Literature DB >> 26870432

Crystal structure of di-μ-acetato-di-acetatobis-(μ-6,6'-dimeth-oxy-2,2'-{[(propane-1,3-diylbis(aza-nylyl-idene)]bis-(methanylyl-idene)}diphenolato)tetra-zinc.

Xue Cai1, Hui Ning1.   

Abstract

The tetra-nuclear title complex, [Zn4(C19H20N2O4)2(CH3COO)4], is formed from two dinuclear motifs related by an inversion centre. The two crystallographically independent Zn(II) ions in the asymmetric unit are in different coordination environments. One is square-based pyramidal with one O atom of an acetate group occupying the axial position and two N and O atoms of one bmspd [H2bmspd = N,N'-bis-(3-meth-oxy-salicyl-idene)propyl-ene-1,3-di-amine] Schiff base ligand forming the basal plane. The other Zn(II) atom is six-coordinated by four O atoms of the bmspd ligand forming the equatoral plane and two O atoms of different acetate groups located in the axial positions. As a result, the two phenolic planes of the bicompartmental Schiff base ligand are distorted slightly. However, the planes of the two Schiff base ligands are parallel. In addition, the Zn-N and Zn-O bond lengths span the reasonable ranges 2.062 (2)-2.073 (2) and 1.9261 (15)-2.4356 (16) Å, respectively. The Zn⋯Zn distances separated by phenolic O atoms are 3.2466 (4) Å while the Zn⋯Zn distances bridged by acetate groups are 5.9835 (6) Å. The tetra-nuclear moieties are connected by van der Waals interactions, and form a chain along c axis.

Entities:  

Keywords:  Schiff base; acetate; crystal structure; zinc

Year:  2015        PMID: 26870432      PMCID: PMC4719841          DOI: 10.1107/S2056989015020551

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

Metal-organic coordination complexes of N,N′-bis­(salicyl­idene)ethyl­enedi­amine (salen) Schiff-base derivatives have been studied extensively within the fields of homogeneous catalysis (Wezenberg & Kleij, 2008 ▸), non-linear optics (Rigamonti et al., 2006 ▸), magnetics (Yuan et al., 2007 ▸) and biological metalloenzyme mimics (Laskin et al., 2008 ▸).

Experimental

Crystal data

[Zn4(C19H20N2O4)2(C2H3O2)4] M = 1178.48 Triclinic, a = 10.4894 (9) Å b = 10.7917 (9) Å c = 11.9550 (11) Å α = 103.425 (2)° β = 94.323 (1)° γ = 115.677 (1)° V = 1162.17 (18) Å3 Z = 1 Mo Kα radiation μ = 2.12 mm−1 T = 298 K 0.15 × 0.10 × 0.08 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▸) T min = 0.742, T max = 0.849 6281 measured reflections 4497 independent reflections 3969 reflections with I > 2σ(I) R int = 0.013

Refinement

R[F 2 > 2σ(F 2)] = 0.024 wR(F 2) = 0.071 S = 1.05 4497 reflections 318 parameters H-atom parameters constrained Δρmax = 0.26 e Å−3 Δρmin = −0.27 e Å−3

