Literature DB >> 26866328

Recent advances in globin research using genome-wide association studies and gene editing.

Stuart H Orkin1.   

Abstract

A long-sought goal in the hemoglobin field has been an improved understanding of the mechanisms that regulate the switch from fetal (HbF) to adult (HbA) hemoglobin during development. With such knowledge, the hope is that strategies for directed reactivation of HbF in adults could be devised as an approach to therapy for the β-hemoglobinopathies thalassemia and sickle cell disease. Recent genome-wide association studies (GWAS) led to identification of three loci (BCL11A, HBS1L-MYB, and the β-globin cluster itself) in which natural genetic variation is correlated with different HbF levels in populations. Here, the central role of BCL11A in control of HbF is reviewed from the perspective of how findings may be translated to gene therapy in the not-too-distant future. This summary traces the evolution of recent studies from the initial recognition of BCL11A through GWAS to identification of critical sequences in an enhancer required for its erythroid-specific expression, thereby highlighting an Achilles heel for genome editing.
© 2016 New York Academy of Sciences.

Entities:  

Keywords:  BCL11A; CRISPR; enhancer; gene editing; thalassemia

Mesh:

Substances:

Year:  2016        PMID: 26866328      PMCID: PMC4870148          DOI: 10.1111/nyas.13001

Source DB:  PubMed          Journal:  Ann N Y Acad Sci        ISSN: 0077-8923            Impact factor:   5.691


  22 in total

1.  BCL11A deletions result in fetal hemoglobin persistence and neurodevelopmental alterations.

Authors:  Anindita Basak; Miroslava Hancarova; Jacob C Ulirsch; Tugce B Balci; Marie Trkova; Michal Pelisek; Marketa Vlckova; Katerina Muzikova; Jaroslav Cermak; Jan Trka; David A Dyment; Stuart H Orkin; Mark J Daly; Zdenek Sedlacek; Vijay G Sankaran
Journal:  J Clin Invest       Date:  2015-05-04       Impact factor: 14.808

2.  Characterization of genomic deletion efficiency mediated by clustered regularly interspaced short palindromic repeats (CRISPR)/Cas9 nuclease system in mammalian cells.

Authors:  Matthew C Canver; Daniel E Bauer; Abhishek Dass; Yvette Y Yien; Jacky Chung; Takeshi Masuda; Takahiro Maeda; Barry H Paw; Stuart H Orkin
Journal:  J Biol Chem       Date:  2014-06-06       Impact factor: 5.157

3.  Genetics of human hemoglobins: an overview.

Authors:  A G Motulsky
Journal:  Ann N Y Acad Sci       Date:  1974-11-29       Impact factor: 5.691

4.  Use of haplotype analysis in the beta-globin gene cluster to discover beta-thalassemia mutations.

Authors:  H H Kazazian; S E Antonarakis; T Cheng; C D Boehm; P G Waber
Journal:  Prog Clin Biol Res       Date:  1983

5.  Linkage of beta-thalassaemia mutations and beta-globin gene polymorphisms with DNA polymorphisms in human beta-globin gene cluster.

Authors:  S H Orkin; H H Kazazian; S E Antonarakis; S C Goff; C D Boehm; J P Sexton; P G Waber; P J Giardina
Journal:  Nature       Date:  1982-04-15       Impact factor: 49.962

6.  miRNA-embedded shRNAs for Lineage-specific BCL11A Knockdown and Hemoglobin F Induction.

