Literature DB >> 26870464

Crystal structure of (tert-butyl-carbamo-yl)(4-chloro-2-oxo-2H-chromen-3-yl)methyl acetate.

Tetsuji Moriguchi1, Venkataprasad Jalli1, Suvratha Krishnamurthy1, Akihiko Tsuge1, Kenji Yoja2.   

Abstract

In the title compound, C17H18ClNO5, which was synthesized by reacting 4-chloro-3-formyl-coumarin, acetic acid and tert-butyl isocyanide, the acetamido side chain is convoluted with ring-to-side chain C-C-C-C, C-C-C-N and C-C-N-C torsion angles of -123.30 (14), -135.73 (12) and 176.10 (12)°, respectively. In the crystal, N-H⋯O and weak C-H⋯O hydrogen bonds are present, which together with π-π coumarin-ring inter-actions [ring centroid separations = 3.4582 (8) and 3.6421 (9) Å], give rise to a layered structure lying parallel to (001).

Entities:  

Keywords:  coumarin derivative; crystal structure; hydrogen bonding; π–π coumarin-ring inter­actions

Year:  2015        PMID: 26870464      PMCID: PMC4719945          DOI: 10.1107/S2056989015021982

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For applications of coumarin derivatives, see: Luo et al. (2012 ▸); Medina-Franco et al. (2011 ▸); Sun et al. (2013 ▸); Zen et al. (2014 ▸).

Experimental

Crystal data

C17H18ClNO5 M = 351.77 Trigonal, a = 29.831 (2) Å c = 9.7983 (8) Å V = 7551.2 (14) Å3 Z = 18 Mo Kα radiation μ = 0.25 mm−1 T = 90 K 0.50 × 0.45 × 0.45 mm

Data collection

Bruker APEXII diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▸) T min = 0.746, T max = 0.892 24469 measured reflections 2975 independent reflections 2742 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.027 wR(F 2) = 0.094 S = 1.12 2975 reflections 221 parameters H-atom parameters constrained Δρmax = 0.41 e Å−3 Δρmin = −0.31 e Å−3

