Literature DB >> 26867951

Gene Insertion Into Genomic Safe Harbors for Human Gene Therapy.

Eirini P Papapetrou1,2,3, Axel Schambach4,5.   

Abstract

Genomic safe harbors (GSHs) are sites in the genome able to accommodate the integration of new genetic material in a manner that ensures that the newly inserted genetic elements: (i) function predictably and (ii) do not cause alterations of the host genome posing a risk to the host cell or organism. GSHs are thus ideal sites for transgene insertion whose use can empower functional genetics studies in basic research and therapeutic applications in human gene therapy. Currently, no fully validated GSHs exist in the human genome. Here, we review our formerly proposed GSH criteria and discuss additional considerations on extending these criteria, on strategies for the identification and validation of GSHs, as well as future prospects on GSH targeting for therapeutic applications. In view of recent advances in genome biology, gene targeting technologies, and regenerative medicine, gene insertion into GSHs can potentially catalyze nearly all applications in human gene therapy.

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Year:  2016        PMID: 26867951      PMCID: PMC4886940          DOI: 10.1038/mt.2016.38

Source DB:  PubMed          Journal:  Mol Ther        ISSN: 1525-0016            Impact factor:   11.454


  71 in total

1.  Residual undifferentiated cells during differentiation of induced pluripotent stem cells in vitro and in vivo.

Authors:  Wei Fu; Shu Jun Wang; Guang Dong Zhou; Wei Liu; Yilin Cao; Wen Jie Zhang
Journal:  Stem Cells Dev       Date:  2011-07-26       Impact factor: 3.272

Review 2.  Safe harbours for the integration of new DNA in the human genome.

Authors:  Michel Sadelain; Eirini P Papapetrou; Frederic D Bushman
Journal:  Nat Rev Cancer       Date:  2011-12-01       Impact factor: 60.716

3.  Safeguarding nonhuman primate iPS cells with suicide genes.

Authors:  Bonan Zhong; Korashon L Watts; Jennifer L Gori; Martin E Wohlfahrt; Joerg Enssle; Jennifer E Adair; Hans-Peter Kiem
Journal:  Mol Ther       Date:  2011-05-17       Impact factor: 11.454

4.  Ribosomal DNA integrating rAAV-rDNA vectors allow for stable transgene expression.

Authors:  Leszek Lisowski; Ashley Lau; Zhongya Wang; Yue Zhang; Feijie Zhang; Markus Grompe; Mark A Kay
Journal:  Mol Ther       Date:  2012-09-18       Impact factor: 11.454

5.  Hematopoietic stem cell gene therapy for adenosine deaminase-deficient severe combined immunodeficiency leads to long-term immunological recovery and metabolic correction.

Authors:  H Bobby Gaspar; Samantha Cooray; Kimberly C Gilmour; Kathryn L Parsley; Fang Zhang; Stuart Adams; Emma Bjorkegren; Jinhua Bayford; Lucinda Brown; E Graham Davies; Paul Veys; Lynette Fairbanks; Victoria Bordon; Theoni Petropoulou; Theoni Petropolou; Christine Kinnon; Adrian J Thrasher
Journal:  Sci Transl Med       Date:  2011-08-24       Impact factor: 17.956

6.  Spatial partitioning of the regulatory landscape of the X-inactivation centre.

Authors:  Elphège P Nora; Bryan R Lajoie; Edda G Schulz; Luca Giorgetti; Ikuhiro Okamoto; Nicolas Servant; Tristan Piolot; Nynke L van Berkum; Johannes Meisig; John Sedat; Joost Gribnau; Emmanuel Barillot; Nils Blüthgen; Job Dekker; Edith Heard
Journal:  Nature       Date:  2012-04-11       Impact factor: 49.962

7.  Site-specific integration and tailoring of cassette design for sustainable gene transfer.

Authors:  Angelo Lombardo; Daniela Cesana; Pietro Genovese; Bruno Di Stefano; Elena Provasi; Daniele F Colombo; Margherita Neri; Zulma Magnani; Alessio Cantore; Pietro Lo Riso; Martina Damo; Oscar M Pello; Michael C Holmes; Philip D Gregory; Angela Gritti; Vania Broccoli; Chiara Bonini; Luigi Naldini
Journal:  Nat Methods       Date:  2011-08-21       Impact factor: 28.547

8.  A systematic survey of loss-of-function variants in human protein-coding genes.

Authors:  Daniel G MacArthur; Suganthi Balasubramanian; Adam Frankish; Ni Huang; James Morris; Klaudia Walter; Luke Jostins; Lukas Habegger; Joseph K Pickrell; Stephen B Montgomery; Cornelis A Albers; Zhengdong D Zhang; Donald F Conrad; Gerton Lunter; Hancheng Zheng; Qasim Ayub; Mark A DePristo; Eric Banks; Min Hu; Robert E Handsaker; Jeffrey A Rosenfeld; Menachem Fromer; Mike Jin; Xinmeng Jasmine Mu; Ekta Khurana; Kai Ye; Mike Kay; Gary Ian Saunders; Marie-Marthe Suner; Toby Hunt; If H A Barnes; Clara Amid; Denise R Carvalho-Silva; Alexandra H Bignell; Catherine Snow; Bryndis Yngvadottir; Suzannah Bumpstead; David N Cooper; Yali Xue; Irene Gallego Romero; Jun Wang; Yingrui Li; Richard A Gibbs; Steven A McCarroll; Emmanouil T Dermitzakis; Jonathan K Pritchard; Jeffrey C Barrett; Jennifer Harrow; Matthew E Hurles; Mark B Gerstein; Chris Tyler-Smith
Journal:  Science       Date:  2012-02-17       Impact factor: 47.728

9.  Efficient recombinase-mediated cassette exchange at the AAVS1 locus in human embryonic stem cells using baculoviral vectors.

