Literature DB >> 26870473

Crystal structure of 2-amino-4-(4-meth-oxy-phen-yl)-4H-benzo[g]chromene-3-carbo-nitrile.

Joel T Mague1, Shaaban K Mohamed2, Mehmet Akkurt3, Sabry H H Younes4, Mustafa R Albayati5.   

Abstract

In the title compound, C21H16N2O2, the naphthalene fragment is twisted slightly, as indicated by the dihedral angle of 3.2 (2)° between the two six-membered rings. The pendant 4-meth-oxy-phenyl ring makes a dihedral angle of 86.08 (6)° with the central six-membered ring of the 4H-benzo[g]chromene ring system. In the crystal, mol-ecules are linked by pairs of N-H⋯N hydrogen bonds, forming inversion dimers which are linked into chains propagating in the b-axis direction by N-H⋯O hydrogen bonds.

Entities:  

Keywords:  2-amino-3-cyano-4H-chromene derivatives; 4H-chromene and fused 4H-chromene derivatives; benzo­pyrans; chromenes; crystal structure; hydrogen bonding

Year:  2015        PMID: 26870473      PMCID: PMC4719954          DOI: 10.1107/S205698901502280X

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For the chemical and pharmacological properties of 4H-chromene and fused 4H-chromene derivatives, see: Bonsignore et al. (1993 ▸); Martínez-Grau & Marco (1997 ▸); Abd-El-Aziz et al. (2007 ▸); Sabry et al. (2011 ▸). For the synthesis and biological activities of 2-amino-3-cyano-4H-chromene derivatives, see: Kemnitzer et al. (2005 ▸); Patil et al. (2012 ▸); Kumar et al. (2009 ▸).

Experimental

Crystal data

C21H16N2O2 M = 328.36 Triclinic, a = 6.3833 (2) Å b = 10.6009 (3) Å c = 13.0915 (4) Å α = 108.823 (2)° β = 95.906 (2)° γ = 97.467 (2)° V = 821.44 (4) Å3 Z = 2 Cu Kα radiation μ = 0.69 mm−1 T = 150 K 0.26 × 0.20 × 0.02 mm

Data collection

Bruker D8 VENTURE PHOTON 100 CMOS diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2015 ▸) T min = 0.78, T max = 0.99 6215 measured reflections 3039 independent reflections 2074 reflections with I > 2σ(I) R int = 0.048

Refinement

R[F 2 > 2σ(F 2)] = 0.057 wR(F 2) = 0.151 S = 1.03 3039 reflections 235 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.18 e Å−3 Δρmin = −0.22 e Å−3

