Literature DB >> 26870491

Crystal structure of 1-{(Z)-[(2E)-3-(4-chloro-phen-yl)-1-phenyl-prop-2-en-1-yl-idene]amino}-3-ethyl-thio-urea.

Ming Yueh Tan1, Karen A Crouse1, Thahira Begum S A Ravoof1, Edward R T Tiekink2.   

Abstract

In the title thio-semicarbazone compound, C18H18ClN3S, the CN3S residue is almost planar (r.m.s. deviation = 0.0031 Å) and forms dihedral angles of 65.99 (7) and 34.60 (10)° with the phenyl and chloro-benzene rings, respectively; the dihedral angle between the aromatic rings is 85.13 (8)°. The conformation about the C=N bond is Z, and that about the C=C bonds is E. The imine N and ethyl N atoms are syn and are linked by an eth-yl-imine N-H⋯N hydrogen bond. This H atom also forms an inter-molecular hydrogen bond to the thione S atom, resulting in a supra-molecular helical chain propagating along the b axis. The chains are consolidated into a three-dimensional architecture by phenyl-C-H⋯Cl contacts and weak π-π inter-actions between centrosymmetrically related chloro-benzene rings [inter-centroid distance = 3.9127 (15) Å].

Entities:  

Keywords:  crystal structure; hydrogen bonding; thio­semicarbazone

Year:  2015        PMID: 26870491      PMCID: PMC4719972          DOI: 10.1107/S2056989015023531

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For background to the coordination chemistry and applications of metal thio­semicarbazones, see: Dilworth & Hueting (2012 ▸). For the structure of a closely related thio­semicarbazone compound, 1-benzo­thio­phene-2-carbaldehyde 4-ethyl­thio­semicarbazone, with almost planar semicarbazone units (two mol­ecules comprise the asymmetric unit) and E conformations for the C=N bonds, see: Kayed et al. (2009 ▸).

Experimental

Crystal data

C18H18ClN3S M = 343.86 Monoclinic, a = 10.580 (1) Å b = 12.0438 (9) Å c = 13.9561 (10) Å β = 90.196 (8)° V = 1778.3 (2) Å3 Z = 4 Mo Kα radiation μ = 0.33 mm−1 T = 293 K 0.20 × 0.15 × 0.10 mm

Data collection

Agilent SuperNova Dual diffractometer with an Atlas detector Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2013 ▸) T min = 0.800, T max = 1.000 11178 measured reflections 4078 independent reflections 1963 reflections with I > 2σ(I) R int = 0.051

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.120 S = 1.00 4078 reflections 216 parameters 2 restraints H-atom parameters constrained Δρmax = 0.20 e Å−3 Δρmin = −0.25 e Å−3

