Literature DB >> 26824103

MICROBIOLOGY: The strain in metagenomics.

Tal Nawy.   

Abstract

Year:  2015        PMID: 26824103     DOI: 10.1038/nmeth.3642

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


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  2 in total

1.  Detection of low-abundance bacterial strains in metagenomic datasets by eigengenome partitioning.

Authors:  Brian Cleary; Ilana Lauren Brito; Katherine Huang; Dirk Gevers; Terrance Shea; Sarah Young; Eric J Alm
Journal:  Nat Biotechnol       Date:  2015-09-14       Impact factor: 54.908

2.  ConStrains identifies microbial strains in metagenomic datasets.

Authors:  Chengwei Luo; Rob Knight; Heli Siljander; Mikael Knip; Ramnik J Xavier; Dirk Gevers
Journal:  Nat Biotechnol       Date:  2015-09-07       Impact factor: 54.908

  2 in total
  3 in total

1.  Critical Assessment of Metagenome Interpretation: the second round of challenges.

Authors:  Fernando Meyer; Adrian Fritz; Zhi-Luo Deng; David Koslicki; Till Robin Lesker; Alexey Gurevich; Gary Robertson; Mohammed Alser; Dmitry Antipov; Francesco Beghini; Denis Bertrand; Jaqueline J Brito; C Titus Brown; Jan Buchmann; Aydin Buluç; Bo Chen; Rayan Chikhi; Philip T L C Clausen; Alexandru Cristian; Piotr Wojciech Dabrowski; Aaron E Darling; Rob Egan; Eleazar Eskin; Evangelos Georganas; Eugene Goltsman; Melissa A Gray; Lars Hestbjerg Hansen; Steven Hofmeyr; Pingqin Huang; Luiz Irber; Huijue Jia; Tue Sparholt Jørgensen; Silas D Kieser; Terje Klemetsen; Axel Kola; Mikhail Kolmogorov; Anton Korobeynikov; Jason Kwan; Nathan LaPierre; Claire Lemaitre; Chenhao Li; Antoine Limasset; Fabio Malcher-Miranda; Serghei Mangul; Vanessa R Marcelino; Camille Marchet; Pierre Marijon; Dmitry Meleshko; Daniel R Mende; Alessio Milanese; Niranjan Nagarajan; Jakob Nissen; Sergey Nurk; Leonid Oliker; Lucas Paoli; Pierre Peterlongo; Vitor C Piro; Jacob S Porter; Simon Rasmussen; Evan R Rees; Knut Reinert; Bernhard Renard; Espen Mikal Robertsen; Gail L Rosen; Hans-Joachim Ruscheweyh; Varuni Sarwal; Nicola Segata; Enrico Seiler; Lizhen Shi; Fengzhu Sun; Shinichi Sunagawa; Søren Johannes Sørensen; Ashleigh Thomas; Chengxuan Tong; Mirko Trajkovski; Julien Tremblay; Gherman Uritskiy; Riccardo Vicedomini; Zhengyang Wang; Ziye Wang; Zhong Wang; Andrew Warren; Nils Peder Willassen; Katherine Yelick; Ronghui You; Georg Zeller; Zhengqiao Zhao; Shanfeng Zhu; Jie Zhu; Ruben Garrido-Oter; Petra Gastmeier; Stephane Hacquard; Susanne Häußler; Ariane Khaledi; Friederike Maechler; Fantin Mesny; Simona Radutoiu; Paul Schulze-Lefert; Nathiana Smit; Till Strowig; Andreas Bremges; Alexander Sczyrba; Alice Carolyn McHardy
Journal:  Nat Methods       Date:  2022-04-08       Impact factor: 28.547

2.  Abundance estimation and differential testing on strain level in metagenomics data.

Authors:  Martina Fischer; Benjamin Strauch; Bernhard Y Renard
Journal:  Bioinformatics       Date:  2017-07-15       Impact factor: 6.937

3.  Metagenomic binning through low-density hashing.

Authors:  Yunan Luo; Yun William Yu; Jianyang Zeng; Bonnie Berger; Jian Peng
Journal:  Bioinformatics       Date:  2019-01-15       Impact factor: 6.937

  3 in total

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