Literature DB >> 26870419

Crystal structure of N-[(1S,2S)-2-amino-cyclo-hex-yl]-2,4,6-tri-methyl-benzene-sulfonamide.

Felix N Ngassa1, Shannon M Biros1, Richard J Staples2.   

Abstract

The title compound, C15H24N2O2S, was synthesized via a substitution reaction between the enanti-opure (1S,2S)-(+)-1,2-di-amino-cyclo-hexane and 2,4,6-tri-methyl-benzene-1-sulfonyl chloride. The cyclo-hexyl and phenyl substituents are oriented gauche around the sulfonamide S-N bond. In the crystal, mol-ecules are linked via N-H⋯N hydrogen bonds, forming chains propagating along [100].

Entities:  

Keywords:  chiral compound; crystal structure; hydrogen bond; sulfonamide

Year:  2015        PMID: 26870419      PMCID: PMC4719828          DOI: 10.1107/S205698901502191X

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Chemical context

Many sulfonamides have been reported as anti­cancer, anti-inflammatory, and anti­viral agents (Navia, 2000 ▸; Yan et al., 2006 ▸; Palakurthy & Mandal, 2011 ▸). The use of sulfonamides as catalysts in asymmetric synthesis has also been reported (Lao et al., 2009 ▸; Feng et al., 2010 ▸; Jin et al., 2010 ▸). Through explicit hydrogen-bonding inter­actions with specific functional groups, the electrophilicity and stereoselectivity of a given substrate is enhanced. Conjugate addition reactions of aldehydes and ketones to nitro­alkenes, catalyzed by chiral primary amines, have been reported (Huang & Jacobsen, 2006 ▸; Rabalakos & Wulff, 2008 ▸; Lao et al., 2009 ▸; Sun et al., 2012 ▸; Zhou et al., 2014 ▸; Ruiz-Olalla et al., 2015 ▸; Yang et al., 2015 ▸). The catalytic activity of chiral primary amine organocatalysts with particular emphasis on the role of the N—H acidity and hydrogen bonding has also been investigated (Lao et al., 2009 ▸). Although the N—H acidity and hydrogen-bonding modes could have an effect on the catalytic activity of the organocatalysts, the nature of the substrate and reaction conditions could be more important. Asymmetric conjugate addition reactions of aldehydes to nitro­alkenes have also been reported as a convenient synthesis of γ-amino acids (Horne & Gellman, 2008 ▸; Wiesner et al., 2008 ▸; Chi et al., 2008 ▸). In line with our research inter­est in the synthesis of heterogeneous foldamers (Hayen et al., 2004 ▸), we synthesized the title compound as a chiral organocatalyst for conjugate addition. This conjugate addition was then applied for the synthesis of γ-amino acids, which have been shown to be inter­esting foldamer building blocks (Horne & Gellman, 2008 ▸). Therefore, as the title compound is of inter­est in our ongoing effort on foldamer design and synthesis, we report here on the synthesis and crystal structure of this chiral sulfonamide.

Structural commentary

The asymmetric part of the unit cell is shown in Fig. 1 ▸ along with the atom-numbering scheme. The absolute stereochemistry of this chiral sulfonamide was confirmed by a Flack parameter of 0.00 (2) (Parsons et al., 2013 ▸). The cyclo­hexyl (C1–C6) and benzene (C7–C12) substituents are oriented gauche around the sulfonamide S—N bond, with a C1—N1—S1—C7 torsion angle of 70.4 (2)°. A weak intra­molecular inter­action is present between the amine H2A atom and the sp 2-hybridized sulfonamide N1 atom (Table 1 ▸).
Figure 1

The asymmetric part of the unit cell along with the atom-numbering scheme and displacement ellipsoids drawn at the 50% probability level. An intra­molecular N—H⋯N inter­action is shown with a blue dashed line. Only N—H hydrogens are shown for clarity.

Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H2A⋯N10.89 (3)2.43 (3)2.877 (3)111 (2)
N1—H1⋯N2i 0.79 (3)2.14 (3)2.921 (3)170 (3)

Symmetry code: (i) .

As described in the Database survey section below, the structure of a racemic crystal of this compound has been reported (FAVHEP; Balsells, et al., 1998 ▸). In this crystal, there are two crystallographically unique mol­ecules of the sulfonamide compound in the asymmetric unit. Here, the cyclo­hexyl and benzene substituents are oriented gauche around the S—N bond with torsion angles of 86.8 (8) and 69.1 (7)°. While we expected that there would be an intra­molecular hydrogen bond in this crystal, in the model deposited in the CSD there are no intra­molecular hydrogen bonds present between the amine N—H group and the sulfonamide N atom.

Supra­molecular features

Mol­ecules of the title compound are held together in the solid state by inter­molecular hydrogen-bonding inter­actions between the donor sulfonamide N1—H1 and the acceptor amine N2 atoms (Table 1 ▸ and Fig. 2 ▸). These hydrogen bonds arrange mol­ecules into supra­molecular chains that are oriented along the [100] axis (Fig. 2 ▸). Weaker N2—H2B⋯O1(1 + x, y, z) inter­actions with an H2B⋯O1(1 + x, y, z) distance of 2.72 Å between the donor amine N2H2B and the acceptor sulfonamide O1 atoms can also be noticed within this chain.
Figure 2

Intra- and inter­molecular hydrogen-bonding inter­actions present in the crystal. Hydrogen bonds are drawn as blue dashed lines. Only N—H hydrogens are shown for clarity. [Symmetry code: (i) x − , −y + , −z + 1.]

As for the racemic crystal FAVHEP, in the model deposited in the CSD there is one inter­molecular hydrogen bond present between a donor sulfonamide N1—H1 and a nearby amine acceptor N atom [D⋯H = 0.860 (7) Å; H⋯A = 2.160 (8) Å; D⋯A = 3.011 (8) Å; D—H⋯A = 169.9 (5)°].

Database survey

The Cambridge Structural Database (CSD, Version 5.36, May 2015; Groom & Allen, 2014 ▸) contains 35 sulfonamides bearing a mesitylene group on the S atom. Of these, there are four structures where the substituent bonded to the sulfonamide N atom is an aliphatic six-membered ring. In structures RAWMAF (Hou et al., 2012 ▸) and ZIQPAS (Wu et al., 2014 ▸), the amino­cyclo­hexane substituent is part of a larger fused-ring system. Inter­estingly, there are two structures with 1,2-di­amino­cyclo­hexane rings as the amide substituent. In structure OTOPAP (Schwarz et al., 2010 ▸), both amines of the trans-1,2-di­amino­cyclo­hexane ring are bonded to a mesitylsulfonamide group. Structure FAVHEP (Balsells et al., 1998 ▸) is the same as the title compound, but is present as a racemic mixture that crystallized in the space group P .

Synthesis and crystallization

To a stirred solution of (1S,2S)-(+)-1,2-di­amino­cyclo­hexane (0.77 g, 6.74 mmol) in 5 ml of CH2Cl2 at 273 K was added a solution of 2,4,6-tri­methyl­benzene-1-sulfonyl chloride (0.44 g, 2.01 mmol) in 5 ml CH2Cl2. After the addition was complete (20 min), the mixture was allowed to warm to room temperature and stirred overnight. The reaction mixture was washed with H2O (3 × 25 ml) and the aqueous layer was back-extracted with CH2Cl2 (20 ml). The combined organic extracts were dried over Na2SO4 and the solvent was removed under reduced pressure. The residue was purified by column chromatography over silica gel (CH2Cl2/EtOAc 1:1 v/v) to afford a pale-yellow–white solid (yield: 0.46 g, 78%). Part of the purified product was redissolved in CH2Cl2 and after slow evaporation for several days, white large chunky crystals (stained yellow) were formed that were suitable for analysis by X-ray diffraction (m.p. 406–407 K).

