Literature DB >> 26870466

Crystal structure of 2-oxo-N'-phenyl-2H-chromene-3-carbohydrazide.

Joel T Mague1, Shaaban K Mohamed2, Mehmet Akkurt3, Sabry H H Younes4, Mustafa R Albayati5.   

Abstract

In the title compound, C16H12N2O3, the 2H-chromene moiety is essentially planar, with an r.m.s. deviation of the nine constituent atoms from the mean plane of 0.0093 Å, and makes a dihedral angle of 76.84 (3)° with the pendant phenyl ring. An intra-molecular N-H⋯O hydrogen bond helps to determine the conformation of the side chain. In the crystal, N-H⋯O and N-H⋯N hydrogen bonds link the mol-ecules, forming [100] chains.

Entities:  

Keywords:  bio-activity; coumarin scaffold compounds; coumarins; crystal structure

Year:  2015        PMID: 26870466      PMCID: PMC4719947          DOI: 10.1107/S2056989015022495

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For synthesis and bio-activity of coumarin scaffold compounds, see: Shivashankar et al. (2008a ▸,b ▸, 2009 ▸); Bansal et al. (2013 ▸); Jacquot et al. (2007 ▸); Bhavsar et al. (2011 ▸).

Experimental

Crystal data

C16H12N2O3 M = 280.28 Triclinic, a = 6.6508 (2) Å b = 8.3906 (3) Å c = 11.6388 (4) Å α = 96.504 (2)° β = 95.614 (2)° γ = 94.757 (2)° V = 639.31 (4) Å3 Z = 2 Cu Kα radiation μ = 0.85 mm−1 T = 150 K 0.19 × 0.13 × 0.05 mm

Data collection

Bruker D8 VENTURE PHOTON 100 CMOS diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2015 ▸) T min = 0.88, T max = 0.96 4865 measured reflections 2371 independent reflections 2121 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.107 S = 1.06 2371 reflections 199 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.22 e Å−3 Δρmin = −0.21 e Å−3

