| Literature DB >> 26862484 |
Alexander Varzari1, Igor V Deyneko2, Elena Tudor1, Svetlana Turcan3.
Abstract
BACKGROUND: Glutathione S-transferases (GSTM1, GSTT1, and GSTP1) and methylenetetrahydrofolate reductase (MTHFR) are important enzymes for protection against oxidative stress. In addition, MTHFR has an essential role in DNA synthesis, repair, and methylation. Their polymorphisms have been implicated in the pathogenesis of ulcerative colitis (UC). The aim of the present study was to investigate the role of selected polymorphisms in these genes in the development of UC in the Moldavian population.Entities:
Keywords: GST, Glutathione S-transferase; Genetic polymorphism; Glutathione S-transferases; HWE, Hardy–Weinberg equilibrium; IBD, Inflammatory bowel disease; MTHFR, Methylenetetrahydrofolate reductase; Methylenetetrahydrofolate reductase; Moldavian population; PCR, Polymerase chain reaction; RFLP, Restriction fragment length polymorphism; SAM, S-adenosyl methionine; SNP, Single nucleotide polymorphism; Susceptibility; UC, Ulcerative colitis; Ulcerative colitis; n, Total number
Year: 2015 PMID: 26862484 PMCID: PMC4707243 DOI: 10.1016/j.mgene.2015.12.002
Source DB: PubMed Journal: Meta Gene ISSN: 2214-5400
Characteristics of the study population.
| Characteristic | UC (n = 128) n (%) | Healthy controls (n = 136) n (%) |
|---|---|---|
| Sex | ||
| Female | 59 (46.1) | 52 (38.2) |
| Male | 69 (53.9) | 84 (61.8) |
| Smoking | ||
| Never | 98 (76.6) | NA |
| Former | 16 (12.5) | NA |
| Current | 14 (10.9) | 48 (35.3) |
| Age at recruitment, median ± S.D. (years) | 41.4 ± 13.7 | 45.9 ± 10.8 |
| Age at diagnosis, median ± S.D. (years) | 36.7 ± 13.4 | |
| Extent of disease | ||
| Distal colitis | 53 (41.4) | |
| Left-sided colitis | 39 (30.5) | |
| Pancolitis | 36 (28.1) | |
| Severity | ||
| Mild | 41 (32.0) | |
| Intermediate | 60 (46.9) | |
| Severe | 27 (21.1) | |
| Negative UC-related outcomes | ||
| Absent | 73 (57.9) | |
| Present | 53 (42.1) | |
| Relapse rate | ||
| Infrequent | 67 (53.2) | |
| Frequent | 59 (46.8) |
NA, not available.
Fig. 1Electrophoresis of the products of the multiple PCR. Presence of 267 and 434-bp fragments indicates GSTM1 and GSTT1 wild-type (non-null) genotypes, respectively. The 212-bp band corresponding to a fragment of the human albumin gene, which serves as a positive control for the PCR. Lane 5: molecular weight marker (GeneRuler 50 bp DNA Ladder, Thermo Fisher Scientific); lane 1: GSTM1 and GSTT1 non-null genotype; lane 2: GSTM1 null/GSTT1 non-null genotype; lane 3: GSTM1 non-null/GSTT1 null genotype; lane 4: negative PCR control.
Association tests for single polymorphisms.
| Polymorphism | Genotype/Allele | Controls n (%) | Cases n (%) | Model | p-value |
|---|---|---|---|---|---|
| CC | 70 (51.5) | 59 (46.1) | Codominant | 0.63 | |
| CT | 52 (38.2) | 55 (43) | Dominant | 0.35 | |
| TT | 14 (10.3) | 14 (10.9) | Recessive | 0.87 | |
| C | 192 (70.6) | 173 (67.6) | Overdominant | 0.39 | |
| T | 80 (29.4) | 83 (32.4) | Additive | 0.44 | |
| AA | 66 (48.5) | 52 (41.3) | Codominant | 0.27 | |
| AC | 59 (43.4) | 57 (45.2) | Dominant | 0.14 | |
| CC | 11 (8.1) | 17 (13.5) | Recessive | 0.27 | |
| A | 191 (70.2) | 161 (63.9) | Overdominant | 0.43 | |
| C | 81 (29.8) | 91 (36.1) | Additive | 0.11 | |
| AA | 60 (44.4) | 62 (49.2) | Codominant | 0.29 | |
| AG | 68 (50.4) | 53 (42.1) | Dominant | 0.42 | |
| GG | 7 (5.2) | 11 (8.7) | Recessive | 0.27 | |
| A | 188 (69.6) | 177 (70.2) | Overdominant | 0.18 | |
| G | 82 (30.4) | 75 (29.8) | Additive | 0.83 | |
| Present | 111 (81.6) | 108 (84.4) | 0.77 | ||
| Null | 25 (18.4) | 20 (15.6) | |||
| Present | 61 (44.9) | 52 (40.6) | 0.65 | ||
| Null | 75 (55.1) | 76 (59.4) |
The p-values were obtained from logistic regression with co-dominant, dominant, recessive, over-dominant and additive models, and adjusted for sex, age and current smoking status.