Data collection: CrysAlis PRO (Agilent, 2013 ▸); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015 ▸); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▸) and DIAMOND (Brandenburg, 2006 ▸); software used to prepare material for publication: publCIF (Westrip, 2010 ▸). Crystal structure: contains datablock(s) 1, I. DOI: 10.1107/S2056989015023531/hb7555sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015023531/hb7555Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015023531/hb7555Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015023531/hb7555fig1.tif The mol­ecular structure of the title compound showing displacement ellipsoids at the 50% probability level. Click here for additional data file. b . DOI: 10.1107/S2056989015023531/hb7555fig2.tif A view of the helical supra­molecular chain along the b axis and sustained by N—H⋯S hydrogen bonds shown as orange dashed lines. Click here for additional data file. a . DOI: 10.1107/S2056989015023531/hb7555fig3.tif A view of the unit cell contents in projection down the a axis. The N—H⋯S (orange), C—H⋯Cl (blue) and π—π (purple) inter­actions are shown as dashed lines. CCDC reference: 1441045 Additional supporting information: crystallographic information; 3D view; checkCIF report
C18H18ClN3SF(000) = 720
Mr = 343.86Dx = 1.284 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 10.580 (1) ÅCell parameters from 2181 reflections
b = 12.0438 (9) Åθ = 2.9–27.5°
c = 13.9561 (10) ŵ = 0.33 mm1
β = 90.196 (8)°T = 293 K
V = 1778.3 (2) Å3Prism, light-brown
Z = 40.20 × 0.15 × 0.10 mm
Agilent SuperNova Dual diffractometer with an Atlas detector4078 independent reflections
Radiation source: SuperNova (Mo) X-ray Source1963 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.051
Detector resolution: 10.4041 pixels mm-1θmax = 27.5°, θmin = 2.9°
ω scanh = −13→12
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2013)k = −14→15
Tmin = 0.800, Tmax = 1.000l = −18→18
11178 measured reflections
Refinement on F2Hydrogen site location: mixed
Least-squares matrix: fullH-atom parameters constrained
R[F2 > 2σ(F2)] = 0.038w = 1/[σ2(Fo2) + (0.0463P)2] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.120(Δ/σ)max = 0.001
S = 1.00Δρmax = 0.20 e Å3
4078 reflectionsΔρmin = −0.25 e Å3
216 parametersExtinction correction: SHELXL2014 (Sheldrick, 2014), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
2 restraintsExtinction coefficient: 0.0044 (7)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
S11.05835 (7)−0.02341 (6)0.20649 (5)0.0606 (2)
Cl10.48690 (8)0.72659 (6)0.71676 (5)0.0754 (3)
N11.0584 (2)0.19712 (18)0.23053 (16)0.0579 (6)
H1N1.025 (2)0.2566 (14)0.2562 (18)0.070*
N20.9246 (2)0.09776 (16)0.32430 (15)0.0543 (6)
H2N0.900 (2)0.0320 (11)0.3439 (17)0.065*
N30.88627 (18)0.19560 (15)0.36594 (14)0.0484 (5)
C11.0138 (2)0.0979 (2)0.25424 (18)0.0470 (6)
C21.1491 (2)0.2179 (2)0.1541 (2)0.0636 (8)
H2A1.20650.15530.14940.076*
H2B1.19860.28320.16990.076*
C31.0860 (3)0.2351 (4)0.0601 (2)0.1085 (13)
