Literature DB >> 26865631

A Highly Conserved Salt Bridge Stabilizes the Kinked Conformation of β2,3-Sheet Essential for Channel Function of P2X4 Receptors.

Wen-Shan Zhao1, Meng-Yang Sun1, Liang-Fei Sun2, Yan Liu2, Yang Yang2, Li-Dong Huang2, Ying-Zhe Fan3, Xiao-Yang Cheng2, Peng Cao4, You-Min Hu2, Lingyong Li5, Yun Tian6, Rui Wang7, Ye Yu8.   

Abstract

Significant progress has been made in understanding the roles of crucial residues/motifs in the channel function of P2X receptors during the pre-structure era. The recent structural determination of P2X receptors allows us to reevaluate the role of those residues/motifs. Residues Arg-309 and Asp-85 (rat P2X4 numbering) are highly conserved throughout the P2X family and were involved in loss-of-function polymorphism in human P2X receptors. Previous studies proposed that they participated in direct ATP binding. However, the crystal structure of P2X demonstrated that those two residues form an intersubunit salt bridge located far away from the ATP-binding site. Therefore, it is necessary to reevaluate the role of this salt bridge in P2X receptors. Here, we suggest the crucial role of this structural element both in protein stability and in channel gating rather than direct ATP interaction and channel assembly. Combining mutagenesis, charge swap, and disulfide cross-linking, we revealed the stringent requirement of this salt bridge in normal P2X4 channel function. This salt bridge may contribute to stabilizing the bending conformation of the β2,3-sheet that is structurally coupled with this salt bridge and the α2-helix. Strongly kinked β2,3 is essential for domain-domain interactions between head domain, dorsal fin domain, right flipper domain, and loop β7,8 in P2X4 receptors. Disulfide cross-linking with directions opposing or along the bending angle of the β2,3-sheet toward the α2-helix led to loss-of-function and gain-of-function of P2X4 receptors, respectively. Further insertion of amino acids with bulky side chains into the linker between the β2,3-sheet or the conformational change of the α2-helix, interfering with the kinked conformation of β2,3, led to loss-of-function of P2X4 receptors. All these findings provided new insights in understanding the contribution of the salt bridge between Asp-85 and Arg-309 and its structurally coupled β2,3-sheet to the function of P2X receptors.
© 2016 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  ATP; P2X receptors; conformational change; ion channel; protein expression; protein stability; salt bridge

Mesh:

Substances:

Year:  2016        PMID: 26865631      PMCID: PMC4825005          DOI: 10.1074/jbc.M115.711127

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  51 in total

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Authors: 
Journal:  J Biol Chem       Date:  2000-11-10       Impact factor: 5.157

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Journal:  Nat Med       Date:  2005-12-04       Impact factor: 53.440

3.  ADP-ribosylation at R125 gates the P2X7 ion channel by presenting a covalent ligand to its nucleotide binding site.

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4.  Agonist trapped in ATP-binding sites of the P2X2 receptor.

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Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-16       Impact factor: 11.205

5.  P2X1 and P2X3 receptors form stable trimers: a novel structural motif of ligand-gated ion channels.

Authors:  A Nicke; H G Bäumert; J Rettinger; A Eichele; G Lambrecht; E Mutschler; G Schmalzing
Journal:  EMBO J       Date:  1998-06-01       Impact factor: 11.598

6.  A state-dependent salt-bridge interaction exists across the β/α intersubunit interface of the GABAA receptor.

Authors:  Kurt T Laha; David A Wagner
Journal:  Mol Pharmacol       Date:  2011-01-05       Impact factor: 4.436

7.  Identification of amino acid residues contributing to the ATP-binding site of a purinergic P2X receptor.

Authors:  L H Jiang; F Rassendren; A Surprenant; R A North
Journal:  J Biol Chem       Date:  2000-11-03       Impact factor: 5.157

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9.  An Arg307 to Gln polymorphism within the ATP-binding site causes loss of function of the human P2X7 receptor.

Authors:  Ben J Gu; Ronald Sluyter; Kristen K Skarratt; Anne N Shemon; Lan-Phuong Dao-Ung; Stephen J Fuller; Julian A Barden; Alison L Clarke; Steven Petrou; James S Wiley
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Review 10.  P2X receptors: dawn of the post-structure era.

Authors:  Mark T Young
Journal:  Trends Biochem Sci       Date:  2009-10-15       Impact factor: 13.807

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  8 in total

1.  Intersubunit physical couplings fostered by the left flipper domain facilitate channel opening of P2X4 receptors.

Authors:  Jin Wang; Liang-Fei Sun; Wen-Wen Cui; Wen-Shan Zhao; Xue-Fei Ma; Bin Li; Yan Liu; Yang Yang; You-Min Hu; Li-Dong Huang; Xiao-Yang Cheng; Lingyong Li; Xiang-Yang Lu; Yun Tian; Ye Yu
Journal:  J Biol Chem       Date:  2017-03-16       Impact factor: 5.157

2.  Altered allostery of the left flipper domain underlies the weak ATP response of rat P2X5 receptors.

Authors:  Liang-Fei Sun; Yan Liu; Jin Wang; Li-Dong Huang; Yang Yang; Xiao-Yang Cheng; Ying-Zhe Fan; Michael X Zhu; Hong Liang; Yun Tian; Heng-Shan Wang; Chang-Run Guo; Ye Yu
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3.  Modulation of P2X4 pore closure by magnesium, potassium, and ATP.

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4.  The long β2,3-sheets encoded by redundant sequences play an integral role in the channel function of P2X7 receptors.

Authors:  Xue-Fei Ma; Ting-Ting Wang; Wen-Hui Wang; Li Guan; Chang-Run Guo; Xing-Hua Li; Yun-Tao Lei; Ying-Zhe Fan; Xiao-Na Yang; Motoyuki Hattori; Osamu Nureki; Michael X Zhu; Ye Yu; Yun Tian; Jin Wang
Journal:  J Biol Chem       Date:  2022-04-30       Impact factor: 5.486

Review 5.  Three Decades of Chloride Intracellular Channel Proteins: From Organelle to Organ Physiology.

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6.  PD-L1 Nanobody Competitively Inhibits the Formation of the PD-1/PD-L1 Complex: Comparative Molecular Dynamics Simulations.

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Journal:  Int J Mol Sci       Date:  2018-07-07       Impact factor: 5.923

7.  Dynamic recognition of naloxone, morphine and endomorphin1 in the same pocket of µ-opioid receptors.

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Journal:  Front Mol Biosci       Date:  2022-08-16

8.  Structural insights into the competitive inhibition of the ATP-gated P2X receptor channel.

Authors:  Go Kasuya; Toshiaki Yamaura; Xiao-Bo Ma; Ryoki Nakamura; Mizuki Takemoto; Hiromitsu Nagumo; Eiichi Tanaka; Naoshi Dohmae; Takanori Nakane; Ye Yu; Ryuichiro Ishitani; Osamu Matsuzaki; Motoyuki Hattori; Osamu Nureki
Journal:  Nat Commun       Date:  2017-10-12       Impact factor: 14.919

  8 in total

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