Literature DB >> 26870472

Crystal structure of (tert-butyl-dimethyl-sil-yl)tri-phenyl-germane, Ph3Ge-SiMe2(t-Bu).

Kirill V Zaitsev1, Galina S Zaitseva1, Sergey S Karlov1, Alexander A Korlyukov2.   

Abstract

In the title compound, Ph3Ge-SiMe2(t-Bu) or C24H30GeSi, the Si and Ge atoms both possess a tetra-hedral coordination environment with C-E-C (E = Si, Ge) angles in the range 104.47 (5)-114.67 (5)°. The mol-ecule adopts an eclipsed conformation, with three torsion angles less than 29.5°. In the crystal, neighbouring mol-ecules are combined to dimers by six T-shaped C-H⋯π inter-actions, forming sixfold phenyl embraces (6PE).

Entities:  

Keywords:  6PE inter­actions; C—H⋯π inter­actions; catenated compounds; crystal structure; silagermanes

Year:  2015        PMID: 26870472      PMCID: PMC4719953          DOI: 10.1107/S2056989015022872

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For general background to the chemistry of Group 14 element catenated compounds, see: Marschner & Hlina (2013 ▸); Amadoruge & Weinert (2008 ▸); Párkányi et al. (1986 ▸); Leigh et al. (1997 ▸). As apart of our studies of the chemistry of oligogermanium compounds (Zaitsev et al. 2012 ▸, 2013 ▸, 2014a ▸,b ▸), the title compound was obtained and studied. For related crystal structures of silagermanes, see: Zaitsev et al. (2015 ▸). The 6PE inter­actions are intensively discussed in Scudder & Dance (2000 ▸); Steiner (2000 ▸); Churakov et al. (2005 ▸).

Experimental

Crystal data

C24H30GeSi M = 419.16 Monoclinic, a = 13.5332 (6) Å b = 14.9825 (7) Å c = 22.7179 (13) Å β = 106.2048 (10)° V = 4423.3 (4) Å3 Z = 8 Mo Kα radiation μ = 1.44 mm−1 T = 120 K 0.32 × 0.29 × 0.24 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2013 ▸) T min = 0.720, T max = 0.862 32242 measured reflections 7990 independent reflections 6137 reflections with I > 2σ(I) R int = 0.043

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.071 S = 1.01 7990 reflections 240 parameters H-atom parameters constrained Δρmax = 0.43 e Å−3 Δρmin = −0.37 e Å−3