Data collection: APEX2 (Bruker, 2009 ▸); cell refinement: SAINT (Bruker, 2009 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▸); molecular graphics: Mercury (Macrae et al., 2008 ▸); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989015021982/zs2353sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015021982/zs2353Isup2.hkl Supporting information file. DOI: 10.1107/S2056989015021982/zs2353Isup3.pdf Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015021982/zs2353Isup4.cml Click here for additional data file. . DOI: 10.1107/S2056989015021982/zs2353fig1.tif Mol­ecular configuration and atom-numbering scheme for the title compound with displacement ellipsoids drawn at the 50% probability level. Click here for additional data file. c . DOI: 10.1107/S2056989015021982/zs2353fig2.tif Crystal packing diagram of the title compound, viewed along the c axis, with hydrogen atoms omitted for clarity. Click here for additional data file. . DOI: 10.1107/S2056989015021982/zs2353fig3.tif Reaction scheme for the synthesis of the title compound. CCDC reference: 1437533 Additional supporting information: crystallographic information; 3D view; checkCIF report
C17H18ClNO5Dx = 1.392 Mg m3
Mr = 351.77Mo Kα radiation, λ = 0.71073 Å
Trigonal, R3Cell parameters from 24469 reflections
a = 29.831 (2) Åθ = 1.4–25.0°
c = 9.7983 (8) ŵ = 0.25 mm1
V = 7551.2 (14) Å3T = 90 K
Z = 18Prism, colorless
F(000) = 33120.50 × 0.45 × 0.45 mm
Bruker APEXII diffractometer2975 independent reflections
Radiation source: fine focus sealed tube2742 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.026
Detector resolution: 8.333 pixels mm-1θmax = 25.0°, θmin = 1.4°
ω scansh = −35→35
Absorption correction: multi-scan (SADABS; Bruker, 2009)k = −35→35
Tmin = 0.746, Tmax = 0.892l = −11→11
24469 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.027Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.094H-atom parameters constrained
S = 1.12w = 1/[σ2(Fo2) + (0.0575P)2 + 6.6693P] where P = (Fo2 + 2Fc2)/3
2975 reflections(Δ/σ)max = 0.001
221 parametersΔρmax = 0.41 e Å3
0 restraintsΔρmin = −0.31 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.21876 (5)−0.00044 (5)0.08087 (13)0.0160 (3)
C20.26499 (5)0.05104 (5)0.07629 (13)0.0157 (3)
C30.31212 (5)0.05536 (5)0.08748 (13)0.0155 (3)
C40.31867 (5)0.01052 (5)0.09456 (13)0.0158 (3)
C50.27379 (5)−0.03793 (5)0.09425 (13)0.0160 (3)
C60.27504 (6)−0.08370 (5)0.09608 (14)0.0188 (3)
H60.2446−0.11550.09580.023*
C70.32278 (6)−0.08086 (5)0.09835 (14)0.0208 (3)
H70.3244−0.11120.09920.025*
C80.36839 (6)−0.03316 (6)0.09933 (14)0.0206 (3)
H80.4002−0.03180.10150.025*
C90.36650 (5)0.01214 (5)0.09716 (14)0.0180 (3)
H90.39710.04390.09740.022*
C100.25496 (5)0.09571 (5)0.06509 (14)0.0168 (3)
H100.28790.12810.07460.02*
C110.26696 (6)0.12189 (5)−0.16856 (15)0.0206 (3)
C120.23933 (6)0.12088 (6)−0.29691 (15)0.0268 (3)
H12A0.26420.139−0.36760.04*
H12B0.21910.1373−0.2810.04*
H12C0.21690.0856−0.32440.04*
C130.21854 (5)0.09265 (5)0.17996 (14)0.0168 (3)
C140.13982 (5)0.09650 (6)0.24241 (15)0.0217 (3)
C150.16453 (7)0.13872 (7)0.35092 (18)0.0346 (4)
H15A0.19010.13470.40030.052*
