Literature DB >> 26828960

Computational models of populations of bacteria and lytic phage.

Konrad Krysiak-Baltyn1, Gregory J O Martin1, Anthony D Stickland1, Peter J Scales1, Sally L Gras1.   

Abstract

The use of phages to control and reduce numbers of unwanted bacteria can be traced back to the early 1900s, when phages were explored as a tool to treat infections before the wide scale use of antibiotics. Recently, phage therapy has received renewed interest as a method to treat multiresistant bacteria. Phages are also widely used in the food industry to prevent the growth of certain bacteria in foods, and are currently being explored as a tool for use in bioremediation and wastewater treatment. Despite the large body of biological research on phages, relatively little attention has been given to computational modeling of the population dynamics of phage and bacterial interactions. The earliest model was described by Campbell in the 1960s. Subsequent modifications to this model include partial or complete resistance, multiple phage binding sites, and spatial heterogeneity. This review provides a general introduction to modeling of the population dynamics of bacteria and phage. The review introduces the basic model and relevant concepts and evaluates more complex variations of the basic model published to date, including a model of disease epidemics caused by infectious bacteria. Finally, the shortcomings and potential ways to improve the models are discussed.

Entities:  

Keywords:  Computational modeling; phage; population dynamics

Mesh:

Year:  2016        PMID: 26828960     DOI: 10.3109/1040841X.2015.1114466

Source DB:  PubMed          Journal:  Crit Rev Microbiol        ISSN: 1040-841X            Impact factor:   7.624


  9 in total

1.  Three novel Pseudomonas phages isolated from composting provide insights into the evolution and diversity of tailed phages.

Authors:  Deyvid Amgarten; Layla Farage Martins; Karen Cristina Lombardi; Luciana Principal Antunes; Ana Paula Silva de Souza; Gianlucca Gonçalves Nicastro; Elliott Watanabe Kitajima; Ronaldo Bento Quaggio; Chris Upton; João Carlos Setubal; Aline Maria da Silva
Journal:  BMC Genomics       Date:  2017-05-04       Impact factor: 3.969

2.  Temperature-dependent virus lifecycle choices may reveal and predict facets of the biology of opportunistic pathogenic bacteria.

Authors:  Halil I Egilmez; Andrew Yu Morozov; Martha R J Clokie; Jinyu Shan; Andrey Letarov; Edouard E Galyov
Journal:  Sci Rep       Date:  2018-06-25       Impact factor: 4.379

3.  Phage-Resistant Phase-Variant Sub-populations Mediate Herd Immunity Against Bacteriophage Invasion of Bacterial Meta-Populations.

Authors:  Christopher J R Turkington; Andrew Morozov; Martha R J Clokie; Christopher D Bayliss
Journal:  Front Microbiol       Date:  2019-07-05       Impact factor: 5.640

Review 4.  Pharmacological limitations of phage therapy.

Authors:  Anders S Nilsson
Journal:  Ups J Med Sci       Date:  2019-11-14       Impact factor: 2.384

5.  Growth-Dependent Predation and Generalized Transduction of Antimicrobial Resistance by Bacteriophage.

Authors:  Quentin J Leclerc; Jacob Wildfire; Arya Gupta; Jodi A Lindsay; Gwenan M Knight
Journal:  mSystems       Date:  2022-03-21       Impact factor: 7.324

6.  Modelling of filamentous phage-induced antibiotic tolerance of P. aeruginosa.

Authors:  Maria van Rossem; Sandra Wilks; Malgosia Kaczmarek; Patrick R Secor; Giampaolo D'Alessandro
Journal:  PLoS One       Date:  2022-04-11       Impact factor: 3.240

7.  Computational Modelling of Large Scale Phage Production Using a Two-Stage Batch Process.

Authors:  Konrad Krysiak-Baltyn; Gregory J O Martin; Sally L Gras
Journal:  Pharmaceuticals (Basel)       Date:  2018-04-08

8.  Fighting Fire with Fire: Phage Potential for the Treatment of E. coli O157 Infection.

Authors:  Cristina Howard-Varona; Dean R Vik; Natalie E Solonenko; Yueh-Fen Li; M Consuelo Gazitua; Lauren Chittick; Jennifer K Samiec; Aubrey E Jensen; Paige Anderson; Adrian Howard-Varona; Anika A Kinkhabwala; Stephen T Abedon; Matthew B Sullivan
Journal:  Antibiotics (Basel)       Date:  2018-11-16

9.  Dual Predation by Bacteriophage and Bdellovibrio bacteriovorus Can Eradicate Escherichia coli Prey in Situations where Single Predation Cannot.

Authors:  Laura Hobley; J Kimberley Summers; Rob Till; David S Milner; Robert J Atterbury; Amy Stroud; Michael J Capeness; Stephanie Gray; Andreas Leidenroth; Carey Lambert; Ian Connerton; Jamie Twycross; Michelle Baker; Jess Tyson; Jan-Ulrich Kreft; R Elizabeth Sockett
Journal:  J Bacteriol       Date:  2020-02-25       Impact factor: 3.490

  9 in total

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