Data collection: APEX2 (Bruker, 2004 ▸); cell refinement: SAINT-Plus (Bruker, 2001 ▸); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▸); molecular graphics: XP in SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) 1, I. DOI: 10.1107/S2056989015020551/pj2024sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015020551/pj2024Isup2.hkl Click here for additional data file. ORTEP 4 2 4 . DOI: 10.1107/S2056989015020551/pj2024fig1.tif ORTEP diagram of mol­ecular structure for complex [Zn4(bmspd)2(OAc)4] with atoms drawn as 50% probability ellipsoids. Click here for additional data file. 4 2 4 ac . DOI: 10.1107/S2056989015020551/pj2024fig2.tif The perspective drawing of complex [Zn4(bmspd)2(OAc)4] packing in ac plane. CCDC reference: 724776 Additional supporting information: crystallographic information; 3D view; checkCIF report
[Zn4(C19H20N2O4)2(C2H3O2)4]Z = 1
Mr = 1178.48F(000) = 604
Triclinic, P1Dx = 1.684 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 10.4894 (9) ÅCell parameters from 4019 reflections
b = 10.7917 (9) Åθ = 2.2–27.5°
c = 11.9550 (11) ŵ = 2.12 mm1
α = 103.425 (2)°T = 298 K
β = 94.323 (1)°Block, yellow
γ = 115.677 (1)°0.15 × 0.10 × 0.08 mm
V = 1162.17 (18) Å3
Bruker SMART APEX CCD area-detector diffractometer4497 independent reflections
Radiation source: fine-focus sealed tube3969 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.013
Detector resolution: 0 pixels mm-1θmax = 26.0°, θmin = 1.8°
phi and ω scansh = −6→12
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)k = −13→13
Tmin = 0.742, Tmax = 0.849l = −13→14
6281 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.024Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.071H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0367P)2 + 0.3975P] where P = (Fo2 + 2Fc2)/3
4497 reflections(Δ/σ)max = 0.006
318 parametersΔρmax = 0.26 e Å3
0 restraintsΔρmin = −0.27 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.5747 (2)0.1717 (3)0.1390 (2)0.0479 (6)
H1A0.56510.09380.16920.072*
H1B0.53480.13500.05630.072*
H1C0.52390.21860.17830.072*
C20.7601 (2)0.3909 (2)0.12186 (18)0.0334 (4)
C30.6657 (2)0.4234 (3)0.0636 (2)0.0431 (5)
H30.56660.36420.04970.052*
C40.7206 (3)0.5459 (3)0.0258 (2)0.0540 (7)
H40.65770.5680−0.01440.065*
C50.8656 (3)0.6339 (3)0.0473 (2)0.0485 (6)
H50.90050.71360.01930.058*
C60.9640 (2)0.6057 (2)0.11148 (18)0.0344 (5)
C70.9110 (2)0.4824 (2)0.14919 (17)0.0288 (4)
C81.1149 (2)0.7072 (2)0.13321 (19)0.0374 (5)
H81.13840.77910.09640.045*
C91.3647 (2)0.8311 (2)0.2054 (2)0.0428 (5)
H9A1.35630.91910.21720.051*
H9B1.39590.81320.13160.051*
C101.4783 (2)0.8521 (2)0.3040 (2)0.0438 (5)
H10A1.44110.85670.37590.053*
H10B1.56270.94360.31520.053*
C111.5238 (3)0.7346 (3)0.2830 (2)0.0503 (6)
H11A1.54150.71560.20390.060*
H11B1.61380.76830.33700.060*
C121.4643 (2)0.5208 (3)0.33241 (19)0.0396 (5)
