| Literature DB >> 26834482 |
Jun Chen1, Xue-Ming Ying2, Xue-Ming Huang3, Peng Huang4, Shao-Cong Yan1.
Abstract
Inflammation represents an important event which facilitates prostate carcinogenesis. Genetic variations in inflammatory response genes could affect the level and function of the protein products, resulting in the differential prostate cancer risk among carriers of different variants. This study attempted to investigate the association of IL-4 rs2243250, IL-6 rs10499563, IL-8 rs4073, as well as NFKBIA rs2233406 and rs3138053 polymorphisms with prostate cancer risk in the Chinese population. Genotyping of the polymorphisms was performed by using polymerase chain reaction-restriction fragment length polymorphism technique on 439 prostate cancer patients and 524 controls, and the association of each polymorphic genotype with prostate cancer risk was evaluated by using logistic regression analysis based on allele, heterozygous, and homozygous comparison models, with adjustment to age and smoking status. We showed that the C allele of IL-4 rs2243250 polymorphism could increase prostate cancer risk (heterozygous comparison model: odds ratio [OR] =1.434, 95% confidence interval [CI] =1.092-1.881, P=0.009; homozygous comparison model: OR =2.301, 95% CI =1.402-3.775, P=0.001; allele comparison model: OR =1.509, 95% CI =1.228-1.853, P<0.001). On the other hand, the C allele of rs10499563 polymorphism could decrease prostate cancer risk (heterozygous comparison model: OR =0.694, 95% CI =0.525-0.918, P=0.010; homozygous comparison model: OR =0.499, 95% CI =0.269-0.926, P=0.028; allele comparison model: OR =0.692, 95% CI =0.553-0.867, P=0.001). No association was observed for the other polymorphisms. In conclusion, IL-4 rs2243250 and IL-6 rs10499563 polymorphisms could serve as potential predictive biomarkers for prostate cancer risk in the Chinese population.Entities:
Keywords: biomarkers; inflammation; logistic regression; polymorphisms; prostate neoplasm
Year: 2016 PMID: 26834482 PMCID: PMC4716763 DOI: 10.2147/OTT.S91420
Source DB: PubMed Journal: Onco Targets Ther ISSN: 1178-6930 Impact factor: 4.147
PCR primer sequence, annealing temperature, and product size, as well as restriction enzyme used and band sizes obtained after digestion, for genotyping of the polymorphisms
| SNP | Primer sequence | Annealing temperature (°C) | PCR product size (bp) | Restriction enzyme | Genotype (bp) | References |
|---|---|---|---|---|---|---|
| rs2243250 | 5′-TAAACTTGGGAGAACATGGT-3′ | 52 | 195 | Avall | TT: 195 | |
| 5′-TGGGGAAAGATAGAGTAATA-3′ | CT: 195+176+19 | |||||
| CC: 176+19 | ||||||
| rs10499563 | 5′-AGGGAAAGCAGGTTATCAAA-3′ | 61 | 424 | Taal | TT: 424 | |
| 5′-AGTGGCTTCAGGGAGACTAA-3′ | TC: 424+320+104 | |||||
| CC: 320+104 | ||||||
| rs4073 | 5′-ATCTTGTTCTAACACCTGCCACTCT-3′ | 59 | 121 | Munl | TT: 121 | |
| 5′-TAAAATACTGAAGCTCCACAATTTGG-3′ | TA: 121+82+39 | |||||
| AA: 82+39 | ||||||
| rs2233406 | 5′-GGTCCTTAAGGTCCAATCG-3′ | 62 | 200 | Bfal | CC: 180+20 | |
| 5′-GTTGTGGATACCTTGCACTA-3′ | CT: 200+180+20 | |||||
| TT: 200 | ||||||
| rs3138053 | 5′-GGTCCTTAAGGTCCAATCG-3′ | 62 | 200 | TspRl | AA: 200 | |
| 5′-GTTGTGGATACCTTGCACTA-3′ | AG: 200+129+71 | |||||
| GG: 129+71 |
Abbreviations: PCR, polymerase chain reaction; SNP, single-nucleotide polymorphism.
