Literature DB >> 26863912

Updating Biodiversity Studies in Loricate Protists: The Case of the Tintinnids (Alveolata, Ciliophora, Spirotrichea).

Luciana F Santoferrara1, Charles Bachy2, Viviana A Alder3,4, Jun Gong5, Young-Ok Kim6, Alessandro Saccà7, Inácio D da Silva Neto8, Michaela C Strüder-Kypke9, Alan Warren10, Dapeng Xu11, Zhenzhen Yi12, Sabine Agatha13.   

Abstract

Species determination is crucial in biodiversity research. In tintinnids, identification is based almost exclusively on the lorica, despite its frequent intraspecific variability and interspecific similarity. We suggest updated procedures for identification and, depending on the aim of the study, further steps to obtain morphological, molecular, and ecological data. Our goal is to help improving the collection of information (e.g. species re-/descriptions and DNA barcodes) that is essential for generating a natural tintinnid classification and a reliable reference for environmental surveys. These suggestions are broadly useful for protistologists because they exemplify data integration, quality/effort compromise, and the need for scientific collaborations.
© 2016 The Author(s) Journal of Eukaryotic Microbiology © 2016 International Society of Protistologists.

Entities:  

Keywords:  DNA barcoding; ciliates; ecology; morphology; phylogeny; taxonomy

Mesh:

Substances:

Year:  2016        PMID: 26863912     DOI: 10.1111/jeu.12303

Source DB:  PubMed          Journal:  J Eukaryot Microbiol        ISSN: 1066-5234            Impact factor:   3.346


  7 in total

1.  DeSignate: detecting signature characters in gene sequence alignments for taxon diagnoses.

Authors:  Thomas Hütter; Maximilian H Ganser; Manuel Kocher; Merima Halkic; Sabine Agatha; Nikolaus Augsten
Journal:  BMC Bioinformatics       Date:  2020-04-20       Impact factor: 3.169

Review 2.  Beyond the "Code": A Guide to the Description and Documentation of Biodiversity in Ciliated Protists (Alveolata, Ciliophora).

Authors:  Alan Warren; David J Patterson; Micah Dunthorn; John C Clamp; Undine E M Achilles-Day; Erna Aescht; Saleh A Al-Farraj; Saleh Al-Quraishy; Khaled Al-Rasheid; Martin Carr; John G Day; Marc Dellinger; Hamed A El-Serehy; Yangbo Fan; Feng Gao; Shan Gao; Jun Gong; Renu Gupta; Xiaozhong Hu; Komal Kamra; Gaytha Langlois; Xiaofeng Lin; Diana Lipscomb; Christopher S Lobban; Pierangelo Luporini; Denis H Lynn; Honggang Ma; Miroslav Macek; Jacqueline Mackenzie-Dodds; Seema Makhija; Robert I Mansergh; Mercedes Martín-Cereceda; Nettie McMiller; David J S Montagnes; Svetlana Nikolaeva; Geoffrey Odhiambo Ong'ondo; Blanca Pérez-Uz; Jasmine Purushothaman; Pablo Quintela-Alonso; Johana Rotterová; Luciana Santoferrara; Chen Shao; Zhuo Shen; Xinlu Shi; Weibo Song; Thorsten Stoeck; Antonietta La Terza; Adriana Vallesi; Mei Wang; Thomas Weisse; Krzysztof Wiackowski; Lei Wu; Kuidong Xu; Zhenzhen Yi; Rebecca Zufall; Sabine Agatha
Journal:  J Eukaryot Microbiol       Date:  2017-02-15       Impact factor: 3.346

3.  Redescription of Tintinnopsis everta Kofoid and Campbell 1929 (Alveolata, Ciliophora, Tintinnina) Based on Taxonomic and Genetic Analyses-Discovery of a New Complex Ciliary Pattern.

Authors:  Michael S Gruber; Michaela Strüder-Kypke; Sabine Agatha
Journal:  J Eukaryot Microbiol       Date:  2018-01-31       Impact factor: 3.346

4.  Redescription of Antetintinnidium mucicola (Claparède and Lachmann, 1858) nov. gen., nov. comb. (Alveolata, Ciliophora, Tintinnina).

Authors:  Maximilian H Ganser; Sabine Agatha
Journal:  J Eukaryot Microbiol       Date:  2019-04-15       Impact factor: 3.346

5.  Three redescriptions in Tintinnopsis (Protista: Ciliophora: Tintinnina) from coastal waters of China, with cytology and phylogenetic analyses based on ribosomal RNA genes.

Authors:  Yang Bai; Rui Wang; Wen Song; Lifang Li; Luciana F Santoferrara; Xiaozhong Hu
Journal:  BMC Microbiol       Date:  2020-12-14       Impact factor: 3.605

6.  Integrative taxonomy and molecular phylogeny of three poorly known tintinnine ciliates, with the establishment of a new genus (Protista; Ciliophora; Oligotrichea).

Authors:  Rui Wang; Yang Bai; Tao Hu; Dapeng Xu; Toshikazu Suzuki; Xiaozhong Hu
Journal:  BMC Ecol Evol       Date:  2021-06-09

7.  Three rDNA Loci-Based Phylogenies of Tintinnid Ciliates (Ciliophora, Spirotrichea, Choreotrichida).

Authors:  Qianqian Zhang; Sabine Agatha; Wuchang Zhang; Jun Dong; Ying Yu; Nianzhi Jiao; Jun Gong
Journal:  J Eukaryot Microbiol       Date:  2016-08-30       Impact factor: 3.346

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.