Data collection: APEX2 (Bruker, 2015 ▸); cell refinement: SAINT (Bruker, 2015 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXT (Sheldrick, 2015a ▸); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015b ▸); molecular graphics: DIAMOND (Brandenburg & Putz, 2012 ▸); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▸). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S205698901502280X/su5248sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S205698901502280X/su5248Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S205698901502280X/su5248Isup3.cml Click here for additional data file. . DOI: 10.1107/S205698901502280X/su5248fig1.tif The mol­ecular structure of the title compound with the labeling scheme and 50% probability displacement ellipsoids. Click here for additional data file. c . DOI: 10.1107/S205698901502280X/su5248fig2.tif View along the c axis of one hydrogen-bonded layer. The N—H⋯N and N—H⋯O hydrogen bonds (see Table 1) are shown as blue and purple dotted lines, respectively. Click here for additional data file. . DOI: 10.1107/S205698901502280X/su5248fig3.tif Crystal packing viewed along the c axis, with the N—H⋯N and N—H⋯O hydrogen bonds (see Table 1) shown as blue and purple dotted lines, respectively. CCDC reference: 1439459 Additional supporting information: crystallographic information; 3D view; checkCIF report
C21H16N2O2Z = 2
Mr = 328.36F(000) = 344
Triclinic, P1Dx = 1.328 Mg m3
a = 6.3833 (2) ÅCu Kα radiation, λ = 1.54178 Å
b = 10.6009 (3) ÅCell parameters from 3044 reflections
c = 13.0915 (4) Åθ = 3.6–72.4°
α = 108.823 (2)°µ = 0.69 mm1
β = 95.906 (2)°T = 150 K
γ = 97.467 (2)°Plate, colourless
V = 821.44 (4) Å30.26 × 0.20 × 0.02 mm
Bruker D8 VENTURE PHOTON 100 CMOS diffractometer3039 independent reflections
Radiation source: INCOATEC IµS micro–focus source2074 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.048
Detector resolution: 10.4167 pixels mm-1θmax = 72.4°, θmin = 3.6°
ω scansh = −7→6
Absorption correction: multi-scan (SADABS; Bruker, 2015)k = −12→13
Tmin = 0.78, Tmax = 0.99l = −16→16
6215 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.057Hydrogen site location: mixed
wR(F2) = 0.151H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0739P)2 + 0.065P] where P = (Fo2 + 2Fc2)/3
3039 reflections(Δ/σ)max < 0.001
235 parametersΔρmax = 0.18 e Å3
0 restraintsΔρmin = −0.22 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. H-atoms attached to carbon were placed in calculated positions (C—H = 0.95 − 1.00 Å). All were included as riding contributions with isotropic displacement parameters 1.2 − 1.5 times those of the attached atoms.
xyzUiso*/Ueq
O10.3785 (2)0.96970 (14)0.76705 (13)0.0403 (4)
O20.3737 (3)0.29798 (15)0.88255 (14)0.0498 (5)
N11.0346 (3)0.8671 (2)0.90170 (17)0.0471 (5)
N20.6393 (3)1.08806 (19)0.90280 (19)0.0475 (6)
H2A0.741 (5)1.101 (3)0.966 (2)0.060 (8)*
H2B0.559 (5)1.159 (3)0.909 (2)0.064 (8)*
C10.5666 (3)0.9677 (2)0.82491 (19)0.0368 (5)
C20.6619 (3)0.8565 (2)0.80085 (18)0.0357 (5)
C30.5665 (3)0.7233 (2)0.71189 (18)0.0369 (5)
H30.67560.69710.66290.044*
C40.3733 (3)0.7425 (2)0.64460 (18)0.0369 (5)
C50.2723 (4)0.6386 (2)0.5477 (2)0.0438 (6)
H50.33250.55870.52290.053*
C60.0909 (4)0.6488 (2)0.4883 (2)0.0451 (6)
H60.02900.57780.42230.054*
