| Literature DB >> 26870466 |
Joel T Mague1, Shaaban K Mohamed2, Mehmet Akkurt3, Sabry H H Younes4, Mustafa R Albayati5.
Abstract
In the title compound, C16H12N2O3, the 2H-chromene moiety is essentially planar, with an r.m.s. deviation of the nine constituent atoms from the mean plane of 0.0093 Å, and makes a dihedral angle of 76.84 (3)° with the pendant phenyl ring. An intra-molecular N-H⋯O hydrogen bond helps to determine the conformation of the side chain. In the crystal, N-H⋯O and N-H⋯N hydrogen bonds link the mol-ecules, forming [100] chains.Entities:
Keywords: bio-activity; coumarin scaffold compounds; coumarins; crystal structure
Year: 2015 PMID: 26870466 PMCID: PMC4719947 DOI: 10.1107/S2056989015022495
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
| C16H12N2O3 | |
| Triclinic, | |
| Cu | |
| Cell parameters from 3784 reflections | |
| θ = 3.9–72.2° | |
| α = 96.504 (2)° | µ = 0.85 mm−1 |
| β = 95.614 (2)° | |
| γ = 94.757 (2)° | Tablet, colourless |
| 0.19 × 0.13 × 0.05 mm |
| Bruker D8 VENTURE PHOTON 100 CMOS diffractometer | 2371 independent reflections |
| Radiation source: INCOATEC IµS micro–focus source | 2121 reflections with |
| Mirror monochromator | |
| Detector resolution: 10.4167 pixels mm-1 | θmax = 72.3°, θmin = 3.9° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 4865 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: mixed |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 2371 reflections | Δρmax = 0.22 e Å−3 |
| 199 parameters | Δρmin = −0.21 e Å−3 |
| 0 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0129 (16) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 1.05849 (13) | 0.30993 (11) | 0.29083 (7) | 0.0271 (2) | |
| O2 | 0.92419 (13) | 0.42696 (12) | 0.14651 (7) | 0.0299 (2) | |
| O3 | 0.43044 (13) | 0.53972 (11) | 0.33020 (7) | 0.0292 (2) | |
| N1 | 0.52900 (16) | 0.50161 (13) | 0.14932 (9) | 0.0256 (3) | |
| N2 | 0.35679 (16) | 0.56386 (13) | 0.09797 (9) | 0.0245 (3) | |
| C1 | 0.73626 (18) | 0.41687 (14) | 0.31115 (10) | 0.0220 (3) | |
| C2 | 0.74197 (18) | 0.37498 (14) | 0.42062 (10) | 0.0233 (3) | |
| H2 | 0.6338 | 0.3978 | 0.4656 | 0.028* | |
| C3 | 0.90772 (18) | 0.29704 (14) | 0.46963 (10) | 0.0240 (3) | |
| C4 | 0.9195 (2) | 0.24825 (16) | 0.58159 (11) | 0.0275 (3) | |
