Literature DB >> 26837869

Stochastic modelling and control of antibiotic subtilin production.

V Thalhofer1, M Annunziato2, A Borzì1.   

Abstract

A stochastic hybrid model for the production of the antibiotic subtilin by the Bacillus subtilis is investigated. This model consists of 5 variables with four possible discrete dynamical states and this high dimensionality represents a bottleneck for using statistical tools that require to solve the corresponding Fokker-Planck problem. For this reason, a suitable reduced model with 3 variables and two dynamical states is proposed. The corresponding Fokker-Planck hyperbolic system is used to validate the evolution statistics and to construct a robust feedback control strategy to increase subtilin production. Results of numerical experiments are presented that show the effectiveness of the proposed control scheme.

Entities:  

Keywords:  Optimal control antibiotic production; Stochastic hybrid biology modelling; Subtilin antibiotic

Mesh:

Substances:

Year:  2016        PMID: 26837869     DOI: 10.1007/s00285-016-0968-6

Source DB:  PubMed          Journal:  J Math Biol        ISSN: 0303-6812            Impact factor:   2.259


  6 in total

1.  Theory of hybrid dynamical systems and its applications to biological and medical systems.

Authors:  Kazuyuki Aihara; Hideyuki Suzuki
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2010-11-13       Impact factor: 4.226

Review 2.  Stochastic hybrid systems for studying biochemical processes.

Authors:  Abhyudai Singh; João P Hespanha
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2010-11-13       Impact factor: 4.226

3.  Molecular mechanism of target recognition by subtilin, a class I lanthionine antibiotic.

Authors:  Judicaël Parisot; Sarah Carey; Eefjan Breukink; Weng C Chan; Arjan Narbad; Boyan Bonev
Journal:  Antimicrob Agents Chemother       Date:  2007-11-12       Impact factor: 5.191

Review 4.  Bacillus subtilis antibiotics: structures, syntheses and specific functions.

Authors:  Torsten Stein
Journal:  Mol Microbiol       Date:  2005-05       Impact factor: 3.501

5.  Mechanism of transcriptional bursting in bacteria.

Authors:  Shasha Chong; Chongyi Chen; Hao Ge; X Sunney Xie
Journal:  Cell       Date:  2014-07-17       Impact factor: 41.582

6.  Setting up and modelling of overflowing fed-batch cultures of Bacillus subtilis for the production and continuous removal of lipopeptides.

Authors:  J S Guez; S Chenikher; J Ph Cassar; P Jacques
Journal:  J Biotechnol       Date:  2007-06-02       Impact factor: 3.307

  6 in total

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