Authors:  Swaroopa Guda; Christian Brendel; Raffaele Renella; Peng Du; Daniel E Bauer; Matthew C Canver; Jennifer K Grenier; Andrew W Grimson; Sophia C Kamran; James Thornton; Helen de Boer; David E Root; Michael D Milsom; Stuart H Orkin; Richard I Gregory; David A Williams
Journal:  Mol Ther       Date:  2015-06-17       Impact factor: 11.454

7.  Bcl11a is essential for normal lymphoid development.

Authors:  Pentao Liu; Jonathan R Keller; Mariaestela Ortiz; Lino Tessarollo; Rivka A Rachel; Takuro Nakamura; Nancy A Jenkins; Neal G Copeland
Journal:  Nat Immunol       Date:  2003-04-28       Impact factor: 25.606

8.  Cloning of cDNA for the major DNA-binding protein of the erythroid lineage through expression in mammalian cells.

Authors:  S F Tsai; D I Martin; L I Zon; A D D'Andrea; G G Wong; S H Orkin
Journal:  Nature       Date:  1989-06-08       Impact factor: 49.962

9.  BCL11A enhancer dissection by Cas9-mediated in situ saturating mutagenesis.

Authors:  Matthew C Canver; Elenoe C Smith; Falak Sher; Luca Pinello; Neville E Sanjana; Ophir Shalem; Diane D Chen; Patrick G Schupp; Divya S Vinjamur; Sara P Garcia; Sidinh Luc; Ryo Kurita; Yukio Nakamura; Yuko Fujiwara; Takahiro Maeda; Guo-Cheng Yuan; Feng Zhang; Stuart H Orkin; Daniel E Bauer
Journal:  Nature       Date:  2015-09-16       Impact factor: 49.962

10.  Functional footprinting of regulatory DNA.

Authors:  Jeff Vierstra; Andreas Reik; Kai-Hsin Chang; Sandra Stehling-Sun; Yuanyue Zhou; Sarah J Hinkley; David E Paschon; Lei Zhang; Nikoletta Psatha; Yuri R Bendana; Colleen M O'Neil; Alexander H Song; Andrea K Mich; Pei-Qi Liu; Gary Lee; Daniel E Bauer; Michael C Holmes; Stuart H Orkin; Thalia Papayannopoulou; George Stamatoyannopoulos; Edward J Rebar; Philip D Gregory; Fyodor D Urnov; John A Stamatoyannopoulos
Journal:  Nat Methods       Date:  2015-08-31       Impact factor: 28.547

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  6 in total

1.  Why societies?

Authors:  Daniel J DelloStritto
Journal:  J Clin Invest       Date:  2016-12-01       Impact factor: 14.808

Review 2.  Omics Studies in Hemoglobinopathies.

Authors:  Eleni Katsantoni
Journal:  Mol Diagn Ther       Date:  2019-04       Impact factor: 4.074

Review 3.  Pediatric sickle cell disease: past successes and future challenges.

Authors:  Emily Riehm Meier; Angeli Rampersad
Journal:  Pediatr Res       Date:  2016-10-05       Impact factor: 3.756

Review 4.  Regulation of hematopoietic development by ZBTB transcription factors.

Authors:  Takahiro Maeda
Journal:  Int J Hematol       Date:  2016-06-01       Impact factor: 2.490

Review 5.  An Expert Review of Pharmacogenomics of Sickle Cell Disease Therapeutics: Not Yet Ready for Global Precision Medicine.

Authors:  Khuthala Mnika; Gift D Pule; Collet Dandara; Ambroise Wonkam
Journal:  OMICS       Date:  2016-09-16

6.  LOVD-DASH: A comprehensive LOVD database coupled with diagnosis and an at-risk assessment system for hemoglobinopathies.

Authors:  Li Zhang; Qianqian Zhang; Yaohua Tang; Peikuan Cong; Yuhua Ye; Shiping Chen; Xinhua Zhang; Yan Chen; Baosheng Zhu; Wangwei Cai; Shaoke Chen; Ren Cai; Xiaoling Guo; Chonglin Zhang; Yuqiu Zhou; Jie Zou; Yanhui Liu; Biyan Chen; Shanhuo Yan; Yajun Chen; Yuehong Zhou; Hongmei Ding; Xiarong Li; Dianyu Chen; Jianmei Zhong; Xuan Shang; Xuanzhu Liu; Ming Qi; Xiangmin Xu
Journal:  Hum Mutat       Date:  2019-09-11       Impact factor: 4.878

  6 in total

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