H121.56420.55830.34660.048*
C131.3848 (2)0.3817 (2)0.35174 (18)0.0362 (5)
C141.4677 (3)0.3186 (3)0.3880 (2)0.0446 (6)
H141.56790.36890.40150.053*
C151.4038 (3)0.1858 (3)0.4035 (2)0.0499 (6)
H151.46020.14650.42800.060*
C161.2532 (3)0.1083 (3)0.3828 (2)0.0435 (5)
H161.20930.01690.39250.052*
C171.1699 (2)0.1679 (2)0.34775 (18)0.0354 (5)
C181.2338 (2)0.3069 (2)0.33311 (17)0.0310 (4)
C190.9443 (3)−0.0457 (3)0.3169 (3)0.0661 (8)
H19A0.8425−0.07610.29910.099*
H19B0.9686−0.05850.39100.099*
H19C0.9691−0.10210.25660.099*
C200.7933 (2)−0.0082 (2)0.06099 (19)0.0343 (4)
C210.7849 (2)−0.1000 (3)−0.0585 (2)0.0422 (5)
H21A0.7129−0.1974−0.07040.063*
H21B0.8769−0.0973−0.06330.063*
H21C0.7594−0.0635−0.11790.063*
C220.8649 (2)0.3057 (2)0.48569 (18)0.0314 (4)
C231.0099 (3)0.3370 (3)0.5482 (2)0.0493 (6)
H23A1.07780.43540.55840.074*
H23B1.04240.27470.50260.074*
H23C1.00220.32080.62360.074*
N11.22093 (19)0.71044 (18)0.19729 (15)0.0340 (4)
N21.41504 (19)0.59888 (19)0.29835 (16)0.0359 (4)
O10.99395 (15)0.44590 (15)0.20882 (13)0.0329 (3)
O21.14934 (15)0.35966 (15)0.30055 (13)0.0343 (3)
O30.72225 (16)0.27149 (18)0.15849 (17)0.0488 (4)
O41.02202 (17)0.10166 (16)0.32310 (15)0.0437 (4)
O50.89752 (18)0.11959 (17)0.09127 (14)0.0436 (4)
O60.7050 (2)−0.0567 (2)0.12112 (17)0.0590 (5)
O70.82953 (16)0.25334 (17)0.37574 (13)0.0409 (4)
O80.77997 (17)0.33076 (18)0.54407 (13)0.0423 (4)
Zn11.20447 (2)0.56385 (2)0.28798 (2)0.02906 (8)
Zn20.92824 (2)0.25063 (2)0.24271 (2)0.02988 (8)
U11U22U33U12U13U23
C10.0285 (12)0.0518 (14)0.0543 (15)0.0087 (11)0.0080 (10)0.0197 (12)
C20.0322 (11)0.0350 (11)0.0342 (11)0.0155 (9)0.0064 (9)0.0125 (9)
C30.0314 (12)0.0494 (13)0.0485 (13)0.0184 (11)0.0017 (10)0.0174 (11)
C40.0471 (15)0.0605 (16)0.0624 (17)0.0293 (13)−0.0030 (12)0.0281 (14)
C50.0517 (15)0.0470 (14)0.0532 (15)0.0243 (12)0.0024 (12)0.0258 (12)
C60.0383 (12)0.0344 (11)0.0332 (11)0.0177 (9)0.0062 (9)0.0136 (9)
C70.0311 (10)0.0288 (10)0.0270 (10)0.0145 (8)0.0052 (8)0.0081 (8)
C80.0461 (13)0.0308 (11)0.0363 (11)0.0151 (10)0.0110 (10)0.0164 (9)
C90.0401 (13)0.0356 (12)0.0433 (13)0.0061 (10)0.0100 (10)0.0178 (10)
C100.0331 (12)0.0387 (12)0.0445 (13)0.0024 (10)0.0072 (10)0.0141 (10)
C110.0302 (12)0.0540 (15)0.0619 (16)0.0099 (11)0.0159 (11)0.0262 (13)
C120.0259 (11)0.0473 (13)0.0384 (12)0.0149 (10)0.0045 (9)0.0046 (10)
C130.0352 (12)0.0427 (12)0.0292 (10)0.0220 (10)0.0001 (8)0.0019 (9)
C140.0394 (13)0.0543 (14)0.0402 (12)0.0284 (12)−0.0019 (10)0.0041 (11)
C150.0579 (16)0.0616 (16)0.0421 (13)0.0432 (14)−0.0025 (11)0.0093 (11)
C160.0597 (16)0.0434 (13)0.0363 (12)0.0326 (12)0.0053 (11)0.0113 (10)
C170.0424 (12)0.0379 (11)0.0291 (10)0.0226 (10)0.0064 (9)0.0077 (9)
C180.0332 (11)0.0353 (11)0.0254 (10)0.0193 (9)0.0029 (8)0.0048 (8)
C190.0645 (19)0.0417 (15)0.085 (2)0.0146 (14)0.0019 (16)0.0313 (15)
C200.0313 (11)0.0406 (12)0.0349 (11)0.0190 (10)0.0052 (9)0.0134 (9)