| H4 | 0.8142 | 0.2670 | 0.6296 | 0.033* | |
| C5 | 1.0850 (2) | 0.17297 (16) | 0.62133 (11) | 0.0300 (3) | |
| H5 | 1.0926 | 0.1391 | 0.6967 | 0.036* | |
| C6 | 1.2410 (2) | 0.14627 (16) | 0.55202 (11) | 0.0305 (3) | |
| H6 | 1.3550 | 0.0960 | 0.5812 | 0.037* | |
| C7 | 1.2321 (2) | 0.19208 (16) | 0.44109 (11) | 0.0295 (3) | |
| H7 | 1.3377 | 0.1730 | 0.3934 | 0.035* | |
| C8 | 1.06438 (19) | 0.26654 (15) | 0.40167 (10) | 0.0243 (3) | |
| C9 | 0.90475 (18) | 0.38814 (15) | 0.24263 (10) | 0.0236 (3) | |
| C10 | 0.55367 (18) | 0.49380 (14) | 0.26524 (10) | 0.0229 (3) | |
| C11 | 0.35631 (19) | 0.73381 (15) | 0.11707 (9) | 0.0246 (3) | |
| C12 | 0.5353 (2) | 0.83552 (17) | 0.13527 (11) | 0.0324 (3) | |
| H12 | 0.6626 | 0.7916 | 0.1390 | 0.039* | |
| C13 | 0.5280 (2) | 1.00138 (18) | 0.14802 (13) | 0.0401 (4) | |
| H13 | 0.6509 | 1.0703 | 0.1608 | 0.048* | |
| C14 | 0.3449 (2) | 1.06733 (18) | 0.14238 (12) | 0.0390 (4) | |
| H14 | 0.3410 | 1.1810 | 0.1518 | 0.047* | |
| C15 | 0.1668 (2) | 0.96594 (18) | 0.12283 (12) | 0.0367 (3) | |
| H15 | 0.0400 | 1.0106 | 0.1185 | 0.044* | |
| C16 | 0.1711 (2) | 0.80054 (16) | 0.10956 (11) | 0.0300 (3) | |
| H16 | 0.0478 | 0.7323 | 0.0953 | 0.036* | |
| H2N | 0.242 (3) | 0.5112 (19) | 0.1179 (14) | 0.033 (4)* | |
| H1N | 0.621 (3) | 0.472 (2) | 0.1014 (16) | 0.043 (5)* |
| O1 | 0.0260 (5) | 0.0348 (5) | 0.0226 (4) | 0.0082 (4) | 0.0054 (3) | 0.0060 (4) |
| O2 | 0.0274 (5) | 0.0422 (6) | 0.0222 (4) | 0.0063 (4) | 0.0070 (3) | 0.0075 (4) |
| O3 | 0.0284 (5) | 0.0393 (5) | 0.0221 (4) | 0.0101 (4) | 0.0069 (4) | 0.0040 (4) |
| N1 | 0.0259 (5) | 0.0337 (6) | 0.0194 (5) | 0.0111 (4) | 0.0041 (4) | 0.0048 (4) |
| N2 | 0.0230 (5) | 0.0297 (6) | 0.0218 (5) | 0.0067 (4) | 0.0027 (4) | 0.0048 (4) |
| C1 | 0.0234 (6) | 0.0217 (6) | 0.0207 (6) | 0.0020 (4) | 0.0035 (5) | 0.0012 (4) |
| C2 | 0.0247 (6) | 0.0240 (6) | 0.0210 (6) | 0.0021 (4) | 0.0037 (5) | 0.0012 (4) |
| C3 | 0.0264 (6) | 0.0227 (6) | 0.0222 (6) | 0.0016 (5) | 0.0014 (5) | 0.0014 (5) |
| C4 | 0.0308 (7) | 0.0289 (7) | 0.0232 (6) | 0.0030 (5) | 0.0036 (5) | 0.0043 (5) |
| C5 | 0.0358 (7) | 0.0296 (7) | 0.0243 (6) | 0.0027 (5) | −0.0012 (5) | 0.0065 (5) |
| C6 | 0.0301 (7) | 0.0295 (7) | 0.0317 (7) | 0.0061 (5) | −0.0029 (5) | 0.0056 (5) |
| C7 | 0.0274 (7) | 0.0318 (7) | 0.0299 (6) | 0.0068 (5) | 0.0031 (5) | 0.0030 (5) |
