Literature DB >> 26870496

Crystal structure of 1-(5-amino-2H-tetra-zol-2-yl)-2-methyl-propan-2-ol.

Hyun Sik Park1, Ji Yeon Ryu1, Junseong Lee1.   

Abstract

The title compound, C5H11N5O, crystallized with two independent mol-ecules in the asymmetric unit. The two mol-ecules differ in the orientation of the 2-methyl-propan-2-ol unit, with the hy-droxy H atoms pointing in opposite directions. In the crystal, mol-ecules are linked via O-H⋯O and N-H⋯O hydrogen bonds, forming ribbons propagating along [10-1]. The ribbons are linked via N-H⋯N hydrogen bonds, forming a three-dimensional structure.

Entities:  

Keywords:  2-methyl­propan-2-ol; 5-amino­tetra­zole; crystal structure; hydrogen bonding

Year:  2015        PMID: 26870496      PMCID: PMC4719977          DOI: 10.1107/S2056989015023713

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For the crystal structure of 5-amino­tetra­zole monohydrate, see: Britts & Karle (1967 ▸); and for that of 5-amino­tetra­zole, see: Fujihisa et al. (2011 ▸). For the crystal structures of alkali salts of 5-amino­tetra­zole, see: Ernst et al. (2007 ▸). For the crystal structure of 5-azido-1H-tetra­zole, a highly explosive compound, see: Stierstorfer et al. (2008 ▸). For some examples of the use of 5-amino­tetra­zole in the synthesis of metal–organic frameworks, see: Karaghiosoff et al. (2009 ▸); Liu et al. (2013 ▸).

Experimental

Crystal data

C5H11N5O M = 157.19 Triclinic, a = 8.2472 (19) Å b = 9.731 (2) Å c = 10.087 (2) Å α = 90.30 (1)° β = 96.228 (10)° γ = 96.259 (10)° V = 799.8 (3) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 296 K 0.12 × 0.10 × 0.08 mm

Data collection

Bruker SMART 1K CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2006 ▸) T min = 0.90, T max = 0.95 11190 measured reflections 2953 independent reflections 2148 reflections with I > 2σ(I) R int = 0.047

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.122 S = 1.06 2953 reflections 227 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.17 e Å−3 Δρmin = −0.19 e Å−3