C210.0367 (12)0.0430 (12)0.0406 (12)0.0185 (10)0.0017 (10)0.0035 (10)
C220.0355 (11)0.0279 (10)0.0316 (10)0.0131 (9)0.0107 (9)0.0121 (8)
C230.0518 (15)0.0672 (16)0.0374 (12)0.0374 (13)0.0075 (11)0.0111 (12)
N10.0332 (10)0.0307 (9)0.0325 (9)0.0083 (8)0.0084 (7)0.0119 (7)
N20.0279 (9)0.0393 (10)0.0364 (10)0.0125 (8)0.0083 (7)0.0100 (8)
O10.0255 (7)0.0312 (7)0.0399 (8)0.0094 (6)0.0001 (6)0.0163 (6)
O20.0269 (7)0.0315 (7)0.0460 (9)0.0138 (6)0.0035 (6)0.0149 (6)
O30.0254 (8)0.0468 (9)0.0741 (12)0.0089 (7)0.0038 (8)0.0355 (9)
O40.0397 (9)0.0345 (8)0.0589 (10)0.0168 (7)0.0095 (8)0.0182 (7)
O50.0423 (9)0.0382 (9)0.0384 (9)0.0129 (7)0.0064 (7)0.0024 (7)
O60.0571 (11)0.0699 (12)0.0544 (11)0.0260 (10)0.0266 (9)0.0283 (10)
O70.0369 (8)0.0534 (9)0.0281 (8)0.0185 (7)0.0093 (6)0.0086 (7)
O80.0365 (9)0.0551 (10)0.0323 (8)0.0206 (8)0.0113 (7)0.0077 (7)
Zn10.02476 (13)0.02968 (13)0.03096 (13)0.00999 (10)0.00664 (9)0.01083 (10)
Zn20.02869 (14)0.02835 (13)0.02989 (13)0.01035 (10)0.00723 (10)0.00921 (10)
C1—O31.412 (3)C15—C161.398 (4)
C1—H1A0.9600C15—H150.9300
C1—H1B0.9600C16—C171.382 (3)
C1—H1C0.9600C16—H160.9300
C2—O31.362 (3)C17—O41.370 (3)
C2—C31.378 (3)C17—C181.414 (3)
C2—C71.416 (3)C18—O21.322 (2)
C3—C41.394 (3)C19—O41.418 (3)
C3—H30.9300C19—H19A0.9600
C4—C51.363 (4)C19—H19B0.9600
C4—H40.9300C19—H19C0.9600
C5—C61.417 (3)C20—O61.226 (3)
C5—H50.9300C20—O51.277 (3)
C6—C71.399 (3)C20—C211.509 (3)
C6—C81.441 (3)C21—H21A0.9600
C7—O11.325 (2)C21—H21B0.9600
C8—N11.285 (3)C21—H21C0.9600
C8—H80.9300C22—O81.253 (2)
C9—N11.482 (3)C22—O71.259 (2)
C9—C101.514 (3)C22—C231.501 (3)
C9—H9A0.9700C23—H23A0.9600
C9—H9B0.9700C23—H23B0.9600
C10—C111.515 (4)C23—H23C0.9600
C10—H10A0.9700N1—Zn12.0727 (17)
C10—H10B0.9700N2—Zn12.0616 (18)
C11—N21.479 (3)O1—Zn12.0203 (14)
C11—H11A0.9700O1—Zn22.0639 (14)
C11—H11B0.9700O2—Zn22.0632 (14)
C12—N21.284 (3)O2—Zn12.0676 (14)
C12—C131.452 (3)O3—Zn22.4356 (16)
C12—H120.9300O5—Zn21.9261 (15)
C13—C181.402 (3)O7—Zn21.9635 (14)
C13—C141.415 (3)O8—Zn1i2.0201 (15)
C14—C151.359 (4)Zn1—O8i2.0201 (15)
C14—H140.9300
O3—C1—H1A109.5C13—C18—C17118.12 (19)
O3—C1—H1B109.5O4—C19—H19A109.5
H1A—C1—H1B109.5O4—C19—H19B109.5
O3—C1—H1C109.5H19A—C19—H19B109.5
H1A—C1—H1C109.5O4—C19—H19C109.5
H1B—C1—H1C109.5H19A—C19—H19C109.5
O3—C2—C3125.4 (2)H19B—C19—H19C109.5
O3—C2—C7112.88 (18)O6—C20—O5124.8 (2)
C3—C2—C7121.7 (2)O6—C20—C21120.8 (2)
C2—C3—C4119.1 (2)O5—C20—C21114.42 (19)
C2—C3—H3120.4C20—C21—H21A109.5
C4—C3—H3120.4C20—C21—H21B109.5
C5—C4—C3120.6 (2)H21A—C21—H21B109.5
C5—C4—H4119.7C20—C21—H21C109.5
C3—C4—H4119.7H21A—C21—H21C109.5
C4—C5—C6121.0 (2)H21B—C21—H21C109.5
C4—C5—H5119.5O8—C22—O7120.8 (2)
C6—C5—H5119.5O8—C22—C23119.36 (19)
C7—C6—C5119.1 (2)O7—C22—C23119.80 (19)
C7—C6—C8123.83 (19)C22—C23—H23A109.5
C5—C6—C8117.1 (2)C22—C23—H23B109.5
O1—C7—C6123.77 (18)H23A—C23—H23B109.5