General characteristics of the subjects
| Characteristics | Case (n=439) | Control (n=524) | |
|---|---|---|---|
| Age, years | 0.420 | ||
| Mean ± SD | 69.85±8.66 | 69.39±8.74 | |
| Range | 48–87 | 42–85 | |
| Smoking status | 0.597 | ||
| Ever smokers | 201 (45.79%) | 231 (44.08%) | |
| Never smokers | 238 (54.21%) | 293 (55.92%) |
Abbreviation: SD, standard deviation.
Genotype and allele distribution of the five polymorphisms, as well as Hardy–Weinberg equilibrium of the controls
| Case (n=439), n (%) | Control (n=524), n (%) | HWEcontrol | ||
|---|---|---|---|---|
| rs2243250 | ||||
| | ||||
| TC | 171 (39.0) | 173 (33.0) | 0.056 | |
| | ||||
| | < | |||
| | ||||
| rs10499563 | ||||
| | ||||
| | ||||
| CC | 16 (3.6) | 33 (6.3) | 0.065 | |
| | ||||
| | ||||
| rs4073 | ||||
| TT | 164 (37.4) | 178 (34.0) | 0.274 | |
| TA | 201 (45.8) | 240 (45.8) | 0.996 | |
| AA | 74 (16.9) | 106 (20.2) | 0.182 | |
| T allele | 529 (60.3) | 596 (56.9) | 0.134 | |
| A allele | 349 (39.7) | 452 (43.1) | ||
| rs2233406 | ||||
| CC | 319 (72.7) | 401 (76.5) | 0.170 | |
| CT | 106 (24.1) | 113 (21.6) | 0.342 | |
| TT | 14 (3.2) | 10 (1.9) | 0.209 | |
| C allele | 744 (84.7) | 915 (87.3) | 0.104 | |
| T allele | 134 (15.3) | 133 (12.7) | ||
| rs3138053 | ||||
| AA | 324 (73.8) | 398 (76.0) | 0.443 | |
| AG | 109 (24.8) | 121 (23.1) | 0.529 | |
| GG | 6 (1.4) | 5 (1.00) | 0.551 | |
| A allele | 757 (86.2) | 917 (87.5) | 0.406 | |
| G allele | 121 (13.8) | 131 (12.5) | ||
Notes:
Significant at P<0.05. Data in bold indicates statistical significance.
Abbreviation: HWEcontrol, Hardy-Weinberg equilibrium in controls.
Association of the polymorphisms and prostate cancer risk based on heterozygous, homozygous, and allele comparison models
| SNP | Comparison model | Odds ratio (95% CI) | |
|---|---|---|---|
| rs2243250 | Heterozygous comparison (TC vs TT) | 1.430 (1.085, 1.877) | 0.010 |
| Homozygous comparison (CC vs TT) | 2.293 (1.397, 3.763) | 0.001 | |
| Allele comparison (C vs T) | 1.509 (1.228, 1.853) | <0.001 | |
| rs10499563 | Heterozygous comparison (TC vs TT) | 0.696 (0.526, 0.920) | 0.011 |
| Homozygous comparison (CC vs TT) | 0.504 (0.272, 0.936) | 0.030 | |
| Allele comparison (C vs T) | 0.692 (0.553, 0.867) | 0.001 | |
| rs4073 | Heterozygous comparison (TA vs TT) | 0.912 (0.687, 1.211) | 0.523 |
| Homozygous comparison (AA vs TT) | 0.762 (0.529, 1.098) | 0.145 | |
| Allele comparison (A vs T) | 0.873 (0.727, 1.047) | 0.143 | |
| rs2233406 | Heterozygous comparison (CT vs CC) | 1.188 (0.877, 1.610) | 0.265 |
| Homozygous comparison (TT vs CC) | 1.762 (0.772, 4.021) | 0.179 | |
| Allele comparison (T vs C) | 1.246 (0.962, 1.614) | 0.096 | |
| rs3138053 | Heterozygous comparison (AG vs AA) | 1.121 (0.832, 1.512) | 0.452 |
| Homozygous comparison (GG vs AA) | 1.501 (0.453, 4.973) | 0.507 | |
| Allele comparison (G vs A) | 1.132 (0.868, 1.476) | 0.361 |
Notes:
Significant at P<0.05.
Adjusted to age and smoking status.
Abbreviations: SNP, single-nucleotide polymorphism; CI, confidence interval.