| Literature DB >> 26867572 |
Paul M Bartley1, Clare Hamilton2, Cari Wilson3, Elisabeth A Innes4, Frank Katzer5.
Abstract
BACKGROUND: This study aimed to determine the prevalence of Babesia species DNA in lung exudate samples collected from red foxes (Vulpes vulpes) from across Great Britain. Babesia are small piroplasmid parasites which are mainly transmitted through the bite of infected ticks of the family Ixodidae. Babesia can cause potentially fatal disease in a wide-range of mammalian species including humans, dogs and cattle, making them of significant economic importance to both the medical and veterinary fields.Entities:
Mesh:
Substances:
Year: 2016 PMID: 26867572 PMCID: PMC4751633 DOI: 10.1186/s13071-016-1364-1
Source DB: PubMed Journal: Parasit Vectors ISSN: 1756-3305 Impact factor: 3.876
Primer names, specificity and sequences used for the detection of Babesia DNA in fox lung exudate samples
| Primer Name | Specificitya | Sequence (5’ – 3’) | Reference |
|---|---|---|---|
| BT1-F | Universal | GGTTGATCCTGCCAGTAGT | [ |
| BTH-1R | Universal | TTGCGACCATACTCCCCCCA | |
| BTH-1 F | Universal | CCTGMGARACGGCTACCACATCT | |
| BT1-R | Universal | GCCTGCTGCCTTCCTTA | |
| BTFox1F |
| AGTTATAAGCTTTTATACAGC | Developed in the study |
| BTFox1R |
| CACTCTAGTTTTCTCAAAGTAAAATA | |
| BT-Outer-R |
| GGAAACCTTGTTACGACTTCTC | |
| BT-Inner-R |
| TTCTCCTTCCTTTAAGTGATAAG | |
| 600-F |
| AGTTAAGAAGCTCGTAGTTG | |
| 1200-F |
| AGGATTGACAGATTGATAGC |
aAll primers were designed against the 18S rRNA gene
Annealing temperatures and amplicon sizes of nested PCR reactions used for the detection of Babesia annae DNA in fox lung exudate samples
| Primers | Amplicon size (bp) | Annealing Temp (°C) |
|---|---|---|
| BT1-F and BTH-1R | 1073 | 55 |
| BT1-F and BT1-R | 408 | 60 |
| BTFox1F and BTFox1R | 655 | 52 |
| BT1-F and BT-Outer-R | 1737 | 55 |
| BT1-F and BT-Inner-R | 1717 | 49 |
Prevalence of Babesia annae DNA in red foxes (Vulpes vulpes) from across Great Britain
| Region | No tested | No Positive | Prevalence (%) | 95 % CI | Gender | No / No Positive | % Prevalence | 95 % CI |
|---|---|---|---|---|---|---|---|---|
| Scotland | 80 | 6 | 7.5* | 1.7–13.3 % | Male | 48 / 5 | 10.4 | 1.8–19.0 % |
| Female | 32 / 1 | 3.1 | 0.00–9.2 % | |||||
| Wales | 12 | 0 | 0 | - | Male | 5 / 0 | 0 | - |
| Female | 7 / 0 | 0 | - | |||||
| Northern (England) | 34 | 8 | 23.5 | 9.3–37.8 % | Male | 20 / 6 | 30 | 9.9–50.1 % |
| Female | 14 / 2 | 14.2 | 0.0–32.6 % | |||||
| Central (England) | 49 | 18 | 36.7** | 23.2–50.2 % | Male | 22 / 10 | 45 | 24.6–66.3 % |
| Female | 27 / 8 | 29.6 | 12.4–46.9 % | |||||
| Southern (England) | 78 | 11 | 14.1 | 6.4–21.8 % | Male | 45 / 8 | 17.8 | 6.6–28.9 % |
| Female | 9 / 3 | 9.1 | 0.0–18.9 % | |||||
| Total | Male | 140 / 29 | 20.7 | 14.0–27.4 % | ||||
| Female | 113 / 14 | 12.4 | 6.3–18.5 % |
N Number, CI Confidence interval
* Significantly lower prevalence than nation average (p = 0.045)
** Significantly higher prevalence than national average (p = 0.003)
Fig. 1Phylogenetic analysis on 18S rRNA gene. Phylogenetic tree showing maximum likelihood approximation of the standard likelihood ratio test scores. A maximum likelihood approximation of the standard likelihood ratio test score of 0 indicating that no base pair substitutions were observed between AY534602, EU583387, AF188001 and KT580785. The phylogenetic analysis places KT580785 in clade VIII (microti group according to the nomenclature suggested by Lack and colleagues [26]).