Literature DB >> 26833716

Conserved structure of Snu13 from the highly reduced spliceosome of Cyanidioschyzon merolae.

C S Black1, E L Garside2, A M MacMillan2, S D Rader1.   

Abstract

Structural and functional analysis of proteins involved in pre-mRNA splicing is challenging because of the complexity of the splicing machinery, known as the spliceosome. Bioinformatic, proteomic, and biochemical analyses have identified a minimal spliceosome in the red alga Cyanidioschyzon merolae. This spliceosome consists of only 40 core proteins, compared to ∼ 70 in S. cerevisiae (yeast) and ∼ 150 in humans. We report the X-ray crystallographic analysis of C. merolae Snu13 (CmSnu13), a key component of the assembling spliceosome, and present evidence for conservation of Snu13 function in this algal splicing pathway. The near identity of CmSnu13's three-dimensional structure to yeast and human Snu13 suggests that C. merolae should be an excellent model system for investigating the structure and function of the conserved core of the spliceosome.
© 2016 The Protein Society.

Entities:  

Keywords:  Cyanidioschyzon merolae; RNA binding; U4 snRNP; X-ray crystallography; fluorescence polarization; minimal spliceosome; pre-mRNA splicing; snRNP assembly; thermophile

Mesh:

Substances:

Year:  2016        PMID: 26833716      PMCID: PMC4941210          DOI: 10.1002/pro.2894

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  30 in total

1.  Purification of the yeast U4/U6.U5 small nuclear ribonucleoprotein particle and identification of its proteins.

Authors:  S W Stevens; J Abelson
Journal:  Proc Natl Acad Sci U S A       Date:  1999-06-22       Impact factor: 11.205

2.  Functional interaction of a novel 15.5kD [U4/U6.U5] tri-snRNP protein with the 5' stem-loop of U4 snRNA.

Authors:  S Nottrott; K Hartmuth; P Fabrizio; H Urlaub; I Vidovic; R Ficner; R Lührmann
Journal:  EMBO J       Date:  1999-11-01       Impact factor: 11.598

3.  A common core RNP structure shared between the small nucleoar box C/D RNPs and the spliceosomal U4 snRNP.

Authors:  N J Watkins; V Ségault; B Charpentier; S Nottrott; P Fabrizio; A Bachi; M Wilm; M Rosbash; C Branlant; R Lührmann
Journal:  Cell       Date:  2000-10-27       Impact factor: 41.582

4.  Archaeal ribosomal protein L7 is a functional homolog of the eukaryotic 15.5kD/Snu13p snoRNP core protein.

Authors:  Jeffrey F Kuhn; Elizabeth J Tran; E Stuart Maxwell
Journal:  Nucleic Acids Res       Date:  2002-02-15       Impact factor: 16.971

5.  Crystal structure of the spliceosomal 15.5kD protein bound to a U4 snRNA fragment.

Authors:  I Vidovic; S Nottrott; K Hartmuth; R Lührmann; R Ficner
Journal:  Mol Cell       Date:  2000-12       Impact factor: 17.970

6.  T-Coffee: A novel method for fast and accurate multiple sequence alignment.

Authors:  C Notredame; D G Higgins; J Heringa
Journal:  J Mol Biol       Date:  2000-09-08       Impact factor: 5.469

7.  Hierarchical, clustered protein interactions with U4/U6 snRNA: a biochemical role for U4/U6 proteins.

Authors:  Stephanie Nottrott; Henning Urlaub; Reinhard Lührmann
Journal:  EMBO J       Date:  2002-10-15       Impact factor: 11.598

8.  Structural basis for thermophilic protein stability: structures of thermophilic and mesophilic malate dehydrogenases.

Authors:  Bjørn Dalhus; Markuu Saarinen; Uwe H Sauer; Pär Eklund; Kenth Johansson; Andreas Karlsson; S Ramaswamy; Alexandra Bjørk; Bjørnar Synstad; Kristine Naterstad; Reidun Sirevåg; Hans Eklund
Journal:  J Mol Biol       Date:  2002-05-03       Impact factor: 5.469

9.  Tobacco etch virus protease: mechanism of autolysis and rational design of stable mutants with wild-type catalytic proficiency.

Authors:  R B Kapust; J Tözsér; J D Fox; D E Anderson; S Cherry; T D Copeland; D S Waugh
Journal:  Protein Eng       Date:  2001-12

10.  Genome-wide bioinformatic and molecular analysis of introns in Saccharomyces cerevisiae.

Authors:  M Spingola; L Grate; D Haussler; M Ares
Journal:  RNA       Date:  1999-02       Impact factor: 4.942

View more
  3 in total

1.  Interactome Analysis of KIN (Kin17) Shows New Functions of This Protein.

Authors:  Vanessa Pinatto Gaspar; Anelise Cardoso Ramos; Philippe Cloutier; José Renato Pattaro Junior; Francisco Ferreira Duarte Junior; Annie Bouchard; Flavio Augusto Vicente Seixas; Benoit Coulombe; Maria Aparecida Fernandez
Journal:  Curr Issues Mol Biol       Date:  2021-07-22       Impact factor: 2.976

2.  The sole LSm complex in Cyanidioschyzon merolae associates with pre-mRNA splicing and mRNA degradation factors.

Authors:  Kirsten A Reimer; Martha R Stark; Lisbeth-Carolina Aguilar; Sierra R Stark; Robert D Burke; Jack Moore; Richard P Fahlman; Calvin K Yip; Haruko Kuroiwa; Marlene Oeffinger; Stephen D Rader
Journal:  RNA       Date:  2017-03-21       Impact factor: 4.942

3.  Identification of Alternative Polyadenylation in Cyanidioschyzon merolae Through Long-Read Sequencing of mRNA.

Authors:  Leonard Schärfen; Dagmar Zigackova; Kirsten A Reimer; Martha R Stark; Viktor A Slat; Nancy J Francoeur; Melissa L Wells; Lecong Zhou; Perry J Blackshear; Karla M Neugebauer; Stephen D Rader
Journal:  Front Genet       Date:  2022-01-28       Impact factor: 4.599

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.