H3A1.03930.16960.04310.163*
H3B1.14850.24970.01210.163*
H3C1.02920.29710.06430.163*
C40.8004 (2)0.18918 (18)0.43172 (16)0.0420 (6)
C50.7641 (2)0.29357 (18)0.47552 (16)0.0443 (6)
H50.81010.35650.45920.053*
C60.6697 (2)0.30579 (18)0.53736 (16)0.0434 (6)
H60.62540.24190.55370.052*
C70.6281 (2)0.40943 (18)0.58244 (16)0.0409 (6)
C80.5030 (2)0.42061 (19)0.61122 (16)0.0463 (6)
H80.44770.36140.60260.056*
C90.4589 (3)0.5176 (2)0.65233 (16)0.0517 (7)
H90.37490.52400.67080.062*
C100.5415 (3)0.60409 (19)0.66531 (16)0.0504 (7)
C110.6661 (3)0.5955 (2)0.63902 (18)0.0576 (7)
H110.72090.65480.64890.069*
C120.7099 (3)0.49840 (19)0.59786 (18)0.0529 (7)
H120.79430.49250.58040.063*
C410.7411 (2)0.08309 (17)0.46264 (17)0.0391 (6)
C420.6659 (2)0.02282 (19)0.39972 (17)0.0446 (6)
H420.65250.04880.33770.054*
C430.6108 (2)−0.07542 (19)0.42866 (19)0.0506 (7)
H430.5608−0.11560.38600.061*
C440.6294 (2)−0.1139 (2)0.5200 (2)0.0550 (7)
H440.5916−0.17990.53940.066*
C450.7037 (2)−0.0552 (2)0.58311 (19)0.0553 (7)
H450.7163−0.08170.64500.066*
C460.7597 (2)0.0428 (2)0.55490 (17)0.0491 (6)
H460.81010.08210.59780.059*
U11U22U33U12U13U23
S10.0614 (5)0.0544 (4)0.0661 (5)0.0084 (3)0.0204 (4)−0.0080 (4)
Cl10.1222 (7)0.0502 (4)0.0539 (4)0.0289 (4)0.0068 (4)−0.0074 (3)
N10.0567 (14)0.0503 (14)0.0670 (15)−0.0007 (11)0.0263 (12)0.0014 (12)
N20.0638 (14)0.0380 (12)0.0614 (13)0.0005 (10)0.0292 (11)−0.0016 (11)
N30.0531 (12)0.0375 (11)0.0548 (12)0.0017 (9)0.0176 (11)−0.0023 (10)
C10.0433 (14)0.0470 (16)0.0506 (14)0.0010 (11)0.0098 (12)−0.0017 (13)
C20.0500 (16)0.0699 (18)0.0710 (19)−0.0065 (13)0.0207 (15)0.0061 (16)
C30.078 (2)0.172 (4)0.076 (2)−0.021 (2)0.006 (2)0.031 (3)
C40.0426 (14)0.0386 (14)0.0450 (14)−0.0014 (10)0.0090 (12)−0.0001 (12)
C50.0482 (15)0.0349 (13)0.0500 (14)−0.0011 (10)0.0094 (12)−0.0001 (11)
C60.0465 (14)0.0378 (14)0.0459 (14)−0.0015 (10)0.0062 (12)−0.0017 (11)
C70.0491 (15)0.0368 (13)0.0368 (13)0.0022 (11)0.0066 (11)0.0014 (11)
C80.0537 (16)0.0411 (14)0.0442 (14)0.0000 (11)0.0115 (12)0.0051 (12)
C90.0611 (17)0.0494 (16)0.0448 (15)0.0155 (13)0.0141 (13)0.0075 (13)
C100.079 (2)0.0373 (14)0.0348 (13)0.0122 (13)0.0034 (13)−0.0021 (12)
C110.0728 (19)0.0446 (16)0.0555 (16)−0.0044 (13)−0.0035 (15)−0.0065 (14)
C120.0543 (17)0.0489 (16)0.0555 (16)−0.0019 (12)0.0096 (13)−0.0080 (13)
C410.0404 (13)0.0342 (13)0.0427 (14)0.0028 (10)0.0110 (11)−0.0028 (11)
C420.0470 (15)0.0450 (14)0.0419 (13)0.0016 (11)0.0075 (12)−0.0019 (12)
C430.0538 (16)0.0433 (14)0.0547 (17)−0.0066 (12)0.0098 (13)−0.0102 (13)
C440.0603 (17)0.0396 (14)0.0652 (18)−0.0061 (12)0.0154 (15)0.0042 (14)
C450.0653 (18)0.0503 (16)0.0502 (15)0.0011 (13)0.0076 (14)0.0104 (14)
C460.0532 (16)0.0472 (15)0.0469 (15)−0.0046 (12)0.0003 (12)−0.0003 (13)
S1—C11.674 (2)C7—C81.392 (3)
Cl1—C101.740 (2)C7—C121.393 (3)
N1—C11.327 (3)C8—C91.383 (3)
N1—C21.459 (3)C8—H80.9300
N1—H1N0.874 (10)C9—C101.372 (4)
N2—C11.361 (3)C9—H90.9300
N2—N31.376 (2)C10—C111.373 (4)
N2—H2N0.878 (10)C11—C121.384 (3)
