Literature DB >> 26870468

Crystal structure of a methimazole-based ionic liquid.

Jamie C Gaitor1, Manuel Sanchez Zayas1, Darrel J Myrthil1, Frankie White2, Jeffrey M Hendrich2, Richard E Sykora2, Richard A O'Brien2, John T Reilly1, Arsalan Mirjafari1.   

Abstract

The structure of 1-methyl-2-(prop-2-en-1-ylsulfan-yl)-1H-imidazol-3-ium bromide, C7H11N2S(+)·Br(-), has monoclinic (P21/c) symmetry. In the crystal, the components are linked by N-H⋯Br and C-H⋯Br hydrogen bonds. The crystal structure of the title compound undeniably proves that methimazole reacts through the thione tautomer, rather than the thiol tautomer in this system.

Entities:  

Keywords:  S-allyl­ation; crystal structure; ionic liquids; methimazole; nitro­gen heterocycle

Year:  2015        PMID: 26870468      PMCID: PMC4719949          DOI: 10.1107/S2056989015022136

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For the biological activity of methimazole, see: Rong et al. (2013 ▸). For its use as a ligand, see: Crossley et al. (2006 ▸). For a discussion of methimazole-based ionic liquids, see: Siriwardana et al. (2008 ▸). For reaction chemistry of methimazole, see: Roy & Mugesh (2005 ▸).

Experimental

Crystal data

C7H11N2S+·Br M = 235.15 Monoclinic, a = 10.8692 (7) Å b = 7.4103 (5) Å c = 12.8551 (9) Å β = 104.006 (7)° V = 1004.62 (11) Å3 Z = 4 Mo Kα radiation μ = 4.24 mm−1 T = 180 K 0.6 × 0.32 × 0.25 mm

Data collection

Agilent Xcalibur, Eos diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2014 ▸) T min = 0.321, T max = 1.000 7388 measured reflections 1829 independent reflections 1558 reflections with I > 2σ(I) R int = 0.042

Refinement

R[F 2 > 2σ(F 2)] = 0.030 wR(F 2) = 0.065 S = 1.03 1829 reflections 105 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.34 e Å−3 Δρmin = −0.38 e Å−3