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 2 ▸. The positions of all non-polar H atoms were calculated geometrically and refined to ride on their parent atoms, with U iso(H) = 1.2U eq(C) for methine, methyl­ene and aryl groups, and U iso(H) = 1.5U eq(C) for methyl groups. H atoms bonded directly to N atoms (H1, H2A and H2B) were located in difference-Fourier maps and refined isotropically.
Table 2

Experimental details

Crystal data
Chemical formulaC15H24N2O2S
M r 296.42
Crystal system, space groupOrthorhombic, P212121
Temperature (K)173
a, b, c (Å)6.5215 (4), 10.0202 (6), 23.3660 (15)
V3)1526.89 (16)
Z 4
Radiation typeMo Kα
μ (mm−1)0.22
Crystal size (mm)0.37 × 0.20 × 0.15
 
Data collection
DiffractometerBruker APEXII CCD
Absorption correctionMulti-scan (SADABS; Bruker, 2014)
T min, T max 0.706, 0.745
No. of measured, independent and observed [I > 2σ(I)] reflections25587, 2799, 2667
R int 0.034
(sin θ/λ)max−1)0.602
 
Refinement
R[F 2 > 2σ(F 2)], wR(F 2), S 0.029, 0.071, 1.06
No. of reflections2799
No. of parameters196
H-atom treatmentH atoms treated by a mixture of independent and constrained refinement
Δρmax, Δρmin (e Å−3)0.19, −0.21
Absolute structureFlack parameter x determined using 1098 quotients [(I +)−(I )]/[(I +)+(I )] (Parsons et al., 2013)
Absolute structure parameter0.00 (2)

Computer programs: APEX2 ad SAINT (Bruker, 2013 ▸), SHELXS97 (Sheldrick, 2008 ▸), SHELXL2014 (Sheldrick, 2015 ▸), OLEX2 (Dolomanov et al., 2009 ▸; Bourhis et al., 2015 ▸) and CrystalMaker (Palmer, 2007 ▸).

