Literature DB >> 26850935

Droplet digital PCR combined with minisequencing, a new approach to analyze fetal DNA from maternal blood: application to the non-invasive prenatal diagnosis of achondroplasia.

Lucie Orhant1, Olivia Anselem2, Mélanie Fradin3, Pierre Hadrien Becker1, Caroline Beugnet1, Nathalie Deburgrave1, Gilles Tafuri1, Franck Letourneur4, François Goffinet2, Laïla Allach El Khattabi5, France Leturcq1, Thierry Bienvenu1,4, Vassilis Tsatsaris2, Juliette Nectoux1,4.   

Abstract

BACKGROUND: Achondroplasia is generally detected by abnormal prenatal ultrasound findings in the third trimester of pregnancy and then confirmed by molecular genetic testing of fetal genomic DNA obtained by aspiration of amniotic fluid. This invasive procedure presents a small but significant risk for both the fetus and mother. Therefore, non-invasive procedures using cell-free fetal DNA in maternal plasma have been developed for the detection of the fetal achondroplasia mutations.
METHODS: To determine whether the fetus carries the de novo mis-sense genetic mutation at nucleotide 1138 in FGFR3 gene involved in >99% of achondroplasia cases, we developed two independent methods: digital-droplet PCR combined with minisequencing, which are very sensitive methods allowing detection of rare alleles.
RESULTS: We collected 26 plasmatic samples from women carrying fetus at risk of achondroplasia and diagnosed to date a total of five affected fetuses in maternal blood. The sensitivity and specificity of our test are respectively 100% [95% confidence interval, 56.6-100%] and 100% [95% confidence interval, 84.5-100%].
CONCLUSIONS: This novel, original strategy for non-invasive prenatal diagnosis of achondroplasia is suitable for implementation in routine clinical testing and allows considering extending the applications of these technologies in non-invasive prenatal diagnosis of many other monogenic diseases.
© 2016 John Wiley & Sons, Ltd. © 2016 John Wiley & Sons, Ltd.

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Year:  2016        PMID: 26850935     DOI: 10.1002/pd.4790

Source DB:  PubMed          Journal:  Prenat Diagn        ISSN: 0197-3851            Impact factor:   3.050


  12 in total

1.  Targeted next-generation sequencing for differential diagnosis of neurofibromatosis type 2, schwannomatosis, and meningiomatosis.

Authors:  Camille Louvrier; Eric Pasmant; Audrey Briand-Suleau; Joëlle Cohen; Patrick Nitschké; Juliette Nectoux; Lucie Orhant; Cécile Zordan; Cyril Goizet; Stéphane Goutagny; Dominique Lallemand; Michel Vidaud; Dominique Vidaud; Michel Kalamarides; Béatrice Parfait
Journal:  Neuro Oncol       Date:  2018-06-18       Impact factor: 12.300

Review 2.  Current, Emerging, and Future Applications of Digital PCR in Non-Invasive Prenatal Diagnosis.

Authors:  Juliette Nectoux
Journal:  Mol Diagn Ther       Date:  2018-04       Impact factor: 4.074

Review 3.  Achondroplasia: a comprehensive clinical review.

Authors:  Richard M Pauli
Journal:  Orphanet J Rare Dis       Date:  2019-01-03       Impact factor: 4.123

4.  Noninvasive Fetal Sex Determination by Real-Time PCR and TaqMan Probes.

Authors:  Mohammad Hossein Ahmadi; Naser Amirizadeh; Maryam Rabiee; Fatemeh Rahimi-Sharbaf; Ali Akbar Pourfathollah
Journal:  Rep Biochem Mol Biol       Date:  2020-10

Review 5.  Applicability of digital PCR to the investigation of pediatric-onset genetic disorders.

Authors:  Matthew E R Butchbach
Journal:  Biomol Detect Quantif       Date:  2016-08-08

Review 6.  Current Care and Investigational Therapies in Achondroplasia.

Authors:  Sheila Unger; Luisa Bonafé; Elvire Gouze
Journal:  Curr Osteoporos Rep       Date:  2017-04       Impact factor: 5.096

7.  A Cell-free DNA Barcode-Enabled Single-Molecule Test for Noninvasive Prenatal Diagnosis of Monogenic Disorders: Application to β-Thalassemia.

Authors:  Xingkun Yang; Qinghua Zhou; Wanjun Zhou; Mei Zhong; Xiaoling Guo; Xiaofeng Wang; Xin Fan; Shanhuo Yan; Liyan Li; Yunli Lai; Yongli Wang; Jin Huang; Yuhua Ye; Huaping Zeng; Jun Chuan; Yuanping Du; Chouxian Ma; Peining Li; Zhuo Song; Xiangmin Xu
Journal:  Adv Sci (Weinh)       Date:  2019-04-01       Impact factor: 16.806

8.  Simultaneous detection of fetal aneuploidy, de novo FGFR3 mutations and paternally derived β-thalassemia by a novel method of noninvasive prenatal testing.

Authors:  Lin Yang; Yujing Wu; Zhiyang Hu; Haiping Zhang; Dandan Pu; Huijuan Yan; Sijia Zhang; Hui Jiang; Qiang Liu; Yuying Yuan; Yanyan Zhang; Fang Chen; Yanping Lu; Silin Pan; Linhua Lin; Ya Gao
Journal:  Prenat Diagn       Date:  2021-01-21       Impact factor: 3.050

9.  Fast Temperature-Gradient COLD PCR for the enrichment of the paternally inherited SNPs in cell free fetal DNA; an application to non-invasive prenatal diagnosis of β-thalassaemia.

Authors:  Stefania Byrou; G Mike Makrigiorgos; Agathoklis Christofides; Ioannis Kallikas; Thessalia Papasavva; Marina Kleanthous
Journal:  PLoS One       Date:  2018-07-25       Impact factor: 3.240

10.  Detection of cell-free foetal DNA fraction in female-foetus bearing pregnancies using X-chromosomal insertion/deletion polymorphisms examined by digital droplet PCR.

Authors:  Iveta Zednikova; Eva Pazourkova; Sona Lassakova; Barbora Vesela; Marie Korabecna
Journal:  Sci Rep       Date:  2020-11-18       Impact factor: 4.379

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