| Literature DB >> 26823947 |
Claudia Bănescu1, Mihaela Iancu2, Adrian P Trifa3, Marcela Cândea4, Erzsebet Benedek Lazar5, Valeriu G Moldovan1, Carmen Duicu6, Florin Tripon1, Andrei Crauciuc1, Minodora Dobreanu7.
Abstract
Oxidative stress might contribute to the occurrence of cancers, including the hematological ones. Various genetic polymorphisms were shown to increase the quantity of reactive oxygen species, a phenomenon that is able to induce mutations and thus promote cancers. The purpose of the study was to evaluate the association between CAT C262T, GPX1 Pro198Leu, MnSOD Ala16Val, GSTM1, GSTT1, and GSTP1 Ile105Val gene polymorphisms and acute myeloid leukemia risk, in a case-control study comprising 102 patients and 303 controls. No association was observed between AML and variant genotypes of CAT, MnSOD, GSTM1, and GSTT1 polymorphisms. Our data revealed a statistically significant difference regarding the frequencies of GPX1 Pro198Leu and GSTP1 Ile105Val variant genotypes between AML patients and controls (p < 0.001). Our results showed no association in the distribution of any of the CAT C262T, GPX1 Pro198Leu, GSTM1, GSTT1, and GSTP1 polymorphisms regarding age, gender, FAB subtype, cytogenetic risk groups, FLT3 and DNMT3 gene mutations, and overall survival. Our data suggests that the presence of variant allele and genotype of GPX1 Pro198Leu and GSTP1 Ile105Val gene polymorphisms may modulate the risk of developing AML.Entities:
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Year: 2015 PMID: 26823947 PMCID: PMC4707325 DOI: 10.1155/2016/2536705
Source DB: PubMed Journal: Oxid Med Cell Longev ISSN: 1942-0994 Impact factor: 6.543
Distribution of CAT, GPX, MnSOD, GSTP1, GSTM1, and GSTT1 genotypes among AML patients and controls.
| Polymorphism | AML patients | Controls |
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|---|---|---|---|
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| |||
| CC | 55 (53.9) | 161 (53.1) | Reference |
| CT | 41 (40.2) | 123 (40.6) | 0.985, 0.98 (0.61–1.56) |
| TT | 6 (5.9) | 19 (6.3) | 0.985, 0.92 (0.35–2.43) |
| CT + TT | 47 (46.1) | 142 (46.9) | 0.89, 0.969 (0.618–1.519) |
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| Pro/Pro | 3 (2.9) | 34 (11.2) | Reference |
| Pro/Leu | 28 (27.5) | 190 (62.7) | 0.588, 1.670 (0.480–5.80) |
| Leu/Leu | 71 (69.6) | 79 (26.1) | <0.0001, 10.186 (2.997–34.622) |
| Pro/Leu + Leu/Leu | 99 (97.1) | 269 (88.8) | 0.012, 4.171 (1.252–13.886) |
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| Ala/Ala | 24 (23.5) | 54 (17.8) | Reference |
| Ala/Val | 60 (58.8) | 168 (55.4) | 0.464, 0.803 (0.457–1.413) |
| Val/Val | 18 (17.6) | 81 (26.7) | 0.074, 0.50 (0.248–1.009) |
| Ala/Val + Val/Val | 78 (76.5) | 249 (82.2) | 0.206, 0.705 (0.409–1.214) |
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| Ile/Ile | 39 (38.2) | 205 (67.7) | Reference |
| Ile/Val | 57 (55.9) | 88 (29.0) | <0.001, 3.405 (2.111–5.491) |
| Val/Val | 6 (5.9) | 10 (3.3) | 0.0393, 3.154 (1.083–9.183) |
| Ile/Val + Val/Val | 63 (61.8) | 98 (32.3) | <0.0001, 3.379 (2.120–5.386) |
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| Present | 43 (42.2) | 125 (41.3) | Reference |
| Null | 59 (57.8) | 178 (58.7) | 0.873, 0.964 (0.612–1.518) |
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| Present | 78 (76.5) | 240 (79.2) | Reference |
| Null | 24 (23.5) | 63 (20.8) | 0.56, 1.172 (0.686–2.002) |
AML patient characteristics according to the CAT C262T, GPX1 Pro198Leu, MnSOD Ala16Val, GSTP1 Ile105Val, GSTM1,and GSTT1 genotypes.
