Literature DB >> 26826680

Liquid-like behavior of chromatin.

Kazuhiro Maeshima1, Satoru Ide2, Kayo Hibino2, Masaki Sasai3.   

Abstract

Eukaryotic chromatin is a negatively charged long polymer composed of genomic DNA, histones, and various proteins. The charged property causes the chromatin structure to be dynamically changed. These dynamic changes are critical for genome functions such as gene expression because they directly govern the degree of DNA accessibility. Although the chromatin structure is not yet fully understood, currently increasing evidence suggests that chromatin has a dynamic liquid-like structure based on the 10-nm fiber but not the 30-nm fiber. This liquid-like property can drive the process of 'scanning and targeting genomic DNA,' which contributes to various genome functions including gene expression and DNA replication, repair, and recombination. Here, we discuss the liquid-like behavior of chromatin and its physical and biological relevance.
Copyright © 2015 The Authors. Published by Elsevier Ltd.. All rights reserved.

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Year:  2016        PMID: 26826680     DOI: 10.1016/j.gde.2015.11.006

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  49 in total

1.  Emergence of chromatin hierarchical loops from protein disorder and nucleosome asymmetry.

Authors:  Akshay Sridhar; Stephen E Farr; Guillem Portella; Tamar Schlick; Modesto Orozco; Rosana Collepardo-Guevara
Journal:  Proc Natl Acad Sci U S A       Date:  2020-03-12       Impact factor: 11.205

Review 2.  Contribution of advanced fluorescence nano microscopy towards revealing mitotic chromosome structure.

Authors:  S W Botchway; S Farooq; A Sajid; I K Robinson; M Yusuf
Journal:  Chromosome Res       Date:  2021-03-09       Impact factor: 5.239

3.  Molecular biology: A liquid reservoir for silent chromatin.

Authors:  Adam Klosin; Anthony A Hyman
Journal:  Nature       Date:  2017-06-21       Impact factor: 49.962

4.  Unraveling the mechanisms of chromatin fibril packaging.

Authors:  Alexey A Gavrilov; Yuri Y Shevelyov; Sergey V Ulianov; Ekaterina E Khrameeva; Pavel Kos; Alexander Chertovich; Sergey V Razin
Journal:  Nucleus       Date:  2016-05-03       Impact factor: 4.197

5.  A new class of disordered elements controls DNA replication through initiator self-assembly.

Authors:  Matthew W Parker; Maren Bell; Mustafa Mir; Jonchee A Kao; Xavier Darzacq; Michael R Botchan; James M Berger
Journal:  Elife       Date:  2019-09-27       Impact factor: 8.140

6.  Rouse model with transient intramolecular contacts on a timescale of seconds recapitulates folding and fluctuation of yeast chromosomes.

Authors:  Marius Socol; Renjie Wang; Daniel Jost; Pascal Carrivain; Cédric Vaillant; Eric Le Cam; Vincent Dahirel; Christophe Normand; Kerstin Bystricky; Jean-Marc Victor; Olivier Gadal; Aurélien Bancaud
Journal:  Nucleic Acids Res       Date:  2019-07-09       Impact factor: 16.971

Review 7.  Heterogeneous fluid-like movements of chromatin and their implications to transcription.

Authors:  S S Ashwin; Kazuhiro Maeshima; Masaki Sasai
Journal:  Biophys Rev       Date:  2020-03-23

8.  Internal Motion of Chromatin Fibers Is Governed by Dynamics of Uncompressed Linker Strands.

Authors:  Rajib Basak; William Rosencrans; Indresh Yadav; Peiyan Yan; Nikolay V Berezhnoy; Qinming Chen; Jeroen A van Kan; Lars Nordenskiöld; Anatoly Zinchenko; Johan R C van der Maarel
Journal:  Biophys J       Date:  2020-10-27       Impact factor: 4.033

Review 9.  Formation of Chromatin Subcompartments by Phase Separation.

Authors:  Fabian Erdel; Karsten Rippe
Journal:  Biophys J       Date:  2018-04-06       Impact factor: 4.033

10.  Single-molecule force spectroscopy on histone H4 tail-cross-linked chromatin reveals fiber folding.

Authors:  Artur Kaczmarczyk; Abdollah Allahverdi; Thomas B Brouwer; Lars Nordenskiöld; Nynke H Dekker; John van Noort
Journal:  J Biol Chem       Date:  2017-08-30       Impact factor: 5.157

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