Pairwise genotype - genotype interaction effects on UC risk revealed by logistic regression under dominant, recessive and over-dominant genetic models. Only associations with a nominal p-value p < 0.05 are shown.
| 1st locus | Genotype | 2nd locus | Genotype | Controls n (%) | Cases n (%) | OR (95% CI) | p-value | p-Value corrected |
|---|---|---|---|---|---|---|---|---|
| CT | AC | 22 (16.2%) | 32 (25.4%) | 2.18 (1.12–4.21) | 0.019 | 0.171 | ||
| CT + TT | AC | 23 (16.9%) | 32 (25.4%) | 2.03 (1.06–3.89) | 0.03 | 0.27 | ||
| AA | AG | 32 (23.7%) | 17 (13.6%) | 0.45 (0.23–0.90) | 0.021 | 0.189 | ||
| AA | AG + GG | 34 (25.2%) | 21 (16.8%) | 0.51 (0.27–0.98) | 0.04 | 0.36 | ||
| AG | Present | 34 (25.2%) | 19 (15.1%) | 0.50 (0.26–0.98) | 0.039 | 0.234 |
OR, odds ratio; CI, confidence interval.
Adjusted for sex, age at investigation and smoking.
Effect of MTHFR polymorphism rs1801131 on severity of UC, analyzed by logistic regression.
| Genotype | Severity grade | Severity mean (s.e.) | LR coefficient (95% CI)a | p-Valuea | p-Value correcteda | ||
|---|---|---|---|---|---|---|---|
| 1. (n = 41) | 2. (n = 59) | 3. (n = 26) | |||||
| AA | 21 (51.2%) | 24 (40.7%) | 7 (26.9%) | 1.73 (0.1) | 0 (Reference) | 0.018 | 0.09 |
| AC | 13 (31.7%) | 28 (47.5%) | 16 (61.5%) | 2.05 (0.1) | 0.33 (0.10–0.56) | ||
| CC | 7 (17.1%) | 7 (11.9%) | 3 (11.5%) | 1.76 (0.18) | 0.04 (− 0.30–0.38) | ||
| AA | 21 (51.2%) | 24 (40.7%) | 7 (26.9%) | 1.73 (0.1) | 0 (Reference) | 0.022 | 0.11 |
| AC + CC | 20 (48.8%) | 35 (59.3%) | 19 (73.1%) | 1.99 (0.08) | 0.26 (0.04–0.48) | ||
| AA + AC | 1.9 (0.07) | 0 (Reference) | 0.43 | - | |||
| CC | 7 (17.1%) | 7 (11.9%) | 3 (11.5%) | 1.76 (0.18) | − 0.13 (− 0.46–0.19) | ||
| AA + CC | 28 (68.3%) | 31 (52.6%) | 10 (38.4%) | 1.74 ± 0.08 | 0 (Reference) | 0.0046 | 0.023 |
| AC | 13 (31.7%) | 28 (47.5%) | 16 (61.5%) | 2.05 ± 0.1 | 0.32 (0.10–0.54) | ||
1 = mild, 2 = moderate, 3 = severe.
aAdjusted for sex, age at investigation and smoking.
LR, logistic regression; CI, confidence interval.
p-values above 1.0 after Bonferroni correction are not shown.
Effect of MTHFR polymorphism rs1801133 on extent of UC, analyzed by logistic regression and Fisher exact test.
| Genotype | Distal colitis (n = 53) | Extended colitis | OR (95% CI) | p-Value log. Reg. | p-value log. reg. corrected | p-Value isher test | p-Value fisher test corrected |
|---|---|---|---|---|---|---|---|
| CC | 24 (45.3%) | 35 (46.7%) | 1 (Reference) | 0.008 | 0.040 | 0.0075 | 0.0375 |
| CT | 18 (34%) | 37 (49.3%) | 1.69 (0.71–4.02) | ||||
| TT | 11 (20.8) | 3 (4%) | 0.19 (0.04–0.83) | ||||
| CC | 24 (45.3%) | 35 (46.7%) | 1 (Reference) | 0.91 | - | > 0.9999 | - |
| CT + TT | 29 (54.7%) | 40 (53.3%) | 1.05 (0.48–2.28) | ||||
| CC + CT | 42 (79.3%) | 72 (96%) | 1 (Reference) | 0.0041 | 0.020 | 0.0037 | 0.0185 |
| TT | 11 (20.8) | 3 (4%) | 0.15 (0.04–0.63) | ||||
| CC + TT | 35 (66%) | 38 (50.7%) | 1 (Reference) | 0.05 | 0.25 | 0.0729 | 0.3645 |
| CT | 18 (34%) | 37 (49.3%) | 2.28 (1.00–5.21) |
OR, odds ratio; CI, confidence interval.
p-values above 1.0 after Bonferroni correction are not shown.
Left-sided UC + Pancolitis.
Adjusted for sex, age, at investigation and smoking.