Data collection: APEX2 (Bruker, 2013 ▸); cell refinement: SAINT (Bruker, 2013 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS2014 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015 ▸); molecular graphics: OLEX2 (Dolomanov et al., 2009 ▸); software used to prepare material for publication: OLEX2. Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989015022872/im2474sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015022872/im2474Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015022872/im2474Isup3.mol Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015022872/im2474Isup4.cml Click here for additional data file. . DOI: 10.1107/S2056989015022872/im2474fig1.tif Mol­ecular structure of the title compound, with displacement ellipsoids shown at the 50% probability level. Click here for additional data file. . DOI: 10.1107/S2056989015022872/im2474fig2.tif Dimers formed by 6PE inter­actions between adjacent mol­ecules. CCDC reference: 1439529 Additional supporting information: crystallographic information; 3D view; checkCIF report
C24H30GeSiF(000) = 1760
Mr = 419.16Dx = 1.259 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
a = 13.5332 (6) ÅCell parameters from 8565 reflections
b = 14.9825 (7) Åθ = 2.5–31.7°
c = 22.7179 (13) ŵ = 1.44 mm1
β = 106.2048 (10)°T = 120 K
V = 4423.3 (4) Å3Irregular, colourless
Z = 80.32 × 0.29 × 0.24 mm
Bruker SMART APEXII CCD area-detector diffractometer7990 independent reflections
Radiation source: sealed tube6137 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.043
Detector resolution: 8 pixels mm-1θmax = 32.6°, θmin = 1.9°
ω and φ scansh = −19→20
Absorption correction: multi-scan (SADABS; Bruker, 2013)k = −22→22
Tmin = 0.720, Tmax = 0.862l = −33→34
32242 measured reflections
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.033H-atom parameters constrained
wR(F2) = 0.071w = 1/[σ2(Fo2) + (0.0303P)2 + 1.8636P] where P = (Fo2 + 2Fc2)/3
S = 1.01(Δ/σ)max = 0.002
7990 reflectionsΔρmax = 0.43 e Å3
240 parametersΔρmin = −0.37 e Å3
Experimental. Absorption correctgion: SADABS2008/1 (Bruker,2008) was used for absorption correction. wR2(int) was 0.0820 before and 0.0431 after correction. The Ratio of minimum to maximum transmission is 0.8344. The λ/2 correction factor is 0.0015.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
Ge10.36354 (2)0.03558 (2)0.37248 (2)0.01369 (4)
Si10.26294 (3)0.07258 (3)0.27044 (2)0.01566 (8)
C10.19468 (11)−0.02626 (9)0.22333 (7)0.0193 (3)
C20.14760 (13)−0.08808 (11)0.26222 (8)0.0280 (3)
H2A0.2015−0.11350.29470.042*
H2B0.1099−0.13500.23690.042*
H2C0.1020−0.05440.27940.042*
C30.10842 (13)0.00982 (12)0.16951 (8)0.0286 (4)
H3A0.05820.03990.18490.043*
H3B0.0763−0.03880.14370.043*
H3C0.13680.05090.14620.043*
C40.26903 (13)−0.08070 (11)0.19725 (8)0.0293 (4)
H4A0.2967−0.04320.17150.044*
H4B0.2327−0.12980.17370.044*
H4C0.3241−0.10320.23030.044*
C50.16501 (12)0.15374 (11)0.28177 (8)0.0288 (4)
H5A0.11520.12290.29710.043*
H5B0.13110.18140.24330.043*
H5C0.19840.19860.31070.043*
C60.34687 (14)0.13018 (13)0.22957 (8)0.0340 (4)
H6A0.38060.17980.25360.051*
H6B0.30560.15120.19050.051*
H6C0.39760.08910.22350.051*
C70.48101 (10)0.11767 (9)0.39511 (6)0.0160 (3)
C80.46614 (12)0.20997 (10)0.38666 (7)0.0244 (3)
H80.39970.23220.37130.029*
C90.54855 (13)0.26859 (11)0.40074 (8)0.0287 (4)
H90.53710.32950.39480.034*