Authors:  Chrishan J A Ramachandra; Mohammad Shahbazi; Timothy W X Kwang; Yukti Choudhury; Xiao Ying Bak; Jing Yang; Shu Wang
Journal:  Nucleic Acids Res       Date:  2011-06-17       Impact factor: 16.971

10.  Topological domains in mammalian genomes identified by analysis of chromatin interactions.

Authors:  Jesse R Dixon; Siddarth Selvaraj; Feng Yue; Audrey Kim; Yan Li; Yin Shen; Ming Hu; Jun S Liu; Bing Ren
Journal:  Nature       Date:  2012-04-11       Impact factor: 49.962

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  69 in total

1.  Rhesus iPSC Safe Harbor Gene-Editing Platform for Stable Expression of Transgenes in Differentiated Cells of All Germ Layers.

Authors:  So Gun Hong; Ravi Chandra Yada; Kyujoo Choi; Arnaud Carpentier; T Jake Liang; Randall K Merling; Colin L Sweeney; Harry L Malech; Moonjung Jung; Marcus A F Corat; Aisha A AlJanahi; Yongshun Lin; Huimin Liu; Ilker Tunc; Xujing Wang; Maryknoll Palisoc; Stefania Pittaluga; Manfred Boehm; Thomas Winkler; Jizhong Zou; Cynthia E Dunbar
Journal:  Mol Ther       Date:  2017-01-04       Impact factor: 11.454

2.  Detailed comparison of retroviral vectors and promoter configurations for stable and high transgene expression in human induced pluripotent stem cells.

Authors:  D Hoffmann; J W Schott; F K Geis; L Lange; F-J Müller; D Lenz; D Zychlinski; D Steinemann; M Morgan; T Moritz; A Schambach
Journal:  Gene Ther       Date:  2017-04-20       Impact factor: 5.250

3.  * CRISPR-Based Epigenome Editing of Cytokine Receptors for the Promotion of Cell Survival and Tissue Deposition in Inflammatory Environments.

Authors:  Niloofar Farhang; Jonathan M Brunger; Joshua D Stover; Pratiksha I Thakore; Brandon Lawrence; Farshid Guilak; Charles A Gersbach; Lori A Setton; Robby D Bowles
Journal:  Tissue Eng Part A       Date:  2017-02-28       Impact factor: 3.845

4.  Differential Transgene Silencing of Myeloid-Specific Promoters in the AAVS1 Safe Harbor Locus of Induced Pluripotent Stem Cell-Derived Myeloid Cells.

Authors:  Denise Klatt; Erica Cheng; Dirk Hoffmann; Giorgia Santilli; Adrian J Thrasher; Christian Brendel; Axel Schambach
Journal:  Hum Gene Ther       Date:  2020-01-23       Impact factor: 5.695

Review 5.  Towards systems tissue engineering: Elucidating the dynamics, spatial coordination, and individual cells driving emergent behaviors.

Authors:  Matthew S Hall; Joseph T Decker; Lonnie D Shea
Journal:  Biomaterials       Date:  2020-06-14       Impact factor: 12.479

6.  Highly efficient CRISPR-targeting of the murine Hipp11 intergenic region supports inducible human transgene expression.

Authors:  Jill Browning; Michael Rooney; Emily Hams; Satoru Takahashi; Seiya Mizuno; Fumihiro Sugiyama; Padraic G Fallon; Vincent P Kelly
Journal:  Mol Biol Rep       Date:  2019-12-06       Impact factor: 2.316

7.  New Human Chromosomal Sites with "Safe Harbor" Potential for Targeted Transgene Insertion.

Authors:  Stefan Pellenz; Michael Phelps; Weiliang Tang; Blake T Hovde; Ryan B Sinit; Wenqing Fu; Hui Li; Eleanor Chen; Raymond J Monnat
Journal:  Hum Gene Ther       Date:  2019-03-28       Impact factor: 5.695

8.  Enhanced CAR T-cell engineering using non-viral Sleeping Beauty transposition from minicircle vectors.

Authors:  R Monjezi; C Miskey; T Gogishvili; M Schleef; M Schmeer; H Einsele; Z Ivics; M Hudecek
Journal:  Leukemia       Date:  2016-06-24       Impact factor: 11.528

9.  Building with intent: technologies and principles for engineering mammalian cell-based therapies to sense and respond.

Authors:  Joseph J Muldoon; Patrick S Donahue; Taylor B Dolberg; Joshua N Leonard
Journal:  Curr Opin Biomed Eng       Date:  2017-10-18

Review 10.  Implementing genome-driven personalized cardiology in clinical practice.

Authors:  Ares Pasipoularides
Journal:  J Mol Cell Cardiol       Date:  2018-01-16       Impact factor: 5.000

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