C7−0.0054 (4)0.7651 (2)0.52499 (19)0.0395 (5)
C8−0.2030 (4)0.7755 (3)0.4698 (2)0.0483 (6)
H8−0.27320.70310.40630.058*
C9−0.2917 (4)0.8878 (3)0.5073 (2)0.0527 (7)
H9−0.42370.89350.46970.063*
C10−0.1911 (4)0.9956 (3)0.6005 (2)0.0512 (6)
H10−0.25591.07350.62560.061*
C11−0.0004 (4)0.9904 (2)0.6562 (2)0.0437 (6)
H110.06741.06460.71890.052*
C120.0955 (3)0.8731 (2)0.61949 (19)0.0372 (5)
C130.2878 (3)0.8580 (2)0.67621 (18)0.0356 (5)
C140.8674 (4)0.8653 (2)0.85785 (19)0.0387 (5)
C150.5109 (3)0.6109 (2)0.75824 (18)0.0353 (5)
C160.3363 (4)0.6046 (2)0.8117 (2)0.0414 (6)
H160.24870.67200.81900.050*
C170.2843 (4)0.5033 (2)0.8551 (2)0.0438 (6)
H170.16310.50170.89140.053*
C180.4117 (4)0.4042 (2)0.84493 (19)0.0395 (5)
C190.5888 (4)0.4095 (2)0.79246 (19)0.0417 (6)
H190.67720.34260.78580.050*
C200.6375 (4)0.5111 (2)0.74989 (19)0.0400 (5)
H200.75950.51320.71420.048*
C210.1919 (5)0.2878 (3)0.9351 (2)0.0562 (7)
H21A0.20680.36721.00130.084*
H21B0.18030.20570.95470.084*
H21C0.06310.28330.88550.084*
U11U22U33U12U13U23
O10.0357 (8)0.0340 (8)0.0500 (10)0.0045 (6)−0.0064 (7)0.0171 (7)
O20.0608 (11)0.0361 (8)0.0593 (11)0.0072 (7)0.0046 (9)0.0271 (8)
N10.0425 (12)0.0469 (11)0.0494 (13)0.0127 (9)−0.0028 (10)0.0141 (10)
N20.0478 (13)0.0318 (10)0.0568 (14)0.0053 (8)−0.0132 (10)0.0138 (10)
C10.0327 (12)0.0353 (11)0.0452 (13)0.0006 (8)−0.0021 (10)0.0221 (10)
C20.0317 (12)0.0361 (11)0.0414 (13)0.0037 (8)0.0003 (9)0.0183 (10)
C30.0355 (12)0.0365 (11)0.0411 (13)0.0061 (9)0.0043 (10)0.0169 (10)
C40.0357 (12)0.0369 (11)0.0407 (13)0.0021 (9)0.0034 (9)0.0190 (10)
C50.0462 (14)0.0405 (12)0.0448 (14)0.0063 (10)0.0045 (11)0.0159 (11)
C60.0452 (14)0.0477 (13)0.0397 (13)−0.0015 (10)−0.0010 (11)0.0173 (11)
C70.0363 (12)0.0440 (12)0.0425 (13)−0.0015 (9)0.0013 (10)0.0252 (11)
C80.0405 (14)0.0583 (15)0.0473 (15)−0.0045 (11)−0.0047 (11)0.0282 (12)
C90.0385 (14)0.0650 (16)0.0605 (17)0.0047 (11)−0.0042 (12)0.0349 (14)
C100.0418 (14)0.0567 (15)0.0630 (17)0.0120 (11)0.0006 (12)0.0320 (14)
C110.0429 (13)0.0421 (12)0.0507 (14)0.0055 (10)0.0009 (11)0.0246 (11)
C120.0340 (12)0.0415 (12)0.0420 (13)0.0010 (9)0.0025 (10)0.0254 (10)
C130.0344 (12)0.0351 (11)0.0389 (12)−0.0012 (8)0.0003 (9)0.0191 (10)
C140.0416 (14)0.0333 (11)0.0424 (13)0.0069 (9)0.0037 (10)0.0152 (10)
C150.0386 (12)0.0305 (10)0.0372 (12)0.0071 (8)0.0010 (9)0.0130 (9)
C160.0448 (14)0.0347 (11)0.0521 (15)0.0147 (9)0.0132 (11)0.0199 (11)
C170.0476 (14)0.0364 (12)0.0522 (15)0.0098 (10)0.0119 (11)0.0195 (11)
C180.0495 (14)0.0282 (10)0.0398 (13)0.0029 (9)−0.0034 (10)0.0148 (10)
C190.0495 (14)0.0322 (11)0.0450 (14)0.0134 (9)0.0011 (11)0.0147 (10)
C200.0381 (13)0.0388 (12)0.0429 (13)0.0090 (9)0.0045 (10)0.0131 (10)
C210.0716 (18)0.0427 (13)0.0585 (17)0.0007 (12)0.0089 (14)0.0269 (13)
O1—C11.359 (3)C8—C91.355 (4)
O1—C131.387 (3)C8—H80.9500
O2—C181.372 (3)C9—C101.399 (4)
O2—C211.418 (3)C9—H90.9500
N1—C141.154 (3)C10—C111.370 (3)
N2—C11.339 (3)C10—H100.9500
N2—H2A0.96 (3)C11—C121.423 (3)
N2—H2B0.95 (3)C11—H110.9500
C1—C21.359 (3)C12—C131.422 (3)
C2—C141.417 (3)C15—C161.381 (3)
C2—C31.513 (3)C15—C201.396 (3)
C3—C41.516 (3)C16—C171.387 (3)
C3—C151.522 (3)C16—H160.9500
C3—H31.0000C17—C181.391 (3)
C4—C131.365 (3)C17—H170.9500
C4—C51.409 (3)C18—C191.386 (3)
C5—C61.363 (3)C19—C201.380 (3)
C5—H50.9500C19—H190.9500
C6—C71.415 (3)C20—H200.9500