C100.64792 (12)0.23684 (11)0.42370 (7)0.0258 (3)
H100.70320.27630.43320.031*
C110.66436 (11)0.14632 (11)0.43231 (7)0.0223 (3)
H110.73100.12470.44750.027*
C120.58171 (11)0.08718 (10)0.41835 (6)0.0185 (3)
H120.59390.02640.42460.022*
C130.28202 (11)0.05273 (9)0.43088 (6)0.0159 (3)
C140.19262 (11)0.00334 (10)0.42642 (7)0.0210 (3)
H140.1719−0.03910.39560.025*
C150.13399 (12)0.01638 (11)0.46710 (7)0.0254 (3)
H150.0750−0.01740.46350.031*
C160.16361 (12)0.07993 (11)0.51311 (7)0.0252 (3)
H160.12420.08910.54020.030*
C170.25164 (12)0.12936 (11)0.51847 (7)0.0251 (3)
H170.27170.17190.54940.030*
C180.31062 (11)0.11602 (10)0.47793 (7)0.0203 (3)
H180.37000.14970.48210.024*
C190.41975 (10)−0.08517 (9)0.38053 (6)0.0151 (3)
C200.47948 (11)−0.11181 (10)0.34217 (7)0.0192 (3)
H200.4907−0.07190.31340.023*
C210.52196 (12)−0.19630 (10)0.34629 (7)0.0238 (3)
H210.5611−0.21280.32030.029*
C220.50633 (12)−0.25642 (10)0.38912 (7)0.0250 (3)
H220.5351−0.31320.39210.030*
C230.44760 (12)−0.23154 (10)0.42747 (7)0.0247 (3)
H230.4366−0.27180.45610.030*
C240.40487 (11)−0.14636 (10)0.42328 (7)0.0194 (3)
H240.3659−0.13020.44940.023*
U11U22U33U12U13U23
Ge10.01210 (7)0.01250 (7)0.01693 (7)−0.00005 (6)0.00481 (5)−0.00168 (6)
Si10.01585 (18)0.01453 (18)0.01666 (18)0.00156 (14)0.00463 (14)−0.00171 (14)
C10.0175 (6)0.0189 (7)0.0196 (7)0.0025 (5)0.0021 (5)−0.0043 (5)
C20.0260 (8)0.0266 (8)0.0293 (8)−0.0083 (7)0.0042 (7)−0.0038 (7)
C30.0249 (8)0.0306 (9)0.0245 (8)0.0037 (7)−0.0025 (6)−0.0045 (7)
C40.0281 (8)0.0279 (8)0.0297 (9)0.0060 (7)0.0044 (7)−0.0127 (7)
C50.0269 (8)0.0245 (8)0.0309 (9)0.0112 (7)0.0013 (7)−0.0060 (7)
C60.0410 (10)0.0391 (10)0.0243 (8)−0.0134 (8)0.0132 (7)−0.0001 (7)
C70.0152 (6)0.0170 (6)0.0161 (6)−0.0019 (5)0.0050 (5)−0.0015 (5)
C80.0198 (7)0.0182 (7)0.0322 (8)−0.0008 (6)0.0024 (6)−0.0008 (6)
C90.0291 (8)0.0182 (7)0.0356 (9)−0.0064 (6)0.0039 (7)−0.0003 (7)
C100.0231 (7)0.0305 (8)0.0225 (7)−0.0123 (6)0.0040 (6)−0.0018 (6)
C110.0148 (6)0.0328 (8)0.0178 (7)−0.0026 (6)0.0021 (5)0.0009 (6)
C120.0176 (7)0.0208 (7)0.0168 (6)−0.0004 (5)0.0044 (5)0.0014 (5)
C130.0151 (6)0.0158 (6)0.0167 (6)0.0016 (5)0.0044 (5)−0.0001 (5)
C140.0220 (7)0.0226 (7)0.0199 (7)−0.0051 (6)0.0082 (6)−0.0044 (6)
C150.0220 (7)0.0318 (9)0.0251 (8)−0.0066 (6)0.0108 (6)−0.0023 (6)
C160.0249 (8)0.0334 (9)0.0206 (7)0.0041 (7)0.0117 (6)−0.0005 (6)
C170.0277 (8)0.0277 (8)0.0200 (7)0.0009 (6)0.0069 (6)−0.0073 (6)
C180.0189 (7)0.0209 (7)0.0209 (7)−0.0017 (6)0.0051 (6)−0.0037 (6)
C190.0135 (6)0.0123 (6)0.0189 (6)−0.0003 (5)0.0034 (5)−0.0023 (5)
C200.0184 (7)0.0187 (7)0.0215 (7)0.0019 (5)0.0073 (5)0.0006 (6)
C210.0216 (7)0.0216 (7)0.0290 (8)0.0051 (6)0.0083 (6)−0.0045 (6)
C220.0256 (8)0.0124 (6)0.0327 (8)0.0033 (6)0.0010 (6)−0.0025 (6)
C230.0306 (8)0.0173 (7)0.0239 (8)−0.0016 (6)0.0038 (6)0.0047 (6)
C240.0201 (7)0.0183 (7)0.0201 (7)−0.0017 (6)0.0060 (5)−0.0009 (6)
Ge1—Si12.4026 (4)C9—H90.9300
Ge1—C71.9618 (14)C9—C101.384 (2)
Ge1—C131.9648 (14)C10—H100.9300
Ge1—C191.9512 (13)C10—C111.379 (2)
Si1—C11.9078 (15)C11—H110.9300
Si1—C51.8687 (15)C11—C121.393 (2)
Si1—C61.8670 (17)C12—H120.9300
C1—C21.536 (2)C13—C141.398 (2)
C1—C31.534 (2)C13—C181.400 (2)
C1—C41.537 (2)C14—H140.9300
C2—H2A0.9600C14—C151.389 (2)
C2—H2B0.9600C15—H150.9300
C2—H2C0.9600C15—C161.388 (2)
C3—H3A0.9600C16—H160.9300
C3—H3B0.9600C16—C171.379 (2)
C3—H3C0.9600C17—H170.9300
C4—H4A0.9600C17—C181.391 (2)
C4—H4B0.9600C18—H180.9300