Data collection: APEX2 (Bruker, 2015 ▸); cell refinement: SAINT (Bruker, 2015 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXT (Sheldrick, 2015a ▸); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015b ▸); molecular graphics: DIAMOND (Brandenburg & Putz, 2012 ▸); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▸). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989015022495/ff2144sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015022495/ff2144Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015022495/ff2144Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015022495/ff2144fig1.tif The title mol­ecule with labeling scheme and 50% probability ellipsoids. The intra­molecular N—H⋯O hydrogen bond is shown by a dotted line. Click here for additional data file. . DOI: 10.1107/S2056989015022495/ff2144fig2.tif Packing viewed towards (110) with inter­molecular N—H⋯O and N—H⋯N hydrogen bonds shown, respectively, as blue and purple dotted lines. CCDC reference: 1438684 Additional supporting information: crystallographic information; 3D view; checkCIF report
C16H12N2O3Z = 2
Mr = 280.28F(000) = 292
Triclinic, P1Dx = 1.456 Mg m3
a = 6.6508 (2) ÅCu Kα radiation, λ = 1.54178 Å
b = 8.3906 (3) ÅCell parameters from 3784 reflections
c = 11.6388 (4) Åθ = 3.9–72.2°
α = 96.504 (2)°µ = 0.85 mm1
β = 95.614 (2)°T = 150 K
γ = 94.757 (2)°Tablet, colourless
V = 639.31 (4) Å30.19 × 0.13 × 0.05 mm
Bruker D8 VENTURE PHOTON 100 CMOS diffractometer2371 independent reflections
Radiation source: INCOATEC IµS micro–focus source2121 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.023
Detector resolution: 10.4167 pixels mm-1θmax = 72.3°, θmin = 3.9°
ω scansh = −7→7
Absorption correction: multi-scan (SADABS; Bruker, 2015)k = −9→10
Tmin = 0.88, Tmax = 0.96l = −14→14
4865 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.037H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.107w = 1/[σ2(Fo2) + (0.0632P)2 + 0.1234P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
2371 reflectionsΔρmax = 0.22 e Å3
199 parametersΔρmin = −0.21 e Å3
0 restraintsExtinction correction: SHELXL2014 (Sheldrick 2015b), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0129 (16)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. H-atoms attached to carbon were placed in calculated positions (C—H = 0.95 Å) and included as riding contributions with isotropic displacement parameters 1.2 − 1.5 times those of the attached atoms.
xyzUiso*/Ueq
O11.05849 (13)0.30993 (11)0.29083 (7)0.0271 (2)
O20.92419 (13)0.42696 (12)0.14651 (7)0.0299 (2)
O30.43044 (13)0.53972 (11)0.33020 (7)0.0292 (2)
N10.52900 (16)0.50161 (13)0.14932 (9)0.0256 (3)
N20.35679 (16)0.56386 (13)0.09797 (9)0.0245 (3)
C10.73626 (18)0.41687 (14)0.31115 (10)0.0220 (3)
C20.74197 (18)0.37498 (14)0.42062 (10)0.0233 (3)
H20.63380.39780.46560.028*
C30.90772 (18)0.29704 (14)0.46963 (10)0.0240 (3)
C40.9195 (2)0.24825 (16)0.58159 (11)0.0275 (3)
H40.81420.26700.62960.033*
C51.0850 (2)0.17297 (16)0.62133 (11)0.0300 (3)
H51.09260.13910.69670.036*
C61.2410 (2)0.14627 (16)0.55202 (11)0.0305 (3)
H61.35500.09600.58120.037*
C71.2321 (2)0.19208 (16)0.44109 (11)0.0295 (3)
H71.33770.17300.39340.035*
C81.06438 (19)0.26654 (15)0.40167 (10)0.0243 (3)
C90.90475 (18)0.38814 (15)0.24263 (10)0.0236 (3)
C100.55367 (18)0.49380 (14)0.26524 (10)0.0229 (3)
C110.35631 (19)0.73381 (15)0.11707 (9)0.0246 (3)
C120.5353 (2)0.83552 (17)0.13527 (11)0.0324 (3)
H120.66260.79160.13900.039*
C130.5280 (2)1.00138 (18)0.14802 (13)0.0401 (4)
H130.65091.07030.16080.048*
C140.3449 (2)1.06733 (18)0.14238 (12)0.0390 (4)
H140.34101.18100.15180.047*
C150.1668 (2)0.96594 (18)0.12283 (12)0.0367 (3)
H150.04001.01060.11850.044*
C160.1711 (2)0.80054 (16)0.10956 (11)0.0300 (3)
H160.04780.73230.09530.036*
H2N0.242 (3)0.5112 (19)0.1179 (14)0.033 (4)*
H1N0.621 (3)0.472 (2)0.1014 (16)0.043 (5)*
U11U22U33U12U13U23
O10.0260 (5)0.0348 (5)0.0226 (4)0.0082 (4)0.0054 (3)0.0060 (4)
O20.0274 (5)0.0422 (6)0.0222 (4)0.0063 (4)0.0070 (3)0.0075 (4)
O30.0284 (5)0.0393 (5)0.0221 (4)0.0101 (4)0.0069 (4)0.0040 (4)