Data collection: APEX2 (Bruker, 2006 ▸); cell refinement: SAINT (Bruker, 2006 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015 ▸); molecular graphics: Mercury (Macrae et al., 2008 ▸) and PLATON (Spek, 2009 ▸); software used to prepare material for publication: SHELXL2014 and PLATON. Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S2056989015023713/su5257sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015023713/su5257Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015023713/su5257Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015023713/su5257fig1.tif The mol­ecular structure of the two independent mol­ecules (A and B) of the title compound, with atom labelling. Displacement ellipsoids are drawn at the 50% probability level. Click here for additional data file. . DOI: 10.1107/S2056989015023713/su5257fig2.tif A view of the mol­ecular overlap of mol­ecules A (black) and B (red); calculated using the AutoMolfit routine in PLATON (Spek, 2009). Click here for additional data file. c . DOI: 10.1107/S2056989015023713/su5257fig3.tif A view along the c axis of the crystal packing of the title compound. The hydrogen bonds are shown as dashed lines (see Table 1). H atoms not involved in hydrogen bonding have been omitted for clarity. CCDC reference: 1441577 Additional supporting information: crystallographic information; 3D view; checkCIF report
C5H11N5OZ = 4
Mr = 157.19F(000) = 336
Triclinic, P1Dx = 1.305 Mg m3
a = 8.2472 (19) ÅMo Kα radiation, λ = 0.71073 Å
b = 9.731 (2) ÅCell parameters from 4382 reflections
c = 10.087 (2) Åθ = 2.0–29.9°
α = 90.30 (1)°µ = 0.10 mm1
β = 96.228 (10)°T = 296 K
γ = 96.259 (10)°Block, colourless
V = 799.8 (3) Å30.12 × 0.10 × 0.08 mm
Bruker SMART 1K CCD diffractometer2953 independent reflections
Radiation source: fine-focus sealed tube2148 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.047
profile data from ω scansθmax = 25.5°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Bruker, 2006)h = −9→9
Tmin = 0.90, Tmax = 0.95k = −11→11
11190 measured reflectionsl = −12→12
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.050H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.122w = 1/[σ2(Fo2) + (0.0588P)2 + 0.018P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
2953 reflectionsΔρmax = 0.17 e Å3
227 parametersΔρmin = −0.19 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
O10.28249 (16)0.86314 (15)0.81161 (14)0.0536 (4)
H1O0.270 (3)0.952 (3)0.789 (3)0.101 (9)*
N10.4219 (2)0.6570 (2)1.28100 (17)0.0530 (5)
H1A0.527 (3)0.690 (2)1.315 (2)0.063 (7)*
H1B0.378 (2)0.592 (2)1.3251 (19)0.048 (6)*
N20.48661 (17)0.69286 (15)1.05833 (15)0.0405 (4)
N30.40258 (18)0.64638 (14)0.94250 (14)0.0383 (4)
N40.26829 (19)0.56520 (15)0.95690 (15)0.0463 (4)
N50.25930 (18)0.55592 (16)1.08764 (15)0.0458 (4)
C10.3924 (2)0.63485 (18)1.14668 (18)0.0376 (4)
C20.4501 (2)0.68157 (18)0.80986 (18)0.0456 (5)
H2A0.38100.62230.74400.055*
H2B0.56240.66220.80620.055*
C30.4370 (2)0.83230 (18)0.77215 (18)0.0432 (5)
C40.5765 (2)0.9290 (2)0.8434 (2)0.0572 (6)
H4A0.56511.02230.81650.086*