H15B0.13840.1360.41290.052*
H15C0.18070.17210.30780.052*
C160.10059 (6)0.10327 (7)0.15898 (18)0.0307 (4)
H16A0.11750.13660.11550.046*
H16B0.07380.10080.2180.046*
H16C0.08570.07670.09070.046*
C170.11322 (7)0.04277 (7)0.3076 (2)0.0368 (4)
H17A0.10030.01690.23730.055*
H17B0.08490.03870.36330.055*
H17C0.13770.0390.36310.055*
Cl10.367571 (12)0.115323 (12)0.09482 (3)0.01946 (13)
N10.18014 (4)0.10112 (4)0.14609 (12)0.0179 (3)
H10.17870.10980.06320.021*
O10.17497 (4)−0.00851 (4)0.07831 (10)0.0197 (2)
O20.22535 (4)−0.04259 (3)0.09066 (10)0.0168 (2)
O30.23274 (4)0.09548 (4)−0.06642 (9)0.0183 (2)
O40.31297 (4)0.14258 (4)−0.15359 (11)0.0286 (3)
O50.22830 (4)0.08419 (4)0.29548 (10)0.0231 (2)
U11U22U33U12U13U23
C10.0201 (7)0.0159 (7)0.0134 (6)0.0101 (6)−0.0014 (5)−0.0015 (5)
C20.0187 (7)0.0151 (6)0.0130 (6)0.0083 (5)0.0001 (5)−0.0016 (5)
C30.0177 (7)0.0143 (6)0.0114 (6)0.0056 (5)0.0001 (5)−0.0021 (5)
C40.0200 (7)0.0183 (7)0.0099 (7)0.0102 (6)−0.0009 (5)−0.0018 (5)
C50.0181 (7)0.0206 (7)0.0116 (6)0.0114 (6)−0.0006 (5)−0.0014 (5)
C60.0239 (7)0.0165 (7)0.0159 (7)0.0102 (6)−0.0007 (5)−0.0004 (5)
C70.0307 (8)0.0228 (7)0.0163 (7)0.0188 (6)−0.0025 (6)−0.0023 (5)
C80.0233 (7)0.0304 (8)0.0147 (7)0.0184 (6)−0.0024 (5)−0.0032 (6)
C90.0190 (7)0.0211 (7)0.0130 (7)0.0094 (6)−0.0017 (5)−0.0031 (5)
C100.0179 (7)0.0148 (6)0.0174 (7)0.0081 (5)−0.0018 (5)−0.0018 (5)
C110.0276 (8)0.0137 (6)0.0229 (7)0.0120 (6)0.0069 (6)0.0028 (5)
C120.0358 (9)0.0211 (7)0.0211 (7)0.0122 (7)0.0023 (6)0.0034 (6)
C130.0186 (7)0.0116 (6)0.0195 (7)0.0069 (5)−0.0002 (5)−0.0019 (5)
C140.0190 (7)0.0223 (7)0.0256 (8)0.0117 (6)0.0062 (6)0.0052 (6)
C150.0316 (9)0.0434 (10)0.0342 (9)0.0227 (8)0.0053 (7)−0.0095 (7)
C160.0223 (8)0.0373 (9)0.0371 (9)0.0184 (7)0.0061 (7)0.0098 (7)
C170.0294 (9)0.0349 (9)0.0464 (10)0.0163 (8)0.0151 (8)0.0199 (8)
Cl10.01575 (19)0.01499 (19)0.0235 (2)0.00460 (13)0.00001 (12)−0.00316 (12)
N10.0199 (6)0.0183 (6)0.0176 (6)0.0112 (5)0.0021 (4)0.0023 (4)
O10.0155 (5)0.0169 (5)0.0262 (5)0.0077 (4)−0.0018 (4)−0.0009 (4)
O20.0161 (5)0.0133 (4)0.0215 (5)0.0077 (4)−0.0002 (4)−0.0008 (4)
O30.0212 (5)0.0165 (5)0.0171 (5)0.0094 (4)0.0007 (4)0.0023 (4)
O40.0242 (6)0.0313 (6)0.0299 (6)0.0137 (5)0.0078 (4)0.0079 (5)
O50.0262 (5)0.0297 (6)0.0193 (5)0.0184 (5)−0.0013 (4)−0.0007 (4)
C1—O11.2045 (16)C11—O31.3638 (17)
C1—O21.3695 (16)C11—C121.496 (2)
C1—C21.4644 (18)C12—H12A0.96
C2—C31.3507 (19)C12—H12B0.96
C2—C101.5085 (18)C12—H12C0.96
C3—C41.4469 (18)C13—O51.2260 (17)
C3—Cl11.7269 (13)C13—N11.3325 (18)
C4—C51.3952 (19)C14—N11.4802 (17)
C4—C91.4033 (19)C14—C161.521 (2)
C5—O21.3814 (16)C14—C151.527 (2)
C5—C61.3843 (19)C14—C171.528 (2)
C6—C71.384 (2)C15—H15A0.96
C6—H60.93C15—H15B0.96
C7—C81.393 (2)C15—H15C0.96
C7—H70.93C16—H16A0.96
C8—C91.380 (2)C16—H16B0.96
C8—H80.93C16—H16C0.96
C9—H90.93C17—H17A0.96
C10—O31.4475 (16)C17—H17B0.96
C10—C131.5352 (19)C17—H17C0.96
C10—H100.98N1—H10.86
C11—O41.1998 (18)
O1—C1—O2117.20 (12)C11—C12—H12B109.5
O1—C1—C2124.58 (12)H12A—C12—H12B109.5
O2—C1—C2118.21 (11)C11—C12—H12C109.5
C3—C2—C1119.15 (12)H12A—C12—H12C109.5
C3—C2—C10125.34 (12)H12B—C12—H12C109.5
C1—C2—C10115.46 (11)O5—C13—N1125.74 (13)
