Literature DB >> 26854668

Engineering nonphosphorylative metabolism to generate lignocellulose-derived products.

Yi-Shu Tai1, Mingyong Xiong1, Pooja Jambunathan1, Jingyu Wang1, Jilong Wang1, Cole Stapleton1, Kechun Zhang1.   

Abstract

Conversion of lignocellulosic biomass into value-added products provides important environmental and economic benefits. Here we report the engineering of an unconventional metabolism for the production of tricarboxylic acid (TCA)-cycle derivatives from D-xylose, L-arabinose and D-galacturonate. We designed a growth-based selection platform to identify several gene clusters functional in Escherichia coli that can perform this nonphosphorylative assimilation of sugars into the TCA cycle in less than six steps. To demonstrate the application of this new metabolic platform, we built artificial biosynthetic pathways to 1,4-butanediol (BDO) with a theoretical molar yield of 100%. By screening and engineering downstream pathway enzymes, 2-ketoacid decarboxylases and alcohol dehydrogenases, we constructed E. coli strains capable of producing BDO from D-xylose, L-arabinose and D-galacturonate. The titers, rates and yields were higher than those previously reported using conventional pathways. This work demonstrates the potential of nonphosphorylative metabolism for biomanufacturing with improved biosynthetic efficiencies.

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Year:  2016        PMID: 26854668     DOI: 10.1038/nchembio.2020

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  42 in total

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Authors:  Priti Pharkya; Anthony P Burgard; Costas D Maranas
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2.  Characterization of the Saccharomyces cerevisiae YMR318C (ADH6) gene product as a broad specificity NADPH-dependent alcohol dehydrogenase: relevance in aldehyde reduction.

Authors:  Carol Larroy; M Rosario Fernández; Eva González; Xavier Parés; Josep A Biosca
Journal:  Biochem J       Date:  2002-01-01       Impact factor: 3.857

3.  Identification and characterization of L-arabonate dehydratase, L-2-keto-3-deoxyarabonate dehydratase, and L-arabinolactonase involved in an alternative pathway of L-arabinose metabolism. Novel evolutionary insight into sugar metabolism.

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Journal:  J Biol Chem       Date:  2006-09-01       Impact factor: 5.157

4.  Benzoylformate decarboxylase from Pseudomonas putida as stable catalyst for the synthesis of chiral 2-hydroxy ketones.

Authors:  H Iding; T Dünnwald; L Greiner; A Liese; M Müller; P Siegert; J Grötzinger; A S Demir; M Pohl
Journal:  Chemistry       Date:  2000-04-14       Impact factor: 5.236

5.  Biochemical and molecular characterization of alpha-ketoisovalerate decarboxylase, an enzyme involved in the formation of aldehydes from amino acids by Lactococcus lactis.

Authors:  Marta de la Plaza; Pilar Fernández de Palencia; Carmen Peláez; Teresa Requena
Journal:  FEMS Microbiol Lett       Date:  2004-09-15       Impact factor: 2.742

6.  Establishment of oxidative D-xylose metabolism in Pseudomonas putida S12.

Authors:  Jean-Paul Meijnen; Johannes H de Winde; Harald J Ruijssenaars
Journal:  Appl Environ Microbiol       Date:  2009-03-06       Impact factor: 4.792

7.  Scalable production of mechanically tunable block polymers from sugar.

Authors:  Mingyong Xiong; Deborah K Schneiderman; Frank S Bates; Marc A Hillmyer; Kechun Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  2014-05-27       Impact factor: 11.205

8.  Formation of alpha-ketoglutaric semialdehyde from L-2-keto-3-deoxyarabonic acid and isolation of L-2-keto-3-deoxyarabonate dehydratase from Pseudomonas saccharophila.

Authors:  A C Stoolmiller; R H Abeles
Journal:  J Biol Chem       Date:  1966-12-25       Impact factor: 5.157

9.  Cloning and characterization of uronate dehydrogenases from two pseudomonads and Agrobacterium tumefaciens strain C58.

Authors:  Sang-Hwal Yoon; Tae Seok Moon; Pooya Iranpour; Amanda M Lanza; Kristala Jones Prather
Journal:  J Bacteriol       Date:  2008-12-05       Impact factor: 3.490

10.  Structure of the branched-chain keto acid decarboxylase (KdcA) from Lactococcus lactis provides insights into the structural basis for the chemoselective and enantioselective carboligation reaction.

Authors:  Catrine L Berthold; Dörte Gocke; Martin D Wood; Finian J Leeper; Martina Pohl; Gunter Schneider
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2007-11-16
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  21 in total

1.  Bacterial synthesis of C3-C5 diols via extending amino acid catabolism.

Authors:  Jian Wang; Chenyi Li; Yusong Zou; Yajun Yan
Journal:  Proc Natl Acad Sci U S A       Date:  2020-07-27       Impact factor: 11.205

2.  A microbial factory for diverse chemicals.

Authors:  Chiam Yu Ng; Anupam Chowdhury; Costas D Maranas
Journal:  Nat Biotechnol       Date:  2016-05-06       Impact factor: 54.908

3.  Developing a pyruvate-driven metabolic scenario for growth-coupled microbial production.

Authors:  Jian Wang; Ruihua Zhang; Yan Zhang; Yaping Yang; Yuheng Lin; Yajun Yan
Journal:  Metab Eng       Date:  2019-07-23       Impact factor: 9.783

4.  Overcoming glutamate auxotrophy in Escherichia coli itaconate overproducer by the Weimberg pathway.

Authors:  Ken W Lu; Chris T Wang; Hengray Chang; Ryan S Wang; Claire R Shen
Journal:  Metab Eng Commun       Date:  2021-12-02

Review 5.  Microbial production of advanced biofuels.

Authors:  Jay Keasling; Hector Garcia Martin; Taek Soon Lee; Aindrila Mukhopadhyay; Steven W Singer; Eric Sundstrom
Journal:  Nat Rev Microbiol       Date:  2021-06-25       Impact factor: 60.633

Review 6.  Engineered biosynthesis of biodegradable polymers.

Authors:  Pooja Jambunathan; Kechun Zhang
Journal:  J Ind Microbiol Biotechnol       Date:  2016-06-03       Impact factor: 3.346

7.  Utilization of xylose by engineered strains of Ashbya gossypii for the production of microbial oils.

Authors:  José Luis Revuelta; Alberto Jiménez; David Díaz-Fernández; Patricia Lozano-Martínez; Rubén M Buey
Journal:  Biotechnol Biofuels       Date:  2017-01-03       Impact factor: 6.040

Review 8.  Production of C2-C4 diols from renewable bioresources: new metabolic pathways and metabolic engineering strategies.

Authors:  Ye Zhang; Dehua Liu; Zhen Chen
Journal:  Biotechnol Biofuels       Date:  2017-12-13       Impact factor: 6.040

9.  Redesigning metabolism based on orthogonality principles.

Authors:  Aditya Vikram Pandit; Shyam Srinivasan; Radhakrishnan Mahadevan
Journal:  Nat Commun       Date:  2017-05-30       Impact factor: 14.919

10.  Catalytically active inclusion bodies of L-lysine decarboxylase from E. coli for 1,5-diaminopentane production.

Authors:  Ramona Kloss; Michael H Limberg; Ursula Mackfeld; Doris Hahn; Alexander Grünberger; Vera D Jäger; Ulrich Krauss; Marco Oldiges; Martina Pohl
Journal:  Sci Rep       Date:  2018-04-11       Impact factor: 4.379

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