C4—H4C0.9600C19—C201.4019 (19)
C5—H5A0.9600C19—C241.390 (2)
C5—H5B0.9600C20—H200.9300
C5—H5C0.9600C20—C211.383 (2)
C6—H6A0.9600C21—H210.9300
C6—H6B0.9600C21—C221.385 (2)
C6—H6C0.9600C22—H220.9300
C7—C81.403 (2)C22—C231.384 (2)
C7—C121.3939 (19)C23—H230.9300
C8—H80.9300C23—C241.393 (2)
C8—C91.385 (2)C24—H240.9300
C7—Ge1—Si1107.93 (4)C7—C8—H8119.4
C7—Ge1—C13107.92 (6)C9—C8—C7121.19 (15)
C13—Ge1—Si1110.34 (4)C9—C8—H8119.4
C19—Ge1—Si1113.92 (4)C8—C9—H9119.9
C19—Ge1—C7106.89 (6)C10—C9—C8120.28 (15)
C19—Ge1—C13109.61 (6)C10—C9—H9119.9
C1—Si1—Ge1114.67 (5)C9—C10—H10120.2
C5—Si1—Ge1104.47 (5)C11—C10—C9119.52 (14)
C5—Si1—C1109.35 (7)C11—C10—H10120.2
C6—Si1—Ge1109.08 (6)C10—C11—H11119.8
C6—Si1—C1110.26 (7)C10—C11—C12120.39 (14)
C6—Si1—C5108.72 (9)C12—C11—H11119.8
C2—C1—Si1111.05 (10)C7—C12—H12119.5
C2—C1—C4108.84 (13)C11—C12—C7121.06 (14)
C3—C1—Si1108.38 (10)C11—C12—H12119.5
C3—C1—C2109.00 (13)C14—C13—Ge1121.31 (10)
C3—C1—C4108.31 (13)C14—C13—C18117.60 (13)
C4—C1—Si1111.20 (10)C18—C13—Ge1121.09 (11)
C1—C2—H2A109.5C13—C14—H14119.3
C1—C2—H2B109.5C15—C14—C13121.38 (14)
C1—C2—H2C109.5C15—C14—H14119.3
H2A—C2—H2B109.5C14—C15—H15120.0
H2A—C2—H2C109.5C16—C15—C14119.93 (15)
H2B—C2—H2C109.5C16—C15—H15120.0
C1—C3—H3A109.5C15—C16—H16120.1
C1—C3—H3B109.5C17—C16—C15119.72 (14)
C1—C3—H3C109.5C17—C16—H16120.1
H3A—C3—H3B109.5C16—C17—H17119.8
H3A—C3—H3C109.5C16—C17—C18120.36 (14)
H3B—C3—H3C109.5C18—C17—H17119.8
C1—C4—H4A109.5C13—C18—H18119.5
C1—C4—H4B109.5C17—C18—C13121.01 (14)
C1—C4—H4C109.5C17—C18—H18119.5
H4A—C4—H4B109.5C20—C19—Ge1118.88 (10)
H4A—C4—H4C109.5C24—C19—Ge1123.24 (10)
H4B—C4—H4C109.5C24—C19—C20117.87 (13)
Si1—C5—H5A109.5C19—C20—H20119.3
Si1—C5—H5B109.5C21—C20—C19121.30 (14)
Si1—C5—H5C109.5C21—C20—H20119.3
H5A—C5—H5B109.5C20—C21—H21120.0
H5A—C5—H5C109.5C20—C21—C22120.06 (14)
H5B—C5—H5C109.5C22—C21—H21120.0
Si1—C6—H6A109.5C21—C22—H22120.2
Si1—C6—H6B109.5C23—C22—C21119.62 (14)
Si1—C6—H6C109.5C23—C22—H22120.2
H6A—C6—H6B109.5C22—C23—H23119.9
H6A—C6—H6C109.5C22—C23—C24120.25 (14)
H6B—C6—H6C109.5C24—C23—H23119.9
C8—C7—Ge1120.48 (11)C19—C24—C23120.90 (14)
C12—C7—Ge1121.93 (11)C19—C24—H24119.6
C12—C7—C8117.57 (13)C23—C24—H24119.6
Ge1—C7—C8—C9−178.11 (13)C13—C14—C15—C160.4 (2)
Ge1—C7—C12—C11177.92 (11)C14—C13—C18—C17−0.3 (2)
Ge1—C13—C14—C15−178.96 (12)C14—C15—C16—C17−0.5 (3)
Ge1—C13—C18—C17178.66 (12)C15—C16—C17—C180.2 (2)
Ge1—C19—C20—C21179.40 (11)C16—C17—C18—C130.2 (2)
Ge1—C19—C24—C23−179.38 (11)C18—C13—C14—C150.0 (2)
C7—C8—C9—C10−0.1 (3)C19—C20—C21—C22−0.3 (2)
C8—C7—C12—C11−0.3 (2)C20—C19—C24—C23−0.4 (2)
C8—C9—C10—C110.2 (2)C20—C21—C22—C230.3 (2)
C9—C10—C11—C12−0.3 (2)C21—C22—C23—C24−0.3 (2)
C10—C11—C12—C70.4 (2)C22—C23—C24—C190.4 (2)
C12—C7—C8—C90.2 (2)C24—C19—C20—C210.3 (2)
  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Singly bonded catenated germanes: eighty years of progress.

Authors:  Monika L Amadoruge; Charles S Weinert
Journal:  Chem Rev       Date:  2008-09-25       Impact factor: 60.622

3.  New oligogermane with a five coordinate germanium atom: the preparation of 1-germylgermatrane.

Authors:  Kirill V Zaitsev; Andrei V Churakov; Oleg Kh Poleshchuk; Yuri F Oprunenko; Galina S Zaitseva; Sergey S Karlov
Journal:  Dalton Trans       Date:  2014-05-14       Impact factor: 4.390

4.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

  4 in total

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