| C8 | 0.0274 (6) | 0.0240 (6) | 0.0211 (6) | 0.0015 (5) | 0.0011 (5) | 0.0029 (4) |
| C9 | 0.0244 (6) | 0.0246 (6) | 0.0215 (6) | 0.0022 (4) | 0.0020 (5) | 0.0020 (4) |
| C10 | 0.0250 (6) | 0.0239 (6) | 0.0200 (6) | 0.0026 (4) | 0.0043 (5) | 0.0022 (4) |
| C11 | 0.0297 (6) | 0.0299 (7) | 0.0156 (5) | 0.0065 (5) | 0.0048 (4) | 0.0038 (4) |
| C12 | 0.0299 (7) | 0.0364 (8) | 0.0307 (7) | 0.0051 (5) | 0.0025 (5) | 0.0025 (5) |
| C13 | 0.0423 (8) | 0.0360 (8) | 0.0409 (8) | −0.0017 (6) | 0.0064 (6) | 0.0015 (6) |
| C14 | 0.0562 (9) | 0.0290 (7) | 0.0345 (7) | 0.0098 (6) | 0.0128 (7) | 0.0044 (5) |
| C15 | 0.0423 (8) | 0.0398 (8) | 0.0325 (7) | 0.0181 (6) | 0.0097 (6) | 0.0079 (6) |
| C16 | 0.0292 (7) | 0.0354 (7) | 0.0272 (6) | 0.0086 (5) | 0.0051 (5) | 0.0054 (5) |
| O1—C9 | 1.3687 (14) | C5—C6 | 1.3921 (19) |
| O1—C8 | 1.3774 (14) | C5—H5 | 0.9500 |
| O2—C9 | 1.2158 (15) | C6—C7 | 1.3854 (18) |
| O3—C10 | 1.2245 (15) | C6—H6 | 0.9500 |
| N1—C10 | 1.3528 (15) | C7—C8 | 1.3874 (18) |
| N1—N2 | 1.4064 (14) | C7—H7 | 0.9500 |
| N1—H1N | 0.896 (18) | C11—C12 | 1.3899 (19) |
| N2—C11 | 1.4184 (16) | C11—C16 | 1.3939 (17) |
| N2—H2N | 0.911 (17) | C12—C13 | 1.388 (2) |
| C1—C2 | 1.3573 (16) | C12—H12 | 0.9500 |
| C1—C9 | 1.4581 (17) | C13—C14 | 1.378 (2) |
| C1—C10 | 1.5027 (16) | C13—H13 | 0.9500 |
| C2—C3 | 1.4315 (17) | C14—C15 | 1.384 (2) |
| C2—H2 | 0.9500 | C14—H14 | 0.9500 |
| C3—C8 | 1.3915 (18) | C15—C16 | 1.382 (2) |
| C3—C4 | 1.4064 (17) | C15—H15 | 0.9500 |
| C4—C5 | 1.3809 (18) | C16—H16 | 0.9500 |
| C4—H4 | 0.9500 | ||
| C9—O1—C8 | 122.88 (10) | O1—C8—C7 | 116.96 (11) |
| C10—N1—N2 | 120.49 (10) | O1—C8—C3 | 120.67 (11) |
| C10—N1—H1N | 123.5 (11) | C7—C8—C3 | 122.37 (11) |
| N2—N1—H1N | 116.0 (11) | O2—C9—O1 | 115.97 (10) |
| N1—N2—C11 | 115.52 (10) | O2—C9—C1 | 126.82 (11) |
| N1—N2—H2N | 109.7 (10) | O1—C9—C1 | 117.20 (10) |
| C11—N2—H2N | 112.6 (10) | O3—C10—N1 | 122.64 (11) |
| C2—C1—C9 | 119.98 (11) | O3—C10—C1 | 120.63 (11) |
| C2—C1—C10 | 117.83 (11) | N1—C10—C1 | 116.64 (10) |
| C9—C1—C10 | 122.18 (10) | C12—C11—C16 | 119.18 (12) |
| C1—C2—C3 | 121.33 (11) | C12—C11—N2 | 121.77 (11) |
| C1—C2—H2 | 119.3 | C16—C11—N2 | 118.90 (12) |
| C3—C2—H2 | 119.3 | C13—C12—C11 | 119.95 (13) |
| C8—C3—C4 | 118.47 (11) | C13—C12—H12 | 120.0 |