Data collection: CrysAlis PRO (Agilent, 2014 ▸); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▸); molecular graphics: OLEX2 (Dolomanov et al., 2009 ▸); software used to prepare material for publication: OLEX2 and publCIF (Westrip, 2010 ▸). Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S2056989015022136/hg5463sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015022136/hg5463Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015022136/hg5463Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015022136/hg5463fig1.tif A thermal ellipsoid diagram of the structure of the title compound. Click here for additional data file. . DOI: 10.1107/S2056989015022136/hg5463fig2.tif Reaction scheme. CCDC reference: 1437865 Additional supporting information: crystallographic information; 3D view; checkCIF report
C7H11N2S+·BrF(000) = 472
Mr = 235.15Dx = 1.555 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 10.8692 (7) ÅCell parameters from 2203 reflections
b = 7.4103 (5) Åθ = 3.9–27.0°
c = 12.8551 (9) ŵ = 4.24 mm1
β = 104.006 (7)°T = 180 K
V = 1004.62 (11) Å3Prism, colourless
Z = 40.6 × 0.32 × 0.25 mm
Agilent Xcalibur, Eos diffractometer1829 independent reflections
Radiation source: Enhance (Mo) X-ray Source1558 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.042
Detector resolution: 16.0514 pixels mm-1θmax = 25.3°, θmin = 3.2°
ω scansh = −13→13
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2014)k = −8→8
Tmin = 0.321, Tmax = 1.000l = −15→15
7388 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.030Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.065H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.027P)2] where P = (Fo2 + 2Fc2)/3
1829 reflections(Δ/σ)max = 0.001
105 parametersΔρmax = 0.34 e Å3
1 restraintΔρmin = −0.38 e Å3
Experimental. CrysAlis Pro (Agilent, 2014) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.70880 (3)0.66161 (4)0.53045 (2)0.02621 (12)
N20.6562 (2)0.0414 (3)0.2392 (2)0.0273 (6)
N10.6302 (2)0.1226 (3)0.39296 (18)0.0233 (6)
C20.5297 (3)0.0739 (4)0.2258 (3)0.0316 (8)
H2A0.46690.06230.16250.038*
C30.5134 (3)0.1262 (4)0.3221 (3)0.0285 (7)
H30.43710.15870.33760.034*
C10.7171 (3)0.0704 (4)0.3410 (2)0.0234 (7)
S10.87834 (8)0.04183 (11)0.39532 (7)0.0373 (2)
C40.6547 (4)0.1637 (4)0.5076 (2)0.0370 (9)
H4A0.57560.17490.52780.055*
H4B0.70090.27500.52210.055*
H4C0.70370.06810.54810.055*
C60.9092 (3)0.3747 (4)0.3027 (3)0.0410 (9)
H60.94500.32740.24980.049*
C50.9322 (3)0.2790 (4)0.4066 (3)0.0405 (9)
H5A0.88890.34290.45320.049*
H5B1.02230.28180.44010.049*
C70.8417 (3)0.5215 (5)0.2809 (3)0.0436 (9)
H7A0.80470.57190.33230.052*
H7B0.83050.57580.21410.052*
H20.689 (3)0.007 (4)0.190 (2)0.049 (11)*
U11U22U33U12U13U23
Br10.02573 (18)0.0284 (2)0.02529 (19)−0.00350 (13)0.00772 (13)−0.00185 (13)
N20.0309 (15)0.0295 (16)0.0227 (15)0.0016 (12)0.0088 (13)−0.0005 (12)
N10.0304 (15)0.0165 (13)0.0238 (14)−0.0003 (11)0.0081 (12)0.0002 (10)
C20.0256 (17)0.030 (2)0.0354 (19)−0.0008 (14)−0.0003 (15)0.0026 (15)
C30.0190 (16)0.0255 (18)0.041 (2)0.0028 (13)0.0064 (14)0.0023 (15)
C10.0253 (17)0.0180 (17)0.0264 (17)−0.0015 (13)0.0057 (14)0.0027 (13)
S10.0229 (4)0.0335 (5)0.0518 (6)0.0031 (4)0.0019 (4)0.0112 (4)
C40.059 (2)0.028 (2)0.0254 (18)−0.0016 (16)0.0128 (17)−0.0035 (14)
C60.039 (2)0.045 (2)0.044 (2)−0.0026 (17)0.0186 (18)0.0108 (18)
C50.0249 (18)0.040 (2)0.051 (2)−0.0105 (15)−0.0023 (16)0.0134 (17)
C70.049 (2)0.042 (2)0.037 (2)0.0000 (18)0.0056 (18)0.0126 (17)
N2—C21.366 (4)C4—H4A0.9600
N2—C11.334 (4)C4—H4B0.9600
N2—H20.836 (17)C4—H4C0.9600
N1—C31.373 (4)C6—H60.9300
N1—C11.338 (3)C6—C51.480 (4)
N1—C41.465 (4)C6—C71.304 (4)
C2—H2A0.9300C5—H5A0.9700
C2—C31.349 (4)C5—H5B0.9700
C3—H30.9300C7—H7A0.9300
C1—S11.736 (3)C7—H7B0.9300
S1—C51.847 (3)
C2—N2—H2124 (2)N1—C4—H4B109.5
C1—N2—C2109.9 (3)N1—C4—H4C109.5
C1—N2—H2126 (2)H4A—C4—H4B109.5
C3—N1—C4125.3 (3)H4A—C4—H4C109.5
C1—N1—C3109.0 (2)H4B—C4—H4C109.5
C1—N1—C4125.7 (3)C5—C6—H6118.1
N2—C2—H2A126.7C7—C6—H6118.1
C3—C2—N2106.7 (3)C7—C6—C5123.8 (3)
C3—C2—H2A126.7S1—C5—H5A108.8
N1—C3—H3126.3S1—C5—H5B108.8
C2—C3—N1107.3 (3)C6—C5—S1113.8 (2)
C2—C3—H3126.3C6—C5—H5A108.8
N2—C1—N1107.1 (3)C6—C5—H5B108.8
N2—C1—S1126.0 (2)H5A—C5—H5B107.7
N1—C1—S1126.9 (2)C6—C7—H7A120.0
C1—S1—C5100.68 (14)C6—C7—H7B120.0
N1—C4—H4A109.5H7A—C7—H7B120.0
N2—C2—C3—N1−0.7 (3)C1—N2—C2—C30.7 (4)
N2—C1—S1—C5104.2 (3)C1—N1—C3—C20.5 (3)
N1—C1—S1—C5−77.0 (3)C1—S1—C5—C6−61.4 (3)
C2—N2—C1—N1−0.4 (3)C4—N1—C3—C2−177.7 (3)
C2—N2—C1—S1178.7 (2)C4—N1—C1—N2178.1 (3)
C3—N1—C1—N2−0.1 (3)C4—N1—C1—S1−0.9 (4)
C3—N1—C1—S1−179.1 (2)C7—C6—C5—S1121.8 (3)
D—H···AD—HH···AD···AD—H···A
N2—H2···Br1i0.84 (3)2.46 (3)3.246 (2)158 (3)
C2—H2A···Br1ii0.932.843.723 (4)159
C3—H3···Br1iii0.932.913.757 (3)152
C4—H4B···Br10.962.873.737 (3)151
C5—H5B···Br1iv0.972.893.814 (3)161
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H2⋯Br1i 0.84 (3)2.46 (3)3.246 (2)158 (3)
C2—H2A⋯Br1ii 0.932.843.723 (4)159
C3—H3⋯Br1iii 0.932.913.757 (3)152
C4—H4B⋯Br10.962.873.737 (3)151
C5—H5B⋯Br1iv 0.972.893.814 (3)161

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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1.  A short history of SHELX.

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