N10.0259 (5)0.0337 (6)0.0194 (5)0.0111 (4)0.0041 (4)0.0048 (4)
N20.0230 (5)0.0297 (6)0.0218 (5)0.0067 (4)0.0027 (4)0.0048 (4)
C10.0234 (6)0.0217 (6)0.0207 (6)0.0020 (4)0.0035 (5)0.0012 (4)
C20.0247 (6)0.0240 (6)0.0210 (6)0.0021 (4)0.0037 (5)0.0012 (4)
C30.0264 (6)0.0227 (6)0.0222 (6)0.0016 (5)0.0014 (5)0.0014 (5)
C40.0308 (7)0.0289 (7)0.0232 (6)0.0030 (5)0.0036 (5)0.0043 (5)
C50.0358 (7)0.0296 (7)0.0243 (6)0.0027 (5)−0.0012 (5)0.0065 (5)
C60.0301 (7)0.0295 (7)0.0317 (7)0.0061 (5)−0.0029 (5)0.0056 (5)
C70.0274 (7)0.0318 (7)0.0299 (6)0.0068 (5)0.0031 (5)0.0030 (5)
C80.0274 (6)0.0240 (6)0.0211 (6)0.0015 (5)0.0011 (5)0.0029 (4)
C90.0244 (6)0.0246 (6)0.0215 (6)0.0022 (4)0.0020 (5)0.0020 (4)
C100.0250 (6)0.0239 (6)0.0200 (6)0.0026 (4)0.0043 (5)0.0022 (4)
C110.0297 (6)0.0299 (7)0.0156 (5)0.0065 (5)0.0048 (4)0.0038 (4)
C120.0299 (7)0.0364 (8)0.0307 (7)0.0051 (5)0.0025 (5)0.0025 (5)
C130.0423 (8)0.0360 (8)0.0409 (8)−0.0017 (6)0.0064 (6)0.0015 (6)
C140.0562 (9)0.0290 (7)0.0345 (7)0.0098 (6)0.0128 (7)0.0044 (5)
C150.0423 (8)0.0398 (8)0.0325 (7)0.0181 (6)0.0097 (6)0.0079 (6)
C160.0292 (7)0.0354 (7)0.0272 (6)0.0086 (5)0.0051 (5)0.0054 (5)
O1—C91.3687 (14)C5—C61.3921 (19)
O1—C81.3774 (14)C5—H50.9500
O2—C91.2158 (15)C6—C71.3854 (18)
O3—C101.2245 (15)C6—H60.9500
N1—C101.3528 (15)C7—C81.3874 (18)
N1—N21.4064 (14)C7—H70.9500
N1—H1N0.896 (18)C11—C121.3899 (19)
N2—C111.4184 (16)C11—C161.3939 (17)
N2—H2N0.911 (17)C12—C131.388 (2)
C1—C21.3573 (16)C12—H120.9500
C1—C91.4581 (17)C13—C141.378 (2)
C1—C101.5027 (16)C13—H130.9500
C2—C31.4315 (17)C14—C151.384 (2)
C2—H20.9500C14—H140.9500
C3—C81.3915 (18)C15—C161.382 (2)
C3—C41.4064 (17)C15—H150.9500
C4—C51.3809 (18)C16—H160.9500
C4—H40.9500
C9—O1—C8122.88 (10)O1—C8—C7116.96 (11)
C10—N1—N2120.49 (10)O1—C8—C3120.67 (11)
C10—N1—H1N123.5 (11)C7—C8—C3122.37 (11)
N2—N1—H1N116.0 (11)O2—C9—O1115.97 (10)
N1—N2—C11115.52 (10)O2—C9—C1126.82 (11)
N1—N2—H2N109.7 (10)O1—C9—C1117.20 (10)
C11—N2—H2N112.6 (10)O3—C10—N1122.64 (11)
C2—C1—C9119.98 (11)O3—C10—C1120.63 (11)
C2—C1—C10117.83 (11)N1—C10—C1116.64 (10)
C9—C1—C10122.18 (10)C12—C11—C16119.18 (12)
C1—C2—C3121.33 (11)C12—C11—N2121.77 (11)
C1—C2—H2119.3C16—C11—N2118.90 (12)
C3—C2—H2119.3C13—C12—C11119.95 (13)
C8—C3—C4118.47 (11)C13—C12—H12120.0
C8—C3—C2117.82 (11)C11—C12—H12120.0
C4—C3—C2123.71 (11)C14—C13—C12120.85 (14)
C5—C4—C3119.62 (12)C14—C13—H13119.6
C5—C4—H4120.2C12—C13—H13119.6
C3—C4—H4120.2C13—C14—C15119.14 (13)
C4—C5—C6120.62 (12)C13—C14—H14120.4
C4—C5—H5119.7C15—C14—H14120.4
C6—C5—H5119.7C16—C15—C14120.81 (13)
C7—C6—C5120.82 (12)C16—C15—H15119.6
C7—C6—H6119.6C14—C15—H15119.6
C5—C6—H6119.6C15—C16—C11120.04 (13)
C6—C7—C8118.10 (12)C15—C16—H16120.0
C6—C7—H7121.0C11—C16—H16120.0
C8—C7—H7121.0
C10—N1—N2—C1174.99 (14)C2—C1—C9—O2−175.93 (12)
C9—C1—C2—C3−2.32 (18)C10—C1—C9—O23.5 (2)
C10—C1—C2—C3178.22 (10)C2—C1—C9—O13.79 (17)
C1—C2—C3—C80.51 (18)C10—C1—C9—O1−176.78 (10)
C1—C2—C3—C4−178.72 (11)N2—N1—C10—O3−0.14 (19)
C8—C3—C4—C50.41 (19)N2—N1—C10—C1176.63 (10)
C2—C3—C4—C5179.64 (12)C2—C1—C10—O311.13 (18)
C3—C4—C5—C60.6 (2)C9—C1—C10—O3−168.32 (11)
C4—C5—C6—C7−1.1 (2)C2—C1—C10—N1−165.71 (11)
C5—C6—C7—C80.6 (2)C9—C1—C10—N114.85 (17)
C9—O1—C8—C7−178.13 (11)N1—N2—C11—C1228.34 (15)
C9—O1—C8—C31.88 (18)N1—N2—C11—C16−156.03 (11)
C6—C7—C8—O1−179.58 (11)C16—C11—C12—C131.27 (19)
C6—C7—C8—C30.4 (2)N2—C11—C12—C13176.89 (11)
C4—C3—C8—O1179.08 (11)C11—C12—C13—C14−0.3 (2)
C2—C3—C8—O1−0.19 (18)C12—C13—C14—C15−0.5 (2)
C4—C3—C8—C7−0.91 (19)C13—C14—C15—C160.3 (2)
C2—C3—C8—C7179.82 (11)C14—C15—C16—C110.7 (2)
C8—O1—C9—O2176.16 (10)C12—C11—C16—C15−1.48 (18)
C8—O1—C9—C1−3.59 (17)N2—C11—C16—C15−177.22 (11)
D—H···AD—HH···AD···AD—H···A
N1—H1N···N2i0.896 (18)2.327 (18)3.0498 (14)137.7 (15)
N1—H1N···O20.896 (18)2.112 (18)2.7544 (13)127.8 (15)
N2—H2N···O2ii0.911 (17)2.243 (17)3.1358 (14)166.3 (14)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1N⋯N2i 0.896 (18)2.327 (18)3.0498 (14)137.7 (15)
N1—H1N⋯O20.896 (18)2.112 (18)2.7544 (13)127.8 (15)
N2—H2N⋯O2ii 0.911 (17)2.243 (17)3.1358 (14)166.3 (14)

Symmetry codes: (i) ; (ii) .

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