| Literature DB >> 26862382 |
Kamyar Makvandi1, Nastaran Ranjbari2, Manoochehr Makvandi3, Ali Ashraf Teimori3, Niloofar Neisi3, Mojtaba Rasti1, Vida Alipour1, Mostafa Albokord1, Malek Kanani2, Ramezan Ahadi4, Ala Habibian3.
Abstract
BACKGROUND: Hepatitis B Virus (HBV) is responsible for chronic, acute, and fulminant hepatitis, which are prevalent worldwide. Chronic HBV may lead to cirrhosis and hepatocellular carcinoma. Several epidemiological studies have indicated that hepatitis B virus is involved in B-cell Hodgkin and Non-Hodgkin Lymphoma (NHL).Entities:
Keywords: Hepatitis B Virus; Hodgkin Disease; Polymerase Chain Reaction
Year: 2015 PMID: 26862382 PMCID: PMC4740896 DOI: 10.5812/jjm.25726
Source DB: PubMed Journal: Jundishapur J Microbiol ISSN: 2008-3645 Impact factor: 0.747
Sequences of Primer Pairs Used For Hepatitis B Virus Polymerase Chain Reaction Detection
| Primer Name | Nucleotide Sequence | Nucleotide Region |
|---|---|---|
|
| 5’-GAG TCT AGA CTC GTG GTG GAC TTC-3’ | 244 - 267 |
|
| 5’-CGT GGT GGA CTT CTC TCA ATT TTC-3’ | 668 - 691 |
|
| 5’-AAA TKG CAC TAG TAA ACT GAG CCA-3’ | 255 - 278 |
|
| 5’-GCC ARG AGA AAC GGR CTG AGG CCC-3’ | 648 - 671 |
The Profiles of Patients With Hepatitis B Virus Genotype Along With the Accession Numbers
| Isolate | Gender | Age | Hodgkin | Non-Hodgkin | Genotype | Blast Identity |
|---|---|---|---|---|---|---|
|
| F | 25 | + | -- | D1 | 98% |
|
| M | 29 | + | -- | D1 | 98% |
|
| M | 54 | -- | + | D1 | 98% |
|
| M | 65 | -- | + | D1 | 98% |
|
| F | 46 | -- | + | D1 | 98% |
|
| M | 53 | -- | + | D1 | 98% |
Figure 1.A Phylogenic Tree Constructed With the Neighbor Joining Method and 500 Replication Bootstrap Test Using the Partial Nucleotide Sequences of the S Region of Hepatitis B Virus, Genotype D1
Reference sequences were retrieved from Gen Bank with their accession numbers and origin. Bootstrap values are indicated in the tree roots.
Figure 2.Comparison of the Predicted Amino Acid Sequences of the S Region With Proteins of Accession Number AHW85404.1 to AHW85399.1 Recorded in Gen Bank
The consensus amino acid sequence of the reference D genotype is shown on the top. The partial sequences of all the six HBs genes in position 88 compared with the consensus sequence amino acid indicated a proline substitution with leucine. So far this type of mutation has not been reported in any HBV D genotype. The dots show conserved amino acid and the amino acid code indicates differences with the consensus amino acid.
The Frequency of Hodgkin and Non-Hodgkin Lymphoma
| Age Group, y | Males Amongst Hodgkin Patients | Females Amongst Hodgkin Patients | Males Amongst Non–Hodgkin Patients | Females Amongst Non-Hodgkin Patients | Total |
|---|---|---|---|---|---|
|
| - | 1 | 7 | - | 8 |
|
| 1 | 3 | - | 2 | 6 |
|
| 5 | 1 | - | 2 | 8 |
|
| 1 | - | - | 1 | 2 |
|
| - | - | 1 | 1 | 2 |
|
| - | - | 3 | 2 | 5 |
|
| - | - | 3 | 1 | 4 |
|
| - | - | 3 | 3 | 6 |
|
| 7 | 5 | 17 | 12 | 41 |
| 12 | 29 | ||||
Distributions of Hepatitis B Virus Infection Amongst the Hodgkin and Non-Hodgkin Patients
| Positive/Negative Cases | Males Amongst Hodgkin Patients | Females Amongst Hodgkin Patients | Males Amongst Non–Hodgkin Patients | Females Amongst Non-Hodgkin Patients | Total |
|---|---|---|---|---|---|
|
| 2 (16.66) | 1 (8.33) | 5 (17.24) | 2 (6.89) | 10 |
|
| 6 (50) | 3 (25) | 12 (41.37) | 10 (34.48) | 31 |
|
| 3/12 | 7/29 | 10/41 | ||
|
| 9/12 | 22/29 | 31/41 | ||
aData are presented as No. (%).