Literature DB >> 26827247

High-Resolution DNA Melting Analysis in Plant Research.

Ivan Simko1.   

Abstract

Genetic and genomic studies provide valuable insight into the inheritance, structure, organization, and function of genes. The knowledge gained from the analysis of plant genes is beneficial to all aspects of plant research, including crop improvement. New methods and tools are continually being developed to facilitate rapid and accurate mapping, sequencing, and analyzing of genes. Here, I review the recent progress in the application of high-resolution melting (HRM) analysis of DNA, a method that allows detecting polymorphism in double-stranded DNA by comparing profiles of melting curves. Use of HRM has expanded considerably in the past few years as the method was successfully applied for high-throughput genotyping, mapping genes, testing food products and seeds, and other areas of plant research. Published by Elsevier Ltd.

Keywords:  barcoding; fingerprinting; genotyping; marker-assisted selection; mutation detection

Mesh:

Substances:

Year:  2016        PMID: 26827247     DOI: 10.1016/j.tplants.2016.01.004

Source DB:  PubMed          Journal:  Trends Plant Sci        ISSN: 1360-1385            Impact factor:   18.313


  29 in total

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Authors:  Jugpreet Singh; Salvador A Gezan; C Eduardo Vallejos
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Review 2.  Poisonous or non-poisonous plants? DNA-based tools and applications for accurate identification.

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Journal:  3 Biotech       Date:  2017-06-30       Impact factor: 2.406

4.  qPCR and HRM-based diagnosis of SNPs on growth differentiation factor 9 (GDF9), a gene associated with sheep (Ovis aries) prolificacy.

Authors:  Raquel Anahí Escobar-Chaparro; Gabriel Guillén; Luis Uribe Espejo-Galicia; Víctor Manuel Meza-Villalvazo; Julián Mario Peña-Castro; José Abad-Zavaleta
Journal:  3 Biotech       Date:  2017-06-30       Impact factor: 2.406

5.  Portuguese wild hop diversity assessment by fast SNP genotyping using high-resolution melting.

Authors:  Julio C Machado; Miguel A Faria; Ana Maria Barata; Isabel Gomes da Silva; Andreja Cerenak; Isabel M P L V O Ferreira
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6.  Genome-Wide Association Study of Resistance to Phytophthora capsici in the Pepper (Capsicum spp.) Collection.

Authors:  Nayoung Ro; Mesfin Haile; Onsook Hur; Bora Geum; Juhee Rhee; Aejin Hwang; Bitsam Kim; Jeaeun Lee; Bum-Soo Hahn; Jundae Lee; Byoung-Cheorl Kang
Journal:  Front Plant Sci       Date:  2022-05-20       Impact factor: 6.627

7.  High-resolution melting-based TILLING of γ ray-induced mutations in rice.

Authors:  Shan Li; Song-Mei Liu; Hao-Wei Fu; Jian-Zhong Huang; Qing-Yao Shu
Journal:  J Zhejiang Univ Sci B       Date:  2018 Aug.       Impact factor: 3.066

8.  Fine mapping of the genic male-sterile ms 1 gene in Capsicum annuum L.

Authors:  Kyumi Jeong; Doil Choi; Jundae Lee
Journal:  Theor Appl Genet       Date:  2017-10-14       Impact factor: 5.699

9.  Mapping and identification of genetic loci affecting earliness of bolting and flowering in lettuce.

Authors:  Leah Rosental; David W Still; Youngsook You; Ryan J Hayes; Ivan Simko
Journal:  Theor Appl Genet       Date:  2021-07-01       Impact factor: 5.699

10.  High Resolution Melting (HRM) for High-Throughput Genotyping-Limitations and Caveats in Practical Case Studies.

Authors:  Marcin Słomka; Marta Sobalska-Kwapis; Monika Wachulec; Grzegorz Bartosz; Dominik Strapagiel
Journal:  Int J Mol Sci       Date:  2017-11-03       Impact factor: 5.923

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