H4B0.67940.90340.82080.086*
H4C0.57320.92260.93800.086*
C50.4359 (3)0.8413 (2)0.6213 (2)0.0730 (7)
H5A0.34470.78150.57860.110*
H5B0.53630.81330.59570.110*
H5C0.42600.93480.59450.110*
O20.24050 (17)0.15721 (15)0.77069 (15)0.0509 (4)
H2O0.301 (4)0.198 (3)0.831 (3)0.131 (13)*
N60.0533 (3)0.3192 (2)0.24056 (16)0.0523 (5)
H6A−0.054 (3)0.283 (2)0.214 (2)0.065 (7)*
H6B0.093 (2)0.377 (2)0.191 (2)0.057 (7)*
N70.00343 (18)0.29922 (16)0.46818 (14)0.0436 (4)
N80.09725 (18)0.34753 (14)0.57877 (14)0.0382 (4)
N90.23381 (19)0.42091 (16)0.55631 (15)0.0505 (4)
N100.23478 (19)0.42088 (17)0.42439 (15)0.0516 (5)
C60.0940 (2)0.34662 (18)0.37369 (17)0.0377 (4)
C70.0495 (2)0.32626 (18)0.71339 (17)0.0416 (5)
H7A−0.06490.34160.71260.050*
H7B0.11380.39520.77290.050*
C80.0714 (2)0.18313 (18)0.76967 (17)0.0386 (4)
C90.0260 (3)0.1839 (2)0.9121 (2)0.0652 (7)
H9A0.05040.09920.95420.098*
H9B−0.08910.19230.91080.098*
H9C0.08810.26070.96100.098*
C10−0.0294 (3)0.0686 (2)0.6850 (2)0.0573 (6)
H10A0.01330.06300.60050.086*
H10B−0.14160.08800.67100.086*
H10C−0.0237−0.01780.72980.086*
U11U22U33U12U13U23
O10.0434 (8)0.0474 (9)0.0716 (10)0.0081 (7)0.0097 (7)0.0127 (7)
N10.0503 (12)0.0632 (12)0.0421 (11)−0.0055 (10)0.0018 (9)0.0068 (9)
N20.0397 (9)0.0411 (9)0.0389 (9)0.0004 (7)0.0010 (7)0.0029 (7)
N30.0432 (9)0.0329 (8)0.0379 (9)0.0030 (7)0.0023 (7)0.0032 (7)
N40.0500 (10)0.0425 (9)0.0436 (10)−0.0031 (8)0.0008 (7)0.0055 (7)
N50.0436 (10)0.0482 (10)0.0436 (10)−0.0011 (8)0.0021 (7)0.0076 (7)
C10.0356 (10)0.0374 (10)0.0395 (11)0.0052 (8)0.0015 (8)0.0049 (8)
C20.0558 (12)0.0436 (11)0.0389 (11)0.0073 (9)0.0095 (9)0.0002 (9)
C30.0446 (11)0.0401 (11)0.0454 (11)0.0035 (9)0.0083 (9)0.0069 (9)
C40.0513 (13)0.0492 (13)0.0705 (15)−0.0013 (10)0.0098 (11)0.0077 (11)
C50.0948 (19)0.0761 (17)0.0485 (13)0.0069 (14)0.0111 (13)0.0190 (12)
O20.0433 (8)0.0501 (9)0.0586 (10)0.0054 (7)0.0015 (7)0.0067 (7)
N60.0598 (12)0.0577 (12)0.0362 (10)−0.0039 (10)0.0007 (9)0.0061 (8)
N70.0432 (9)0.0492 (10)0.0355 (9)−0.0032 (7)−0.0013 (7)0.0030 (7)
N80.0410 (9)0.0374 (9)0.0347 (9)0.0003 (7)0.0010 (7)0.0052 (7)
N90.0506 (10)0.0563 (11)0.0403 (10)−0.0081 (8)−0.0015 (8)0.0093 (8)
N100.0489 (10)0.0637 (11)0.0390 (9)−0.0062 (8)0.0027 (8)0.0102 (8)
C60.0413 (11)0.0361 (10)0.0357 (10)0.0051 (8)0.0030 (8)0.0059 (8)
C70.0529 (12)0.0379 (11)0.0348 (10)0.0059 (9)0.0078 (9)0.0018 (8)
C80.0396 (11)0.0383 (11)0.0380 (10)0.0031 (8)0.0056 (8)0.0049 (8)
C90.0835 (17)0.0633 (15)0.0513 (13)0.0076 (12)0.0191 (12)0.0159 (11)
C100.0582 (14)0.0447 (12)0.0648 (14)−0.0055 (10)−0.0005 (11)0.0037 (10)
O1—C31.437 (2)O2—C81.443 (2)
O1—H1O0.91 (3)O2—H2O0.82 (3)
N1—C11.362 (2)N6—C61.366 (2)
N1—H1A0.92 (2)N6—H6A0.93 (2)
N1—H1B0.844 (19)N6—H6B0.82 (2)
N2—C11.333 (2)N7—C61.328 (2)
N2—N31.342 (2)N7—N81.339 (2)
N3—N41.310 (2)N8—N91.308 (2)
N3—C21.466 (2)N8—C71.464 (2)
N4—N51.332 (2)N9—N101.332 (2)
N5—C11.349 (2)N10—C61.347 (2)
C2—C31.529 (3)C7—C81.528 (2)
C2—H2A0.9700C7—H7A0.9700
C2—H2B0.9700C7—H7B0.9700
C3—C41.518 (3)C8—C101.515 (3)
C3—C51.524 (3)C8—C91.524 (2)
C4—H4A0.9600C9—H9A0.9600
