| Literature DB >> 26856914 |
Bilel Chalghaf, Sadok Chlif, Benjamin Mayala, Wissem Ghawar, Jihène Bettaieb, Myriam Harrabi, Goze Bertin Benie, Edwin Michael, Afif Ben Salah.
Abstract
Cutaneous leishmaniasis is a very complex disease involving multiple factors that limit its emergence and spatial distribution. Prediction of cutaneous leishmaniasis epidemics in Tunisia remains difficult because most of the epidemiological tools used so far are descriptive in nature and mainly focus on a time dimension. The purpose of this work is to predict the potential geographic distribution of Phlebotomus papatasi and zoonotic cutaneous leishmaniasis caused by Leishmania major in Tunisia using Grinnellian ecological niche modeling. We attempted to assess the importance of environmental factors influencing the potential distribution of P. papatasi and cutaneous leishmaniasis caused by L. major. Vectors were trapped in central Tunisia during the transmission season using CDC light traps (John W. Hock Co., Gainesville, FL). A global positioning system was used to record the geographical coordinates of vector occurrence points and households tested positive for cutaneous leishmaniasis caused by L. major. Nine environmental layers were used as predictor variables to model the P. papatasi geographical distribution and five variables were used to model the L. major potential distribution. Ecological niche modeling was used to relate known species' occurrence points to values of environmental factors for these same points to predict the presence of the species in unsampled regions based on the value of the predictor variables. Rainfall and temperature contributed the most as predictors for sand flies and human case distributions. Ecological niche modeling anticipated the current distribution of P. papatasi with the highest suitability for species occurrence in the central and southeastern part of Tunisian. Furthermore, our study demonstrated that governorates of Gafsa, Sidi Bouzid, and Kairouan are at highest epidemic risk. © The American Society of Tropical Medicine and Hygiene.Entities:
Mesh:
Year: 2016 PMID: 26856914 PMCID: PMC4824228 DOI: 10.4269/ajtmh.15-0345
Source DB: PubMed Journal: Am J Trop Med Hyg ISSN: 0002-9637 Impact factor: 2.345
Description and sources of environmental variables collected for the model
| Environmental variables | Abbreviation | Unit | Source |
|---|---|---|---|
| Annual mean temperature | BIO1 | °C | WorldClim |
| Mean diurnal range (mean of monthly (max temperature − min temperature)) | BIO2 | °C | WorldClim |
| Isothermality (BIO2/BIO7) (×100) | BIO3 | – | WorldClim |
| Temperature seasonality (standard deviation × 100) | BIO4 | °C | WorldClim |
| Max temperature of warmest month | BIO5 | °C | WorldClim |
| Min temperature of coldest month | BIO6 | °C | WorldClim |
| Temperature annual range (BIO5–BIO6) | BIO7 | °C | WorldClim |
| Mean temperature of wettest quarter | BIO8 | °C | WorldClim |
| Mean temperature of driest quarter | BIO9 | °C | WorldClim |
| Mean temperature of warmest quarter | BIO10 | °C | WorldClim |
| Mean temperature of coldest quarter | BIO11 | °C | WorldClim |
| Annual precipitation | BIO12 | mm | WorldClim |
| Precipitation of wettest month | BIO13 | mm | WorldClim |
| Precipitation of driest month | BIO14 | mm | WorldClim |
| Precipitation seasonality (coefficient of variation) | BIO15 | mm | WorldClim |
| Precipitation of wettest quarter | BIO16 | mm | WorldClim |
| Precipitation of driest quarter | BIO17 | mm | WorldClim |
| Precipitation of warmest quarter | BIO18 | mm | WorldClim |
| Precipitation of coldest quarter | BIO19 | mm | WorldClim |
| Elevation | Elevation | m | Derived from GTOPO30 |
| Slope | Slope | % | Derived from GTOPO30 |
| Aspect | Aspect | ° | Derived from GTOPO30 |
| Compound topographic index | CTI | – | Derived from GTOPO30 |
| Land cover | Land cover | – | European Space Agency |
Max = maximum; min = minimum.