C2—C3—C4122.08 (12)O5—C13—C10117.08 (12)
C2—C3—Cl1120.95 (10)N1—C13—C10117.14 (12)
C4—C3—Cl1116.97 (10)N1—C14—C16106.75 (12)
C5—C4—C9117.92 (12)N1—C14—C15109.41 (12)
C5—C4—C3117.02 (12)C16—C14—C15110.54 (13)
C9—C4—C3125.02 (12)N1—C14—C17109.62 (12)
O2—C5—C6116.35 (12)C16—C14—C17109.48 (13)
O2—C5—C4121.20 (11)C15—C14—C17110.95 (14)
C6—C5—C4122.45 (12)C14—C15—H15A109.5
C7—C6—C5118.30 (13)C14—C15—H15B109.5
C7—C6—H6120.8H15A—C15—H15B109.5
C5—C6—H6120.8C14—C15—H15C109.5
C6—C7—C8120.80 (13)H15A—C15—H15C109.5
C6—C7—H7119.6H15B—C15—H15C109.5
C8—C7—H7119.6C14—C16—H16A109.5
C9—C8—C7120.20 (13)C14—C16—H16B109.5
C9—C8—H8119.9H16A—C16—H16B109.5
C7—C8—H8119.9C14—C16—H16C109.5
C8—C9—C4120.32 (13)H16A—C16—H16C109.5
C8—C9—H9119.8H16B—C16—H16C109.5
C4—C9—H9119.8C14—C17—H17A109.5
O3—C10—C2110.68 (10)C14—C17—H17B109.5
O3—C10—C13110.09 (11)H17A—C17—H17B109.5
C2—C10—C13109.95 (11)C14—C17—H17C109.5
O3—C10—H10108.7H17A—C17—H17C109.5
C2—C10—H10108.7H17B—C17—H17C109.5
C13—C10—H10108.7C13—N1—C14124.00 (12)
O4—C11—O3122.73 (13)C13—N1—H1118.0
O4—C11—C12126.18 (13)C14—N1—H1118.0
O3—C11—C12111.08 (12)C1—O2—C5122.19 (10)
C11—C12—H12A109.5C11—O3—C10116.22 (11)
O1—C1—C2—C3176.34 (13)C3—C4—C9—C8−177.79 (12)
O2—C1—C2—C3−2.70 (19)C3—C2—C10—O3114.86 (14)
O1—C1—C2—C10−1.13 (19)C1—C2—C10—O3−67.85 (14)
O2—C1—C2—C10179.83 (11)C3—C2—C10—C13−123.30 (14)
C1—C2—C3—C44.3 (2)C1—C2—C10—C1353.99 (15)
C10—C2—C3—C4−178.51 (12)O3—C10—C13—O5168.64 (11)
C1—C2—C3—Cl1−175.38 (9)C2—C10—C13—O546.45 (16)
C10—C2—C3—Cl11.81 (19)O3—C10—C13—N1−13.54 (16)
C2—C3—C4—C5−2.2 (2)C2—C10—C13—N1−135.73 (12)
Cl1—C3—C4—C5177.46 (9)O5—C13—N1—C14−6.3 (2)
C2—C3—C4—C9175.57 (13)C10—C13—N1—C14176.10 (12)
Cl1—C3—C4—C9−4.74 (19)C16—C14—N1—C13−173.64 (13)
C9—C4—C5—O2−179.48 (11)C15—C14—N1—C1366.72 (17)
C3—C4—C5—O2−1.52 (19)C17—C14—N1—C13−55.16 (18)
C9—C4—C5—C6−0.1 (2)O1—C1—O2—C5179.92 (11)
C3—C4—C5—C6177.82 (12)C2—C1—O2—C5−0.97 (18)
O2—C5—C6—C7179.39 (11)C6—C5—O2—C1−176.28 (11)
C4—C5—C6—C70.0 (2)C4—C5—O2—C13.10 (19)
C5—C6—C7—C80.3 (2)O4—C11—O3—C102.96 (18)
C6—C7—C8—C9−0.4 (2)C12—C11—O3—C10−177.30 (11)
C7—C8—C9—C40.3 (2)C2—C10—O3—C11−89.05 (13)
C5—C4—C9—C80.0 (2)C13—C10—O3—C11149.19 (11)
D—H···AD—HH···AD···AD—H···A
N1—H1···O30.862.252.6627 (17)109
N1—H1···O1i0.862.333.0787 (16)145
C9—H9···Cl10.932.683.0623 (15)105
C10—H10···Cl10.982.603.1220 (17)114
C15—H15A···O50.962.523.107 (3)120
C16—H16A···O1i0.962.563.287 (2)133
C17—H17C···O50.962.433.014 (3)119
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1⋯O1i 0.862.333.0787 (16)145
C16—H16A⋯O1i 0.962.563.287 (2)133

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Natural products as DNA methyltransferase inhibitors: a computer-aided discovery approach.

Authors:  Jose L Medina-Franco; Fabian López-Vallejo; Dirk Kuck; Frank Lyko
Journal:  Mol Divers       Date:  2010-08-10       Impact factor: 2.943

3.  Two new coumarins from Micromelum falcatum with cytotoxicity and brine shrimp larvae toxicity.

Authors:  Xiongming Luo; Weihong He; Hao Yin; Qingxin Li; Qiao Liu; Yongzhong Huang; Si Zhang
Journal:  Molecules       Date:  2012-06-06       Impact factor: 4.411

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.