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|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CC | CT + TT |
| Pro/Pro | Pro/Leu + Leu/Leu |
| Ala/Ala | Ala/Val + Val/Val |
| Ile/Ile | Ile/Val + Val/Val |
| Present | null |
| Present | null |
| |
| Gender | ||||||||||||||||||
| Female | 22 | 24 | Ref | 0 | 46 | Ref | 13 | 33 | Ref | 23 | 23 | Ref | 18 | 28 | Ref | 36 | 10 | Ref |
| Male | 33 | 23 | 0.264 | 3 | 53 | 0.055 | 11 | 45 | 0.308 | 16 | 40 | 0.026 | 25 | 31 | 0.574 | 42 | 14 | 0.699 |
| Age | ||||||||||||||||||
| <60 years | 37 | 31 | Ref | 1 | 67 | Ref | 17 | 51 | Ref | 24 | 44 | Ref | 24 | 44 | Ref | 53 | 15 | Ref |
| >60 years | 18 | 16 | 0.888 | 2 | 32 | 0.257 | 7 | 27 | 0.805 | 15 | 19 | 0.387 | 19 | 15 | 0.057 | 25 | 9 | 0.805 |
| Age (median, range) | ||||||||||||||||||
| <50 years | 27 | 20 | Ref | 1 | 46 | Ref | 13 | 34 | Ref | 16 | 31 | Ref | 17 | 30 | Ref | 35 | 12 | Ref |
| >50 years | 28 | 27 | 0.554 | 2 | 53 | 1.00 | 11 | 44 | 0.483 | 23 | 32 | 0.540 | 26 | 29 | 0.316 | 43 | 12 | 0.815 |
| FAB classification | 0.698 | 0.565 | 0.014 | 0.333 | 0.149 | 0.461 | ||||||||||||
| M0 | 2 | 4 | 0 | 6 | 2 | 4 | 2 | 4 | 1 | 5 | 6 | 0 | ||||||
| M1 | 15 | 10 | 2 | 23 | 2 | 23 | 10 | 15 | 10 | 15 | 18 | 7 | ||||||
| M2 | 16 | 10 | 0 | 26 | 10 | 16 | 5 | 21 | 12 | 14 | 19 | 7 | ||||||
| M3 | 2 | 1 | 0 | 3 | 1 | 2 | 1 | 2 | 1 | 2 | 3 | 0 | ||||||
| M4 | 11 | 8 | 0 | 19 | 6 | 13 | 11 | 8 | 5 | 14 | 16 | 3 | ||||||
| M5 | 6 | 9 | 1 | 14 | 0 | 15 | 6 | 9 | 11 | 4 | 10 | 5 | ||||||
| M6 | 1 | 3 | 0 | 4 | 1 | 3 | 2 | 2 | 1 | 3 | 3 | 1 | ||||||
| M7 | 2 | 2 | 0 | 4 | 2 | 2 | 2 | 2 | 2 | 2 | 3 | 1 | ||||||
| Cytogenetic risk group | 0.058 | 0.549 | 0.067 | 0.925 | 0.630 | 0.194 | ||||||||||||
| Favorable | 6 | 6 | Ref | 0 | 12 | Ref | 4 | 8 | Ref | 4 | 8 | Ref | 6 | 6 | Ref | 11 | 1 | Ref |
| Intermediate | 38 | 26 | 0.751 | 2 | 62 | 1.00 | 11 | 53 | 0.238 | 25 | 39 | 1.00 | 27 | 37 | 0.753 | 48 | 16 | 0.279 |
| Unfavorable | 2 | 8 | 0.204 | 0 | 10 | — | 5 | 5 | 0.665 | 4 | 6 | 1.00 | 3 | 7 | 0.730 | 6 | 4 | 0.136 |
| ND | 9 | 7 | 1.00 | 1 | 15 | 1.00 | 4 | 12 | 0.691 | 6 | 10 | 1.00 | 7 | 9 | 1.00 | 13 | 3 | 0.613 |
| FLT3 mutations | ||||||||||||||||||
| FLT3− | 40 | 38 | Ref | 3 | 75 | Ref | 17 | 61 | Ref | 31 | 47 | Ref | 36 | 42 | Ref | 57 | 21 | Ref |