Crystal structure: contains datablock(s) I. DOI: 10.1107/S205698901502191X/gk2646sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S205698901502191X/gk2646Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S205698901502191X/gk2646Isup3.cml CCDC reference: 1437453 Additional supporting information: crystallographic information; 3D view; checkCIF report
C15H24N2O2SDx = 1.289 Mg m3
Mr = 296.42Mo Kα radiation, λ = 0.71073 Å
Orthorhombic, P212121Cell parameters from 9968 reflections
a = 6.5215 (4) Åθ = 2.2–25.3°
b = 10.0202 (6) ŵ = 0.22 mm1
c = 23.3660 (15) ÅT = 173 K
V = 1526.89 (16) Å3Block, colourless
Z = 40.37 × 0.20 × 0.15 mm
F(000) = 640
Bruker APEXII CCD diffractometer2799 independent reflections
Radiation source: sealed tube2667 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.034
Detector resolution: 8 pixels mm-1θmax = 25.4°, θmin = 1.7°
φ and ω scansh = −7→7
Absorption correction: multi-scan (SADABS; Bruker, 2014)k = −12→12
Tmin = 0.706, Tmax = 0.745l = −28→28
25587 measured reflections
Refinement on F2Hydrogen site location: mixed
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.029w = 1/[σ2(Fo2) + (0.0313P)2 + 0.5049P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.071(Δ/σ)max < 0.001
S = 1.06Δρmax = 0.19 e Å3
2799 reflectionsΔρmin = −0.21 e Å3
196 parametersAbsolute structure: Flack parameter x determined using 1098 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons et al., 2013)
0 restraintsAbsolute structure parameter: 0.00 (2)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
S10.39425 (9)0.81200 (6)0.62892 (2)0.03018 (16)
O10.2464 (3)0.72704 (19)0.65596 (8)0.0412 (4)
O20.3238 (3)0.93797 (17)0.60697 (8)0.0408 (5)
N10.5015 (3)0.7361 (2)0.57616 (9)0.0297 (5)
N20.9140 (3)0.6769 (2)0.54061 (8)0.0287 (4)
C10.5776 (3)0.5984 (2)0.58084 (9)0.0238 (5)
H1A0.64250.58720.61930.029*
C20.7442 (3)0.5816 (2)0.53502 (9)0.0234 (5)
H20.67800.59860.49710.028*
C30.8271 (3)0.4398 (2)0.53360 (10)0.0273 (5)
H3A0.90520.42250.56920.033*
H3B0.92280.43060.50090.033*
C40.6574 (4)0.3363 (2)0.52793 (10)0.0308 (5)
H4A0.71740.24570.53000.037*
H4B0.59020.34600.49020.037*
C50.4980 (4)0.3528 (2)0.57518 (11)0.0314 (5)
H5A0.38640.28710.56960.038*
H5B0.56240.33530.61280.038*
C60.4094 (4)0.4934 (2)0.57442 (10)0.0300 (5)
H6A0.30950.50310.60610.036*
H6B0.33560.50800.53790.036*
C70.5988 (4)0.8413 (2)0.67770 (9)0.0252 (5)
C80.7523 (4)0.9336 (2)0.66163 (9)0.0270 (5)
C90.9071 (4)0.9619 (2)0.69984 (10)0.0321 (5)
H91.01191.02250.68870.039*
C100.9154 (4)0.9054 (2)0.75383 (10)0.0340 (6)
C110.7662 (4)0.8131 (3)0.76822 (10)0.0346 (5)
H110.77240.77230.80490.042*
C120.6078 (4)0.7775 (2)0.73148 (9)0.0291 (5)
C130.7568 (5)1.0087 (2)0.60541 (10)0.0384 (6)
H13A0.70840.95020.57460.058*
H13B0.89741.03730.59720.058*
H13C0.66751.08710.60800.058*
C141.0799 (5)0.9459 (3)0.79566 (13)0.0532 (8)
H14A1.21170.95230.77570.080*
