C7108.2 (4)
H2A—C2—H2B109.5C10—C11—H11A109.5
N1—C2—H2C109.5C10—C11—H11B109.5
H2A—C2—H2C109.5H11A—C11—H11B109.5
H2B—C2—H2C109.5C10—C11—H11C109.5
C5—N2—C4122.8 (4)H11A—C11—H11C109.5
C5—N2—C3124.1 (4)H11B—C11—H11C109.5
C4—N2—C3112.7 (4)C10—C12—H12A109.5
N2—C3—H3A109.5C10—C12—H12B109.5
N2—C3—H3B109.5H12A—C12—H12B109.5
H3A—C3—H3B109.5C10—C12—H12C109.5
N2—C3—H3C109.5H12A—C12—H12C109.5
H3A—C3—H3C109.5H12B—C12—H12C109.5
H3B—C3—H3C109.5C10—O1—Si1128.7 (3)
N2—C4—H4A109.5O1—Si1—C15106.0 (2)
N2—C4—H4B109.5O1—Si1—C13112.4 (2)
H4A—C4—H4B109.5C15—Si1—C13106.3 (2)
N2—C4—H4C109.5O1—Si1—C14113.5 (2)
H4A—C4—H4C109.5C15—Si1—C14109.4 (2)
H4B—C4—H4C109.5C13—Si1—C14109.0 (2)
N1—C5—N2123.6 (4)Si1—C13—H13A109.5
N1—C5—C6119.4 (4)Si1—C13—H13B109.5
N2—C5—C6116.6 (4)H13A—C13—H13B109.5
C7—C6—C5129.3 (4)Si1—C13—H13C109.5
C7—C6—Br2121.8 (4)H13A—C13—H13C109.5
C5—C6—Br2108.8 (3)H13B—C13—H13C109.5
C6—C7—N3124.5 (5)Si1—C14—H14A109.5
C6—C7—C10123.9 (4)Si1—C14—H14B109.5
N3—C7—C10111.6 (4)H14A—C14—H14B109.5
C7—N3—C8117.4 (4)Si1—C14—H14C109.5
C7—N3—C9115.8 (4)H14A—C14—H14C109.5
C8—N3—C9113.7 (4)H14B—C14—H14C109.5
N3—C8—H8A109.5Si1—C15—H15A109.5
N3—C8—H8B109.5Si1—C15—H15B109.5
H8A—C8—H8B109.5H15A—C15—H15B109.5
N3—C8—H8C109.5Si1—C15—H15C109.5
H8A—C8—H8C109.5H15A—C15—H15C109.5
H8B—C8—H8C109.5H15B—C15—H15C109.5
N3—C9—H9A109.5
C1—N1—C5—N2167.2 (5)C6—C7—N3—C877.4 (6)
C2—N1—C5—N2−23.8 (8)C10—C7—N3—C8−105.1 (5)
C1—N1—C5—C6−20.1 (7)C6—C7—N3—C9−61.4 (6)
C2—N1—C5—C6148.9 (5)C10—C7—N3—C9116.1 (5)
C4—N2—C5—N1161.7 (5)C6—C7—C10—O1−7.7 (6)
C3—N2—C5—N1−25.9 (7)N3—C7—C10—O1174.8 (4)
C4—N2—C5—C6−11.3 (7)C6—C7—C10—C12−128.4 (5)
C3—N2—C5—C6161.1 (4)N3—C7—C10—C1254.1 (5)
N1—C5—C6—C7104.0 (6)C6—C7—C10—C11110.6 (5)
N2—C5—C6—C7−82.7 (6)N3—C7—C10—C11−66.9 (5)
N1—C5—C6—Br2−78.9 (5)C12—C10—O1—Si1−40.7 (5)
N2—C5—C6—Br294.4 (4)C11—C10—O1—Si181.4 (5)
C5—C6—C7—N3169.1 (5)C7—C10—O1—Si1−160.9 (3)
Br2—C6—C7—N3−7.7 (7)C10—O1—Si1—C15−163.6 (4)
C5—C6—C7—C10−8.1 (8)C10—O1—Si1—C1380.7 (4)
Br2—C6—C7—C10175.1 (3)C10—O1—Si1—C14−43.5 (4)
D—H···AD—HH···AD···AD—H···A
C3—H3C···Br1i0.982.813.742 (3)159
C14—H14B···Br1ii0.982.873.790 (3)156
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C3—H3C⋯Br1i 0.982.813.742 (3)159
C14—H14B⋯Br1ii 0.982.873.790 (3)156

Symmetry codes: (i) ; (ii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  An empirical correction for absorption anisotropy.

Authors:  R H Blessing
Journal:  Acta Crystallogr A       Date:  1995-01-01       Impact factor: 2.290

3.  3-Phenyl-N,N,N',N'-tetra-methyl-1-ethyne-1-carboximidamidium bromide.

Authors:  Ioannis Tiritiris; Willi Kantlehner
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-05-19

4.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

  4 in total

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