Literature DB >> 26853452

The point of no return: The poly(A)-associated elongation checkpoint.

Michael Tellier1, Ivan Ferrer-Vicens1, Shona Murphy1.   

Abstract

Cyclin-dependent kinases play critical roles in transcription by RNA polymerase II (pol II) and processing of the transcripts. For example, CDK9 regulates transcription of protein-coding genes, splicing, and 3' end formation of the transcripts. Accordingly, CDK9 inhibitors have a drastic effect on the production of mRNA in human cells. Recent analyses indicate that CDK9 regulates transcription at the early-elongation checkpoint of the vast majority of pol II-transcribed genes. Our recent discovery of an additional CDK9-regulated elongation checkpoint close to poly(A) sites adds a new layer to the control of transcription by this critical cellular kinase. This novel poly(A)-associated checkpoint has the potential to powerfully regulate gene expression just before a functional polyadenylated mRNA is produced: the point of no return. However, many questions remain to be answered before the role of this checkpoint becomes clear. Here we speculate on the possible biological significance of this novel mechanism of gene regulation and the players that may be involved.

Entities:  

Keywords:  Elongation; P-TEFb; elongation checkpoint; pol II; polyadenylation

Mesh:

Substances:

Year:  2016        PMID: 26853452      PMCID: PMC4829286          DOI: 10.1080/15476286.2016.1142037

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  50 in total

1.  Transitions in RNA polymerase II elongation complexes at the 3' ends of genes.

Authors:  Minkyu Kim; Seong-Hoon Ahn; Nevan J Krogan; Jack F Greenblatt; Stephen Buratowski
Journal:  EMBO J       Date:  2004-01-22       Impact factor: 11.598

Review 2.  Remote control of gene transcription.

Authors:  Adam G West; Peter Fraser
Journal:  Hum Mol Genet       Date:  2005-04-15       Impact factor: 6.150

3.  A role for the CPF 3'-end processing machinery in RNAP II-dependent gene looping.

Authors:  Athar Ansari; Michael Hampsey
Journal:  Genes Dev       Date:  2005-11-30       Impact factor: 11.361

4.  RNA polymerase II pauses and associates with pre-mRNA processing factors at both ends of genes.

Authors:  Kira Glover-Cutter; Soojin Kim; Joaquin Espinosa; David L Bentley
Journal:  Nat Struct Mol Biol       Date:  2007-12-23       Impact factor: 15.369

Review 5.  Cracking the RNA polymerase II CTD code.

Authors:  Sylvain Egloff; Shona Murphy
Journal:  Trends Genet       Date:  2008-05-03       Impact factor: 11.639

6.  Polyadenylation factor CPSF-73 is the pre-mRNA 3'-end-processing endonuclease.

Authors:  Corey R Mandel; Syuzo Kaneko; Hailong Zhang; Damara Gebauer; Vasupradha Vethantham; James L Manley; Liang Tong
Journal:  Nature       Date:  2006-11-26       Impact factor: 49.962

7.  Bur1 kinase is required for efficient transcription elongation by RNA polymerase II.

Authors:  Michael-Christopher Keogh; Vladimir Podolny; Stephen Buratowski
Journal:  Mol Cell Biol       Date:  2003-10       Impact factor: 4.272

8.  Gene loops juxtapose promoters and terminators in yeast.

Authors:  Justin M O'Sullivan; Sue Mei Tan-Wong; Antonin Morillon; Barbara Lee; Joel Coles; Jane Mellor; Nick J Proudfoot
Journal:  Nat Genet       Date:  2004-08-15       Impact factor: 38.330

9.  Phosphorylation of serine 2 within the RNA polymerase II C-terminal domain couples transcription and 3' end processing.

Authors:  Seong Hoon Ahn; Minkyu Kim; Stephen Buratowski
Journal:  Mol Cell       Date:  2004-01-16       Impact factor: 17.970

10.  Transcription-dependent gene looping of the HIV-1 provirus is dictated by recognition of pre-mRNA processing signals.

Authors:  Kelly J Perkins; Marina Lusic; Ivonne Mitar; Mauro Giacca; Nick J Proudfoot
Journal:  Mol Cell       Date:  2008-01-18       Impact factor: 17.970

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  3 in total

1.  CDK9 and PP2A regulate RNA polymerase II transcription termination and coupled RNA maturation.

Authors:  Michael Tellier; Justyna Zaborowska; Jonathan Neve; Takayuki Nojima; Svenja Hester; Marjorie Fournier; Andre Furger; Shona Murphy
Journal:  EMBO Rep       Date:  2022-08-18       Impact factor: 9.071

2.  CDK12 globally stimulates RNA polymerase II transcription elongation and carboxyl-terminal domain phosphorylation.

Authors:  Michael Tellier; Justyna Zaborowska; Livia Caizzi; Eusra Mohammad; Taras Velychko; Björn Schwalb; Ivan Ferrer-Vicens; Daniel Blears; Takayuki Nojima; Patrick Cramer; Shona Murphy
Journal:  Nucleic Acids Res       Date:  2020-08-20       Impact factor: 16.971

Review 3.  CDK9 keeps RNA polymerase II on track.

Authors:  Sylvain Egloff
Journal:  Cell Mol Life Sci       Date:  2021-06-19       Impact factor: 9.261

  3 in total

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