H14B1.08970.87890.82610.080*
H14C1.04521.03270.81240.080*
C150.4607 (5)0.6726 (3)0.75300 (12)0.0440 (7)
H15A0.32360.71160.75690.066*
H15B0.50710.63990.79030.066*
H15C0.45590.59830.72580.066*
H2A0.864 (5)0.754 (3)0.5537 (12)0.047 (8)*
H10.484 (5)0.768 (3)0.5458 (13)0.040 (8)*
H2B1.003 (5)0.645 (3)0.5683 (13)0.045 (8)*
U11U22U33U12U13U23
S10.0271 (3)0.0327 (3)0.0307 (3)0.0072 (3)0.0005 (3)−0.0065 (2)
O10.0275 (8)0.0496 (11)0.0465 (10)−0.0037 (8)0.0092 (8)−0.0111 (8)
O20.0427 (10)0.0387 (10)0.0410 (10)0.0196 (8)−0.0057 (8)−0.0067 (8)
N10.0371 (11)0.0293 (11)0.0228 (10)0.0109 (9)−0.0014 (9)−0.0010 (9)
N20.0283 (10)0.0250 (10)0.0329 (10)−0.0021 (9)0.0002 (9)−0.0004 (9)
C10.0239 (11)0.0250 (11)0.0225 (10)0.0044 (9)−0.0012 (9)−0.0009 (9)
C20.0228 (10)0.0238 (11)0.0236 (10)0.0009 (9)0.0001 (9)0.0016 (9)
C30.0261 (11)0.0259 (12)0.0300 (12)0.0053 (10)0.0036 (9)0.0003 (9)
C40.0357 (13)0.0241 (11)0.0326 (12)0.0008 (10)0.0001 (10)−0.0010 (9)
C50.0315 (13)0.0313 (13)0.0315 (12)−0.0059 (10)0.0014 (10)0.0010 (10)
C60.0229 (11)0.0359 (12)0.0312 (11)−0.0006 (11)0.0032 (11)−0.0033 (10)
C70.0278 (11)0.0242 (10)0.0235 (10)0.0038 (10)0.0040 (10)−0.0040 (8)
C80.0327 (12)0.0217 (11)0.0267 (11)0.0030 (10)0.0081 (10)−0.0020 (9)
C90.0291 (12)0.0290 (12)0.0382 (13)−0.0015 (11)0.0069 (12)−0.0045 (10)
C100.0319 (13)0.0361 (13)0.0340 (13)0.0076 (11)−0.0008 (11)−0.0102 (10)
C110.0465 (14)0.0342 (12)0.0232 (11)0.0075 (13)0.0014 (11)0.0010 (10)
C120.0367 (12)0.0247 (11)0.0259 (11)0.0018 (11)0.0062 (11)−0.0010 (9)
C130.0536 (16)0.0285 (12)0.0331 (13)−0.0021 (12)0.0098 (13)0.0058 (11)
C140.0455 (18)0.0629 (19)0.0512 (17)0.0037 (16)−0.0124 (16)−0.0140 (15)
C150.0569 (18)0.0351 (14)0.0401 (14)−0.0079 (13)0.0094 (13)0.0066 (12)
S1—O11.4330 (19)C6—H6A0.9900
S1—O21.4379 (18)C6—H6B0.9900
S1—N11.609 (2)C7—C81.414 (3)
S1—C71.779 (2)C7—C121.411 (3)
N1—C11.470 (3)C8—C91.377 (3)
N1—H10.79 (3)C8—C131.514 (3)
N2—C21.469 (3)C9—H90.9500
N2—H2A0.89 (3)C9—C101.384 (3)
N2—H2B0.93 (3)C10—C111.384 (4)
C1—H1A1.0000C10—C141.507 (4)
C1—C21.535 (3)C11—H110.9500
C1—C61.527 (3)C11—C121.390 (4)
C2—H21.0000C12—C151.509 (3)
C2—C31.521 (3)C13—H13A0.9800
C3—H3A0.9900C13—H13B0.9800
C3—H3B0.9900C13—H13C0.9800
C3—C41.522 (3)C14—H14A0.9800
C4—H4A0.9900C14—H14B0.9800
C4—H4B0.9900C14—H14C0.9800
C4—C51.525 (3)C15—H15A0.9800
C5—H5A0.9900C15—H15B0.9800
C5—H5B0.9900C15—H15C0.9800
C5—C61.523 (3)
O1—S1—O2117.62 (12)C1—C6—H6A109.4
O1—S1—N1110.46 (11)C1—C6—H6B109.4
O1—S1—C7108.68 (11)C5—C6—C1111.33 (19)
O2—S1—N1106.31 (11)C5—C6—H6A109.4
O2—S1—C7108.86 (11)C5—C6—H6B109.4
N1—S1—C7104.06 (11)H6A—C6—H6B108.0
S1—N1—H1116 (2)C8—C7—S1117.96 (16)
C1—N1—S1122.24 (17)C12—C7—S1121.78 (19)
C1—N1—H1120 (2)C12—C7—C8120.2 (2)
C2—N2—H2A108 (2)C7—C8—C13124.7 (2)
C2—N2—H2B108.1 (18)C9—C8—C7118.8 (2)
H2A—N2—H2B107 (3)C9—C8—C13116.5 (2)
N1—C1—H1A108.4C8—C9—H9118.8
N1—C1—C2106.87 (18)C8—C9—C10122.4 (2)