Figure 1.Ecological niche modeling for Phlebotomus papatasi and Leishmania major in Tunisia using the MaxEnt model. (A) Continuous occurrence probability map of P. papatasi in Tunisia. Warm colors indicate high probability of occurrence and cool colors indicate low probability of occurrence; (B) continuous occurrence probability map of L. major in Tunisia. Warm colors indicate high probability of disease occurrence and cool colors indicate low probability of disease occurrence; (C) binary presence/absence map of P. papatasi in Tunisia. Values of P. papatasi presence probability below the cutoff threshold (0.235) were classified as absent and values of P. papatasi presence probability above the cutoff threshold (0.235) were classified as present. Yellow points indicate occurrence points of P. papatasi used to run the model. (D) Binary presence/absence map of L. major in Tunisia. Values of L. major presence probability below the cutoff threshold (0.217) were classified as absent and values of L. major presence probability above the cutoff threshold (0.217) were classified as present. Yellow points indicate occurrence points of cutaneous leishmaniasis cases caused by L. major used to run the model.
Predictor variables retained for modeling the geographical distribution of Phlebotomus papatasi and cutaneous leishmaniasis caused by Leishmania major
| Variable | Percent contribution | AUC without the variable | AUC with only the variable | |
|---|---|---|---|---|
| BIO17 | 26.30 | 0.84 | 0.75 | |
| BIO8 | 20.70 | 0.85 | 0.62 | |
| BIO5 | 14.00 | 0.85 | 0.67 | |
| Elevation | 10.90 | 0.85 | 0.63 | |
| Slope | 8.30 | 0.86 | 0.54 | |
| BIO10 | 5.20 | 0.85 | 0.78 | |
| BIO6 | 5.10 | 0.85 | 0.67 | |
| BIO15 | 5.00 | 0.86 | 0.76 | |
| BIO16 | 4.6 | 0.85 | 0.69 | |
| Cutaneous leishmaniasis caused by | BIO8 | 48.2 | 0.99 | 0.96 |
| BIO17 | 18.6 | 0.99 | 0.94 | |
| BIO5 | 15.6 | 0.99 | 0.88 | |
| Elevation | 10.1 | 0.99 | 0.81 | |
| BIO15 | 7.5 | 0.99 | 0.93 | |
| Slope | 5.6 | 0.99 | 0.74 | |
| BIO16 | 0.5 | 0.99 | 0.92 |
AUC = area under the curve. Predictor variables retained for modeling the geographical distribution of P. papatasi and cutaneous leishmaniasis cases caused by L. major with the percentage of the contribution in the final model, sample average, and the AUC or receiver operating characteristic with and without the variable considering the remaining variables.
Figure 2.Population at risk of cutaneous leishmaniasis caused by Leishmania major by district.
Population at risk for cutaneous leishmaniasis
| Governorate | Population at risk | Population | Cutaneous leishmaniasis cases 1998–2007 |
|---|---|---|---|
| Kairouan | 353,599 | 542,609 | 10,443 |
| Sidi Bouzid | 234,010 | 395,506 | 18,508 |
| Gafsa | 146,878 | 323,709 | 15,249 |
| Kebili | 49,860 | 143,218 | 3,617 |
| Mahdia | 44,805 | 377,853 | 2,306 |
| Sfax | 22,829 | 855,256 | 3,800 |
| Gabès | 21,183 | 342,630 | – |
| Tozeur | 8,617 | 97,526 | 3,014 |
| Zaghouan | 936 | 160,963 | 12 |
| Sousse | 1,611 | 544,413 | 642 |
| Total | 884,328 | 3,783,683 | 57,591 |
Total population according to the Tunisian National Census 2010 and cutaneous leishmaniasis cases reported to health authorities between 1998 and 2007 by governorate.