Literature DB >> 26853832

Gas-Phase Folding of a Prototypical Protonated Pentapeptide: Spectroscopic Evidence for Formation of a Charge-Stabilized β-Hairpin.

Nicole L Burke1, Andrew F DeBlase1, James G Redwine1, John R Hopkins1, Scott A McLuckey1, Timothy S Zwier1.   

Abstract

Ultraviolet and infrared-ultraviolet (IR-UV) double-resonance photofragment spectroscopy has been carried out in a tandem mass spectrometer to determine the three-dimensional structure of cryogenically cooled protonated C-terminally methyl esterified leucine enkephalin [YGGFL-OMe+H](+). By comparing the experimental IR spectrum of the dominant conformer with the predictions of DFT M05-2X/6-31+G(d) calculations, a backbone structure was assigned that is analogous to that previously assigned by our group for the unmodified peptide [ Burke, N.L.; et al. Int. J. Mass Spectrom. 2015 , 378 , 196 ], despite the loss of a C-terminal OH binding site that was thought to play an important role in its stabilization. Both structures are characterized by a type II' β-turn around Gly(3)-Phe(4) and a γ-turn around Gly(2), providing spectroscopic evidence for the formation of a β-hairpin hydrogen bonding pattern. Rather than disrupting the peptide backbone structure, the protonated N-terminus serves to stabilize the β-hairpin by positioning itself in a pocket above the turn where it can form H-bonds to the Gly(3) and C-terminus C═O groups. This β-hairpin type structure has been previously proposed as the biologically active conformation of leucine enkephalin and its methyl ester in the nonpolar cell membrane environment [ Naito, A.; Nishimura, K. Curr. Top. Med. Chem. 2004 , 4 , 135 - 143 ].

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Year:  2016        PMID: 26853832     DOI: 10.1021/jacs.6b00093

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  6 in total

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2.  Diversity of Secondary Structure in Catalytic Peptides with β-Turn-Biased Sequences.

Authors:  Anthony J Metrano; Nadia C Abascal; Brandon Q Mercado; Eric K Paulson; Anna E Hurtley; Scott J Miller
Journal:  J Am Chem Soc       Date:  2016-12-28       Impact factor: 15.419

3.  CID fragmentation, H/D exchange and supermetallization of Barnase-Barstar complex.

Authors:  Yury Kostyukevich; Aleksej A Shulga; Alexey Kononikhin; Igor Popov; Eugene Nikolaev; Sergey Deyev
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4.  Towards theoretical spectroscopy with error bars: systematic quantification of the structural sensitivity of calculated spectra.

Authors:  Tobias G Bergmann; Michael O Welzel; Christoph R Jacob
Journal:  Chem Sci       Date:  2019-12-27       Impact factor: 9.825

5.  Photoelectron Transfer Dissociation Reveals Surprising Favorability of Zwitterionic States in Large Gaseous Peptides and Proteins.

Authors:  James Bonner; Yana A Lyon; Christopher Nellessen; Ryan R Julian
Journal:  J Am Chem Soc       Date:  2017-07-18       Impact factor: 15.419

6.  Rotational Spectroscopy Meets Quantum Chemistry for Analyzing Substituent Effects on Non-Covalent Interactions: The Case of the Trifluoroacetophenone-Water Complex.

Authors:  Juncheng Lei; Silvia Alessandrini; Junhua Chen; Yang Zheng; Lorenzo Spada; Qian Gou; Cristina Puzzarini; Vincenzo Barone
Journal:  Molecules       Date:  2020-10-23       Impact factor: 4.411

  6 in total

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