C6—H60.9500C21—H21A0.9800
C7—C121.409 (3)C21—H21B0.9800
C7—C81.423 (3)C21—H21C0.9800
C1—O1—C13119.06 (17)C11—C10—H10119.6
C18—O2—C21117.97 (18)C9—C10—H10119.6
C1—N2—H2A123.6 (16)C10—C11—C12119.6 (2)
C1—N2—H2B119.0 (17)C10—C11—H11120.2
H2A—N2—H2B115 (2)C12—C11—H11120.2
N2—C1—C2127.4 (2)C7—C12—C13118.0 (2)
N2—C1—O1110.53 (18)C7—C12—C11119.3 (2)
C2—C1—O1122.1 (2)C13—C12—C11122.6 (2)
C1—C2—C14119.1 (2)C4—C13—O1123.04 (19)
C1—C2—C3123.89 (19)C4—C13—C12122.7 (2)
C14—C2—C3116.96 (18)O1—C13—C12114.30 (18)
C2—C3—C4109.13 (17)N1—C14—C2177.3 (2)
C2—C3—C15111.84 (18)C16—C15—C20117.4 (2)
C4—C3—C15111.76 (18)C16—C15—C3121.60 (18)
C2—C3—H3108.0C20—C15—C3121.0 (2)
C4—C3—H3108.0C15—C16—C17122.3 (2)
C15—C3—H3108.0C15—C16—H16118.8
C13—C4—C5117.7 (2)C17—C16—H16118.8
C13—C4—C3121.9 (2)C16—C17—C18119.3 (2)
C5—C4—C3120.39 (19)C16—C17—H17120.4
C6—C5—C4122.1 (2)C18—C17—H17120.4
C6—C5—H5118.9O2—C18—C19116.25 (19)
C4—C5—H5118.9O2—C18—C17124.5 (2)
C5—C6—C7120.1 (2)C19—C18—C17119.3 (2)
C5—C6—H6120.0C20—C19—C18120.5 (2)
C7—C6—H6120.0C20—C19—H19119.8
C12—C7—C6119.2 (2)C18—C19—H19119.8
C12—C7—C8118.9 (2)C19—C20—C15121.3 (2)
C6—C7—C8121.8 (2)C19—C20—H20119.4
C9—C8—C7120.4 (2)C15—C20—H20119.4
C9—C8—H8119.8O2—C21—H21A109.5
C7—C8—H8119.8O2—C21—H21B109.5
C8—C9—C10120.8 (2)H21A—C21—H21B109.5
C8—C9—H9119.6O2—C21—H21C109.5
C10—C9—H9119.6H21A—C21—H21C109.5
C11—C10—C9120.9 (2)H21B—C21—H21C109.5
C13—O1—C1—N2174.13 (19)C10—C11—C12—C71.2 (3)
C13—O1—C1—C2−4.3 (3)C10—C11—C12—C13−176.9 (2)
N2—C1—C2—C14−4.0 (4)C5—C4—C13—O1−176.9 (2)
O1—C1—C2—C14174.2 (2)C3—C4—C13—O14.8 (3)
N2—C1—C2—C3179.2 (2)C5—C4—C13—C124.2 (3)
O1—C1—C2—C3−2.6 (3)C3—C4—C13—C12−174.2 (2)
C1—C2—C3—C49.3 (3)C1—O1—C13—C43.3 (3)
C14—C2—C3—C4−167.6 (2)C1—O1—C13—C12−177.71 (19)
C1—C2—C3—C15−114.9 (2)C7—C12—C13—C4−2.0 (3)
C14—C2—C3—C1568.2 (3)C11—C12—C13—C4176.1 (2)
C2—C3—C4—C13−10.2 (3)C7—C12—C13—O1178.94 (18)
C15—C3—C4—C13114.1 (2)C11—C12—C13—O1−2.9 (3)
C2—C3—C4—C5171.5 (2)C2—C3—C15—C1674.0 (3)
C15—C3—C4—C5−64.3 (3)C4—C3—C15—C16−48.7 (3)
C13—C4—C5—C6−2.3 (3)C2—C3—C15—C20−104.9 (2)
C3—C4—C5—C6176.1 (2)C4—C3—C15—C20132.4 (2)
C4—C5—C6—C7−1.7 (4)C20—C15—C16—C17−0.6 (3)
C5—C6—C7—C123.9 (3)C3—C15—C16—C17−179.5 (2)
C5—C6—C7—C8−175.3 (2)C15—C16—C17—C180.0 (4)
C12—C7—C8—C90.4 (3)C21—O2—C18—C19−178.9 (2)
C6—C7—C8—C9179.6 (2)C21—O2—C18—C170.3 (3)
C7—C8—C9—C100.1 (4)C16—C17—C18—O2−178.6 (2)
C8—C9—C10—C110.1 (4)C16—C17—C18—C190.6 (3)
C9—C10—C11—C12−0.8 (4)O2—C18—C19—C20178.7 (2)
C6—C7—C12—C13−2.1 (3)C17—C18—C19—C20−0.6 (3)
C8—C7—C12—C13177.1 (2)C18—C19—C20—C150.0 (3)
C6—C7—C12—C11179.7 (2)C16—C15—C20—C190.6 (3)
C8—C7—C12—C11−1.1 (3)C3—C15—C20—C19179.5 (2)
D—H···AD—HH···AD···AD—H···A
N2—H2A···N1i0.96 (3)2.03 (3)2.995 (3)178 (3)
N2—H2B···O2ii0.95 (3)2.10 (3)3.028 (3)166 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H2A⋯N1i 0.96 (3)2.03 (3)2.995 (3)178 (3)
N2—H2B⋯O2ii 0.95 (3)2.10 (3)3.028 (3)166 (2)

Symmetry codes: (i) ; (ii) .

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5.  A facile one-pot green synthesis and antibacterial activity of 2-amino-4H-pyrans and 2-amino-5-oxo-5,6,7,8-tetrahydro-4H-chromenes.

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Journal:  Acta Crystallogr A Found Adv       Date:  2015-01-01       Impact factor: 2.290

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