C4—H4B0.9600C9—H9B0.9600
C4—H4C0.9600C9—H9C0.9600
C5—H5A0.9600C10—H10A0.9600
C5—H5B0.9600C10—H10B0.9600
C5—H5C0.9600C10—H10C0.9600
C3—O1—H1O107.4 (15)C8—O2—H2O113 (2)
C1—N1—H1A117.3 (13)C6—N6—H6A116.9 (13)
C1—N1—H1B113.0 (14)C6—N6—H6B114.9 (15)
H1A—N1—H1B114.2 (18)H6A—N6—H6B115.5 (19)
C1—N2—N3101.66 (14)C6—N7—N8101.56 (14)
N4—N3—N2113.70 (14)N9—N8—N7114.12 (14)
N4—N3—C2121.24 (15)N9—N8—C7122.32 (15)
N2—N3—C2125.06 (14)N7—N8—C7123.51 (14)
N3—N4—N5106.41 (14)N8—N9—N10105.90 (15)
N4—N5—C1105.97 (13)N9—N10—C6106.18 (14)
N2—C1—N5112.25 (16)N7—C6—N10112.23 (16)
N2—C1—N1124.33 (17)N7—C6—N6124.23 (18)
N5—C1—N1123.35 (16)N10—C6—N6123.49 (16)
N3—C2—C3114.27 (14)N8—C7—C8114.86 (14)
N3—C2—H2A108.7N8—C7—H7A108.6
C3—C2—H2A108.7C8—C7—H7A108.6
N3—C2—H2B108.7N8—C7—H7B108.6
C3—C2—H2B108.7C8—C7—H7B108.6
H2A—C2—H2B107.6H7A—C7—H7B107.5
O1—C3—C4110.33 (16)O2—C8—C10106.22 (15)
O1—C3—C5110.39 (16)O2—C8—C9109.55 (15)
C4—C3—C5111.14 (16)C10—C8—C9112.03 (15)
O1—C3—C2105.38 (14)O2—C8—C7109.61 (13)
C4—C3—C2111.81 (16)C10—C8—C7112.28 (15)
C5—C3—C2107.60 (16)C9—C8—C7107.14 (15)
C3—C4—H4A109.5C8—C9—H9A109.5
C3—C4—H4B109.5C8—C9—H9B109.5
H4A—C4—H4B109.5H9A—C9—H9B109.5
C3—C4—H4C109.5C8—C9—H9C109.5
H4A—C4—H4C109.5H9A—C9—H9C109.5
H4B—C4—H4C109.5H9B—C9—H9C109.5
C3—C5—H5A109.5C8—C10—H10A109.5
C3—C5—H5B109.5C8—C10—H10B109.5
H5A—C5—H5B109.5H10A—C10—H10B109.5
C3—C5—H5C109.5C8—C10—H10C109.5
H5A—C5—H5C109.5H10A—C10—H10C109.5
H5B—C5—H5C109.5H10B—C10—H10C109.5
C1—N2—N3—N4−0.60 (19)C6—N7—N8—N91.0 (2)
C1—N2—N3—C2178.59 (15)C6—N7—N8—C7178.36 (15)
N2—N3—N4—N50.2 (2)N7—N8—N9—N10−1.1 (2)
C2—N3—N4—N5−178.98 (14)C7—N8—N9—N10−178.47 (14)
N3—N4—N5—C10.23 (19)N8—N9—N10—C60.6 (2)
N3—N2—C1—N50.74 (19)N8—N7—C6—N10−0.5 (2)
N3—N2—C1—N1−176.40 (17)N8—N7—C6—N6177.00 (17)
N4—N5—C1—N2−0.6 (2)N9—N10—C6—N7−0.1 (2)
N4—N5—C1—N1176.53 (17)N9—N10—C6—N6−177.61 (17)
N4—N3—C2—C3110.47 (19)N9—N8—C7—C8−104.44 (19)
N2—N3—C2—C3−68.7 (2)N7—N8—C7—C878.4 (2)
N3—C2—C3—O1−44.3 (2)N8—C7—C8—O257.7 (2)
N3—C2—C3—C475.5 (2)N8—C7—C8—C10−60.1 (2)
N3—C2—C3—C5−162.14 (16)N8—C7—C8—C9176.52 (15)
D—H···AD—HH···AD···AD—H···A
O1—H1O···O2i0.91 (3)2.04 (3)2.946 (2)171 (2)
N1—H1A···O2ii0.92 (2)2.53 (2)3.243 (2)135 (2)
N1—H1A···N9ii0.92 (2)2.58 (2)3.287 (3)134 (2)
N1—H1B···N10iii0.84 (2)2.24 (2)3.082 (2)173 (2)
O2—H2O···N2ii0.82 (3)2.14 (3)2.930 (2)162 (3)
N6—H6A···O1iv0.93 (2)2.22 (2)3.114 (3)161 (2)
N6—H6B···N5v0.82 (2)2.41 (2)3.213 (2)167 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1O⋯O2i 0.91 (3)2.04 (3)2.946 (2)171 (2)
N1—H1A⋯O2ii 0.92 (2)2.53 (2)3.243 (2)135 (2)
N1—H1A⋯N9ii 0.92 (2)2.58 (2)3.287 (3)134 (2)
N1—H1B⋯N10iii 0.84 (2)2.24 (2)3.082 (2)173 (2)
O2—H2O⋯N2ii 0.82 (3)2.14 (3)2.930 (2)162 (3)
N6—H6A⋯O1iv 0.93 (2)2.22 (2)3.114 (3)161 (2)
N6—H6B⋯N5v 0.82 (2)2.41 (2)3.213 (2)167 (2)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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4.  Crystal structure refinement with SHELXL.

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5.  Structure validation in chemical crystallography.

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