N1—C1—C6113.39 (19)C10—C9—H9118.8
C2—C1—H1A108.4C9—C10—C14120.6 (3)
C6—C1—H1A108.4C11—C10—C9117.9 (2)
C6—C1—C2111.36 (17)C11—C10—C14121.5 (2)
N2—C2—C1113.59 (18)C10—C11—H11118.5
N2—C2—H2107.1C10—C11—C12123.0 (2)
N2—C2—C3109.98 (18)C12—C11—H11118.5
C1—C2—H2107.1C7—C12—C15125.9 (2)
C3—C2—C1111.70 (18)C11—C12—C7117.7 (2)
C3—C2—H2107.1C11—C12—C15116.5 (2)
C2—C3—H3A109.1C8—C13—H13A109.5
C2—C3—H3B109.1C8—C13—H13B109.5
C2—C3—C4112.32 (19)C8—C13—H13C109.5
H3A—C3—H3B107.9H13A—C13—H13B109.5
C4—C3—H3A109.1H13A—C13—H13C109.5
C4—C3—H3B109.1H13B—C13—H13C109.5
C3—C4—H4A109.4C10—C14—H14A109.5
C3—C4—H4B109.4C10—C14—H14B109.5
C3—C4—C5111.02 (19)C10—C14—H14C109.5
H4A—C4—H4B108.0H14A—C14—H14B109.5
C5—C4—H4A109.4H14A—C14—H14C109.5
C5—C4—H4B109.4H14B—C14—H14C109.5
C4—C5—H5A109.5C12—C15—H15A109.5
C4—C5—H5B109.5C12—C15—H15B109.5
H5A—C5—H5B108.1C12—C15—H15C109.5
C6—C5—C4110.51 (19)H15A—C15—H15B109.5
C6—C5—H5A109.5H15A—C15—H15C109.5
C6—C5—H5B109.5H15B—C15—H15C109.5
S1—N1—C1—C2−156.04 (17)C2—C1—C6—C555.2 (2)
S1—N1—C1—C680.9 (2)C2—C3—C4—C5−55.0 (3)
S1—C7—C8—C9177.22 (17)C3—C4—C5—C656.8 (3)
S1—C7—C8—C13−0.7 (3)C4—C5—C6—C1−57.3 (3)
S1—C7—C12—C11−175.90 (18)C6—C1—C2—N2−177.74 (19)
S1—C7—C12—C154.4 (3)C6—C1—C2—C3−52.6 (2)
O1—S1—N1—C1−46.1 (2)C7—S1—N1—C170.4 (2)
O1—S1—C7—C8−173.93 (17)C7—C8—C9—C10−1.4 (3)
O1—S1—C7—C124.7 (2)C8—C7—C12—C112.7 (3)
O2—S1—N1—C1−174.73 (18)C8—C7—C12—C15−177.0 (2)
O2—S1—C7—C8−44.7 (2)C8—C9—C10—C112.8 (4)
O2—S1—C7—C12133.97 (19)C8—C9—C10—C14−176.1 (2)
N1—S1—C7—C868.36 (19)C9—C10—C11—C12−1.4 (4)
N1—S1—C7—C12−112.99 (19)C10—C11—C12—C7−1.3 (4)
N1—C1—C2—N257.9 (2)C10—C11—C12—C15178.4 (2)
N1—C1—C2—C3−176.97 (18)C12—C7—C8—C9−1.5 (3)
N1—C1—C6—C5175.8 (2)C12—C7—C8—C13−179.4 (2)
N2—C2—C3—C4179.90 (18)C13—C8—C9—C10176.7 (2)
C1—C2—C3—C452.8 (3)C14—C10—C11—C12177.4 (2)
D—H···AD—HH···AD···AD—H···A
N2—H2A···N10.89 (3)2.43 (3)2.877 (3)111 (2)
N1—H1···N2i0.79 (3)2.14 (3)2.921 (3)170 (3)
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Journal:  Org Lett       Date:  2014-04-24       Impact factor: 6.005

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Journal:  J Am Chem Soc       Date:  2006-06-07       Impact factor: 15.419

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Journal:  J Org Chem       Date:  2015-05-27       Impact factor: 4.354

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Journal:  J Am Chem Soc       Date:  2008-04-04       Impact factor: 15.419

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Journal:  Acc Chem Res       Date:  2008-07-01       Impact factor: 22.384

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Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

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Journal:  Acta Crystallogr A Found Adv       Date:  2015-01-01       Impact factor: 2.290

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