| C8—C3—C2 | 117.82 (11) | C11—C12—H12 | 120.0 |
| C4—C3—C2 | 123.71 (11) | C14—C13—C12 | 120.85 (14) |
| C5—C4—C3 | 119.62 (12) | C14—C13—H13 | 119.6 |
| C5—C4—H4 | 120.2 | C12—C13—H13 | 119.6 |
| C3—C4—H4 | 120.2 | C13—C14—C15 | 119.14 (13) |
| C4—C5—C6 | 120.62 (12) | C13—C14—H14 | 120.4 |
| C4—C5—H5 | 119.7 | C15—C14—H14 | 120.4 |
| C6—C5—H5 | 119.7 | C16—C15—C14 | 120.81 (13) |
| C7—C6—C5 | 120.82 (12) | C16—C15—H15 | 119.6 |
| C7—C6—H6 | 119.6 | C14—C15—H15 | 119.6 |
| C5—C6—H6 | 119.6 | C15—C16—C11 | 120.04 (13) |
| C6—C7—C8 | 118.10 (12) | C15—C16—H16 | 120.0 |
| C6—C7—H7 | 121.0 | C11—C16—H16 | 120.0 |
| C8—C7—H7 | 121.0 | ||
| C10—N1—N2—C11 | 74.99 (14) | C2—C1—C9—O2 | −175.93 (12) |
| C9—C1—C2—C3 | −2.32 (18) | C10—C1—C9—O2 | 3.5 (2) |
| C10—C1—C2—C3 | 178.22 (10) | C2—C1—C9—O1 | 3.79 (17) |
| C1—C2—C3—C8 | 0.51 (18) | C10—C1—C9—O1 | −176.78 (10) |
| C1—C2—C3—C4 | −178.72 (11) | N2—N1—C10—O3 | −0.14 (19) |
| C8—C3—C4—C5 | 0.41 (19) | N2—N1—C10—C1 | 176.63 (10) |
| C2—C3—C4—C5 | 179.64 (12) | C2—C1—C10—O3 | 11.13 (18) |
| C3—C4—C5—C6 | 0.6 (2) | C9—C1—C10—O3 | −168.32 (11) |
| C4—C5—C6—C7 | −1.1 (2) | C2—C1—C10—N1 | −165.71 (11) |
| C5—C6—C7—C8 | 0.6 (2) | C9—C1—C10—N1 | 14.85 (17) |
| C9—O1—C8—C7 | −178.13 (11) | N1—N2—C11—C12 | 28.34 (15) |
| C9—O1—C8—C3 | 1.88 (18) | N1—N2—C11—C16 | −156.03 (11) |
| C6—C7—C8—O1 | −179.58 (11) | C16—C11—C12—C13 | 1.27 (19) |
| C6—C7—C8—C3 | 0.4 (2) | N2—C11—C12—C13 | 176.89 (11) |
| C4—C3—C8—O1 | 179.08 (11) | C11—C12—C13—C14 | −0.3 (2) |
| C2—C3—C8—O1 | −0.19 (18) | C12—C13—C14—C15 | −0.5 (2) |
| C4—C3—C8—C7 | −0.91 (19) | C13—C14—C15—C16 | 0.3 (2) |
| C2—C3—C8—C7 | 179.82 (11) | C14—C15—C16—C11 | 0.7 (2) |
| C8—O1—C9—O2 | 176.16 (10) | C12—C11—C16—C15 | −1.48 (18) |
| C8—O1—C9—C1 | −3.59 (17) | N2—C11—C16—C15 | −177.22 (11) |
| H··· | ||||
| N1—H1 | 0.896 (18) | 2.327 (18) | 3.0498 (14) | 137.7 (15) |
| N1—H1 | 0.896 (18) | 2.112 (18) | 2.7544 (13) | 127.8 (15) |
| N2—H2 | 0.911 (17) | 2.243 (17) | 3.1358 (14) | 166.3 (14) |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1 | 0.896 (18) | 2.327 (18) | 3.0498 (14) | 137.7 (15) |
| N1—H1 | 0.896 (18) | 2.112 (18) | 2.7544 (13) | 127.8 (15) |
| N2—H2 | 0.911 (17) | 2.243 (17) | 3.1358 (14) | 166.3 (14) |
Symmetry codes: (i) ; (ii) .