| Literature DB >> 26855776 |
Yongqian Duanmu1, Rihua Cong2, Shiyu Tao1, Jing Tian1, Haibo Dong1, Yuanshu Zhang1, Yingdong Ni1, Ruqian Zhao1.
Abstract
BACKGROUND: To understand the impact of feeding a high-concentrate diet to mid-lactating goats for a long time on liver metabolism and inflammatory response, two dimensional polyacrylamide gel electrophoresis (2-DE) and real-time PCR method were employed to detect proteins differentially expressed in liver and their mRNAs expression in goats fed high concentrate diet (HC) or low concentrate diet (LC). Twelve lactating dairy goats were randomly assigned to either a HC diet group (65 % concentrate of dry matter; n = 6) or a LC diet group (35 % concentrate of dry matter; n = 6) for 10 wk.Entities:
Keywords: High concentrate diet; Lactating goats; Liver; Mitochondria; Proteomics
Year: 2016 PMID: 26855776 PMCID: PMC4744397 DOI: 10.1186/s40104-016-0065-0
Source DB: PubMed Journal: J Anim Sci Biotechnol ISSN: 1674-9782
The primer sequence of the target gene
| Target genes | Primer | Primer sequence (5'→3') | Product length, bp | Accession No. |
|---|---|---|---|---|
|
| Forward | CCAGTGCAGGTCCTCA | 248 | NM_001285550.1 |
| Reverse | AGCGTTGCCAGTCTTT | |||
|
| Forward | CCTGGAGAACAAAGAAGC | 116 | NM_174049.2 |
| Reverse | TGCCCGACCTGTAGAA | |||
|
| Forward | CAACGGACCGACAACT | 128 | XM_005699318.1 |
| Reverse | GATTTAGATTATTCAGCCAC | |||
|
| Forward | ACACGGGCTCTTCTGG | 168 | NM_001285732.1 |
| Reverse | CCTTTGCTAACGGGAC | |||
|
| Forward | CCAACTTCCCTCTGCT | 125 | BC102540.1 |
| Reverse | CCTGGCTTCTTCTATTTT | |||
|
| Forward | GGCTCCTCATCTCACT | 135 | JF412686.1 |
| Reverse | ATCACTGTCCTTCCCT | |||
|
| Forward | GGAGGCAGACCCATTT | 153 | XM_005690874.1 |
| Reverse | GTCACAACCCACCACATT | |||
|
| Forward | AAAAGCAGGGTGGTCG | 126 | XM_005684985.1 |
| Reverse | GCTCCTCCTTCAGTGTT | |||
|
| Forward | ATGAAGTCGCACCACG | 117 | GAAI01003433.1 |
| Reverse | AGGGTTATGGAATAGGGTA | |||
|
| Forward | CTGGCTTGGGAGATTG | 134 | NM_001144097.1 |
| Reverse | AGTGAGGGTAAGGGATT | |||
|
| Forward | CATCCTGCGTCTGGACCTGG | 121 | AF540564.1 |
| Reverse | TTCCTTGATGTCACGGACGATTT | |||
|
| Forward | TAATGCCCATCTGCCTAC | 162 | XM_004015111.1 |
| Reverse | CGCCCTCATAGTGTTTCA | |||
|
| Forward | CAAGTAACAAGCCGGTAGCCC | 138 | XM_004014566.1 |
| Reverse | CCTGAAGAGGACCTGCGAGTAG | |||
|
| Forward | CAAGTAACAAGCCGGTAGCCC | 173 | AF276985.1 |
| Reverse | CCTGAAGAGGACCTGCGAGTAG | |||
|
| Forward | GAAGAGCTGCACCCAACA | 172 | D63351.1 |
| Reverse | CAGGTCATCATCACGGAAG | |||
|
| Forward | CCGTTCAGTGTATGGTTGCC | 239 | NM_001077209.1 |
| Reverse | TGCTTCGGGTCGGTGTT | |||
|
| Forward | GTTTCCACAAGAGCCGTAA | 195 | JQ342090.1 |
| Reverse | TGTTCAGAAGGCGATAGAGT | |||
|
| Forward | ACAAGCCAATGAAGAAAGAG | 98 | JQ308783.1 |
| Reverse | GAGGCGAGTCCAGAACC | |||
|
| Forward | ACTACTTGCCACCAAATACACC | 90 | XM_005696422.1 |
| Reverse | TCAAATGCAGGGAAATAACG | |||
|
| Forward | AGACCTCACGCTGTACCAGTC | 80 | AF186248.1 |
| Reverse | CCTTCACATAGTCCTCCTTGC | |||
|
| Forward | GCCATCCTTCGGTACATCG | 90 | AF249588.1 |
| Reverse | GCCAAGCGGACATCCATAA | |||
|
| Forward | CATCGGCACCCTCTACCT | 197 | KP662714.1 |
| Reverse | AGGCTAACGTATGTGGGT | |||
|
| Forward | GTAGAAACGGTCTGAACT | 112 | KP662714.1 |
| Reverse | TTACTGTGAGGGATGGGT | |||
|
| Forward | TACTTAATACCTCCGTCCTC | 175 | KP662714.1 |
| Reverse | GAAATTGTGAATGGTGCTT | |||
|
| Forward | TCACAGCAGGACACTTAC | 173 | KP662714.1 |
| Reverse | GTATAGGCTGACTAGGAGA | |||
|
| Forward | CACATCGACATGACTTAC | 102 | KP662714.1 |
| Reverse | AGTTCTGGGTTGTGGTAG | |||
|
| Forward | GGGTCATCATCTCTGCACCT | 180 | HM043737.1 |
| Reverse | GGTCATAAGTCCCTCCACGA |