N3—C41.296 (2)C11—H110.9300
C2—C31.484 (4)C12—H120.9300
C2—H2A0.9700C41—C421.388 (3)
C2—H2B0.9700C41—C461.389 (3)
C3—H3A0.9600C42—C431.380 (3)
C3—H3B0.9600C42—H420.9300
C3—H3C0.9600C43—C441.370 (3)
C4—C51.450 (3)C43—H430.9300
C4—C411.488 (3)C44—C451.375 (4)
C5—C61.330 (3)C44—H440.9300
C5—H50.9300C45—C461.379 (3)
C6—C71.466 (3)C45—H450.9300
C6—H60.9300C46—H460.9300
C1—N1—C2124.9 (2)C9—C8—C7121.6 (2)
C1—N1—H1N119.5 (17)C9—C8—H8119.2
C2—N1—H1N115.1 (17)C7—C8—H8119.2
C1—N2—N3120.56 (18)C10—C9—C8118.7 (2)
C1—N2—H2N115.5 (16)C10—C9—H9120.6
N3—N2—H2N123.6 (16)C8—C9—H9120.6
C4—N3—N2117.15 (18)C9—C10—C11121.3 (2)
N1—C1—N2115.3 (2)C9—C10—Cl1119.1 (2)
N1—C1—S1125.86 (17)C11—C10—Cl1119.6 (2)
N2—C1—S1118.80 (17)C10—C11—C12119.8 (2)
N1—C2—C3112.0 (2)C10—C11—H11120.1
N1—C2—H2A109.2C12—C11—H11120.1
C3—C2—H2A109.2C11—C12—C7120.4 (2)
N1—C2—H2B109.2C11—C12—H12119.8
C3—C2—H2B109.2C7—C12—H12119.8
H2A—C2—H2B107.9C42—C41—C46118.9 (2)
C2—C3—H3A109.5C42—C41—C4120.5 (2)
C2—C3—H3B109.5C46—C41—C4120.7 (2)
H3A—C3—H3B109.5C43—C42—C41120.3 (2)
C2—C3—H3C109.5C43—C42—H42119.8
H3A—C3—H3C109.5C41—C42—H42119.8
H3B—C3—H3C109.5C44—C43—C42120.2 (2)
N3—C4—C5115.73 (19)C44—C43—H43119.9
N3—C4—C41123.63 (19)C42—C43—H43119.9
C5—C4—C41120.64 (18)C43—C44—C45120.1 (2)
C6—C5—C4124.7 (2)C43—C44—H44119.9
C6—C5—H5117.6C45—C44—H44119.9
C4—C5—H5117.6C44—C45—C46120.2 (2)
C5—C6—C7126.8 (2)C44—C45—H45119.9
C5—C6—H6116.6C46—C45—H45119.9
C7—C6—H6116.6C45—C46—C41120.2 (2)
C8—C7—C12118.1 (2)C45—C46—H46119.9
C8—C7—C6119.6 (2)C41—C46—H46119.9
C12—C7—C6122.3 (2)
C1—N2—N3—C4179.6 (2)C9—C10—C11—C120.5 (4)
C2—N1—C1—N2−176.5 (2)Cl1—C10—C11—C12−179.8 (2)
C2—N1—C1—S13.9 (4)C10—C11—C12—C70.3 (4)
N3—N2—C1—N1−0.2 (4)C8—C7—C12—C11−1.2 (4)
N3—N2—C1—S1179.39 (19)C6—C7—C12—C11178.8 (2)
C1—N1—C2—C387.9 (4)N3—C4—C41—C42−65.7 (3)
N2—N3—C4—C5178.8 (2)C5—C4—C41—C42114.7 (2)
N2—N3—C4—C41−0.9 (4)N3—C4—C41—C46114.5 (3)
N3—C4—C5—C6173.2 (2)C5—C4—C41—C46−65.2 (3)
C41—C4—C5—C6−7.1 (4)C46—C41—C42—C430.0 (3)
C4—C5—C6—C7−179.0 (2)C4—C41—C42—C43−179.9 (2)
C5—C6—C7—C8152.8 (2)C41—C42—C43—C440.3 (3)
C5—C6—C7—C12−27.2 (4)C42—C43—C44—C45−0.4 (4)
C12—C7—C8—C91.3 (3)C43—C44—C45—C460.1 (4)
C6—C7—C8—C9−178.7 (2)C44—C45—C46—C410.2 (4)
C7—C8—C9—C10−0.4 (4)C42—C41—C46—C45−0.2 (3)
C8—C9—C10—C11−0.5 (4)C4—C41—C46—C45179.6 (2)
C8—C9—C10—Cl1179.87 (18)
D—H···AD—HH···AD···AD—H···A
N1—H1N···N30.88 (2)2.25 (2)2.629 (3)106 (2)
N1—H1N···S1i0.88 (2)2.84 (2)3.693 (2)165 (2)
C43—H43···Cl1ii0.932.823.708 (3)160
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1N⋯N30.88 (2)2.25 (2)2.629 (3)106 (2)
N1—H1N⋯S1i 0.88 (2)2.84 (2)3.693 (2)165 (2)
C43—H43⋯Cl1ii 0.932.823.708 (3)160

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  1-Benzothio-phene-2-carbaldehyde 4-ethyl-thio-semicarbazone.

Authors:  Safa'a Fares Kayed; Yang Farina; Jim Simpson
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-12-20

3.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

  3 in total

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