O1—C7—C2117.92 (17)C22—C23—H23C109.5
C6—C7—C2118.31 (18)H23A—C23—H23C109.5
N1—C8—C6127.81 (19)H23B—C23—H23C109.5
N1—C8—H8116.1C8—N1—C9115.46 (18)
C6—C8—H8116.1C8—N1—Zn1125.35 (15)
N1—C9—C10113.12 (18)C9—N1—Zn1119.19 (14)
N1—C9—H9A109.0C12—N2—C11116.01 (19)
C10—C9—H9A109.0C12—N2—Zn1124.81 (15)
N1—C9—H9B109.0C11—N2—Zn1118.53 (15)
C10—C9—H9B109.0C7—O1—Zn1129.06 (12)
H9A—C9—H9B107.8C7—O1—Zn2125.64 (12)
C9—C10—C11114.1 (2)Zn1—O1—Zn2105.29 (6)
C9—C10—H10A108.7C18—O2—Zn2127.10 (13)
C11—C10—H10A108.7C18—O2—Zn1129.24 (13)
C9—C10—H10B108.7Zn2—O2—Zn1103.62 (6)
C11—C10—H10B108.7C2—O3—C1119.07 (18)
H10A—C10—H10B107.6C2—O3—Zn2113.52 (12)
N2—C11—C10113.20 (19)C1—O3—Zn2127.31 (14)
N2—C11—H11A108.9C17—O4—C19119.41 (19)
C10—C11—H11A108.9C20—O5—Zn2120.25 (14)
N2—C11—H11B108.9C22—O7—Zn2137.14 (14)
C10—C11—H11B108.9C22—O8—Zn1i135.32 (15)
H11A—C11—H11B107.8O1—Zn1—O8i109.18 (6)
N2—C12—C13128.7 (2)O1—Zn1—N2149.75 (7)
N2—C12—H12115.7O8i—Zn1—N298.57 (7)
C13—C12—H12115.7O1—Zn1—O275.35 (5)
C18—C13—C14119.5 (2)O8i—Zn1—O2100.83 (6)
C18—C13—C12123.98 (19)N2—Zn1—O288.08 (6)
C14—C13—C12116.5 (2)O1—Zn1—N188.64 (6)
C15—C14—C13121.3 (2)O8i—Zn1—N1103.96 (7)
C15—C14—H14119.3N2—Zn1—N196.30 (7)
C13—C14—H14119.3O2—Zn1—N1153.84 (7)
C14—C15—C16120.0 (2)O5—Zn2—O7137.44 (7)
C14—C15—H15120.0O5—Zn2—O2104.92 (7)
C16—C15—H15120.0O7—Zn2—O2110.70 (6)
C17—C16—C15119.8 (2)O5—Zn2—O1103.31 (7)
C17—C16—H16120.1O7—Zn2—O1107.96 (6)
C15—C16—H16120.1O2—Zn2—O174.53 (5)
O4—C17—C16125.1 (2)O5—Zn2—O385.68 (7)
O4—C17—C18113.64 (18)O7—Zn2—O379.46 (6)
C16—C17—C18121.3 (2)O2—Zn2—O3143.50 (5)
O2—C18—C13122.92 (19)O1—Zn2—O369.03 (5)
O2—C18—C17118.95 (19)
  5 in total

1.  Material applications for salen frameworks.

Authors:  Sander J Wezenberg; Arjan W Kleij
Journal:  Angew Chem Int Ed Engl       Date:  2008       Impact factor: 15.336

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Copper(II) complexes of salen analogues with two differently substituted (push-pull) salicylaldehyde moieties. A study on the modulation of electronic asymmetry and nonlinear optical properties.

Authors:  Luca Rigamonti; Francesco Demartin; Alessandra Forni; Stefania Righetto; Alessandro Pasini
Journal:  Inorg Chem       Date:  2006-12-25       Impact factor: 5.165

4.  Azide-bridged one-dimensional Mn(III) polymers: effects of side group of Schiff base ligands on structure and magnetism.

Authors:  Mei Yuan; Fei Zhao; Wen Zhang; Zhe-Ming Wang; Song Gao
Journal:  Inorg Chem       Date:  2007-11-22       Impact factor: 5.165

5.  Energetics and dynamics of electron transfer and proton transfer in dissociation of metal(III)(salen)-peptide complexes in the gas phase.

Authors:  Julia Laskin; Zhibo Yang; Ivan K Chu
Journal:  J Am Chem Soc       Date:  2008-02-12       Impact factor: 15.419

  5 in total

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