Fig. 1Differentially expressed proteins in liver of dairy goats fed HC and LC by two-dimensional gel electrophoresis analysis. The differentially expressed proteins between LC and HC goats were spotted and numbered. pI, isoelectric point; Mr, molecular mass; n = 4/group
Differentially expressed proteins in liver of HC and LC groups identified by two-dimensional gel electrophoresis analysis and MALDI-TOF-MSa,b
| Spot number | Protein name | Accession number | Molecular weight, kDa | PI | Protein expression |
|---|---|---|---|---|---|
| Oxidative stress (4) | |||||
| 1 | Regucalcin (RNG) | gi|195972815 | 33,956 | 5.42 | Down |
| 7 | Superoxide dismutase [Cu-Zn] (SOD1) | gi|27807109 | 15,844 | 5.85 | Down |
| 5 | Glutathione S-transferase A1 (GSTA1) | gi|118151372 | 25,549 | 8.66 | Down |
| 17 | Protein disulfide-isomerase A3 precursor (PDIA3) | gi|148230374 | 57,293 | 6.38 | Down |
| Mitochondrial function (6) | |||||
| 3 | Glutamate dehydrogenase 1 (GLUD1) | gi|347300243 | 61,668 | 8.03 | Up |
| 6 | ATP synthase subunit beta (ATPSβ) | gi|28461221 | 56,249 | 5.15 | Down |
| 8 | Aldehyde dehydrogenase (ALDH) | gi|115496214 | 57,073 | 7.55 | Up |
| 10 | Cytochrom c oxidase subunit Via (COX6A1) | gi|162817 | 9, 501 | 6.13 | Down |
| 13 | 60 kDa heat shock protein (HSP60) | gi|262205483 | 61,110 | 5.71 | Down |
| 18 | 4-hydroxy-2-oxoglutarate aldolase (HOGA1) | gi|73998495 | 38,052 | 7.6 | Up |
| Metabolism (5) | |||||
| 11 | Agmatinase (AGMAT) | gi|194674166 | 39,419 | 8.77 | Up |
| 12 | Acetyl-Coenzyme A acetyltransferase 2 (ACAT2) | gi|109659291 | 41,657 | 6.46 | Up |
| 14 | 3-hydroxyanthranilate 3,4-dioxygenase (HAAO) | gi|115495835 | 32,701 | 5.51 | Down |
| 16 | Alpha enolase (ENO1) | gi|4927286 | 47,589 | 6.44 | Up |
| 4 | UMP-CMP kinase-like isoform 1 | gi|109087275 | 26,237 | 8.14 | Up |
| RA metabolism (2) | |||||
| 9 | Retinal dehydrogenase 1 (RALDH1) | gi|57526379 | 55,417 | 6.37 | Up |
| 20 | Retinol-binding protein (RBP) | gi|415585 | 15,473 | 5.89 | Down |
| Transport protein (2) | |||||
| 2 | Hemoglobin subunit beta-A | gi|122540 | 16,068 | 6.75 | Down |
| 15 | Albumin precursor | gi|1930850052 | 68,266 | 5.58 | Down |
| Cytoskeletal structure (1) | |||||
| 19 | Actin,beta | gi|148744172 | 42,022 | 5.29 | Down |
aMALDI-TOF-MS = matrix-assisted laser desorption ionization-time of flight mass spectrometry. pI isoelectric point; gi GenInfo Identifier
bProtein name and accession numbers were derived from NCBI database
Fig. 2Western blot analysis of the ENO1, β-actin and Hsp60. a enolase α (ENO-1), b β-actin, c heat stress protein 60 (HSP60). Value is mean ± SEM. **p < 0.01 vs. LC. n = 6/group
Fig. 3Comparison of total anti-oxidative capacity and SOD enzyme activity in liver. a Total anti-oxidant capacity (T-AOC), b SOD enzyme activity. The results are mean ± SEM. *P < 0.05 vs. LC. n = 6/group
Fig. 4Real-time PCR analysis of the protein. Values are mean ± SEM. *P < 0.05 vs. LC. GAPDH was used as the reference gene for gene expression. n = 6/group
Fig. 5Gene ontology (GO) analysis of differentially expressed protein. a biological process b cellular components c molecular function
Fig. 6Acute phase response in liver induced by high concentrate diet. Values are mean ± SEM. #p < 0.1 *P< 0.05 vs. LC. GAPDH was used as the reference gene for gene expression. n = 6/group
Fig. 7Real-time PCR analysis of GSTs family gene expression. Values are mean ± SEM. # P< 0.1 *p < 0.05 vs. LC. GAPDH was used as the reference gene for gene expression. n = 6/group
Fig. 8Gene expression of mitochondrial gene. Values are mean ± SEM. # P < 0.1 *P < 0.05 vs. LC. GAPDH was used as the reference gene for gene expression. n = 6/group