| FLT3+ | 15 | 9 | 0.93 | 0 | 24 | 1.00 | 7 | 17 | 0.457 | 8 | 16 | 0.572 | 7 | 17 | 0.141 | 21 | 3 | 0.145 |
| DNMT3A mutations | ||||||||||||||||||
| DNMT3A− | 48 | 42 | Ref | 2 | 88 | Ref | 21 | 69 | Ref | 31 | 59 | Ref | 39 | 51 | Ref | 69 | 21 | Ref |
| DNMT3A+ | 7 | 5 | 0.744 | 1 | 11 | 0.316 | 3 | 9 | 1.00 | 8 | 4 | 0.054 | 4 | 8 | 0.510 | 9 | 3 | 1.00 |
ND: not determined; Ref: reference.
The effect of predictors on outcome variable (results from univariate logistic regression).
| Variables | Statistics |
| Crude OR | 95% CI for crude OR |
|---|---|---|---|---|
| Gender | 2,152 | 0,031 | 1,64 | 1,05–2,58 |
| CAT262 | −0,138 | 0,89 | 0,97 | 0,62–1,52 |
| MnSOD2 | −1,260 | 0,208 | 0,70 | 0,41–1.21 |
| GPX198 | 2,328 | 0,02 | 4,17 | 1,25–13,88 |
| GSTM1 | −0,160 | 0,873 | 0,96 | 0,61–1,52 |
| GSTT1 | 0,582 | 0,561 | 1,17 | 0,69–2,00 |
| GSTP1 | 5,118 | <0,001 | 3,38 | 2,12–5,39 |
Wald's test crude p values; reference categories: gender = women; CAT262 = normal; SOD2 = normal; GPX198 = normal; GSTM1 = present; GSTT1 = present; GSTP1 = present.
The final multivariate logistic model.
| Variables |
| SE |
| Adjusted OR | 95% CI for adjusted OR |
|---|---|---|---|---|---|
| Gender | 0,41 | 0,24 | 0,092 | 1,5 | 0,94–2,41 |
| SOD2 | −0,38 | 0,29 | 0,196 | 0,69 | 0,39–1,22 |
| GPX198 | 1,09 | 0,63 | 0,081 | 2,98 | 0,88–10,15 |
| GSTP1 | 1,12 | 0,24 | <0,0001 | 3,08 | 1,92–4,94 |
| Constant | −2,54 | 0,67 | 0,0001 | 0,08 | 0,02–0,26 |
Estimated unstandardized regression coefficients; SE = standard error; +Wald's test adjusted p value.
Figure 1Graphical representation of estimated effects (OR) and associated confidence interval for each factor. Note: black = 90% confidence interval of multivariable adjusted OR; grey = 95% confidence interval of multivariable adjusted OR; 0 = reference category; 1 = variant category.
Assessment of final model fit.
| Performance measure | Final predictive model | Internal validation |
|---|---|---|
| Global measure of goodness of fit | ||
| Brier | 0,17 | 0,18 |
|
| 0,13 | 0,10 |
| Discrimination | ||
| AUC = | 0,68 (0,63–0,75) | 0,67 |
| Somers' | 0,36 | 0,34 |
| Discrimination slope | 1,00 | 0,90 |
| Calibration | ||
| Hosmer-Lemeshow goodness-of-fit test ( | 6,29 (0,39) | |
| Unreliability index | −0,005 | 0,004 |
| Quality index | 0,09 | 0,06 |
| Maximal error | <0,001 | 0,04 |
| Mean squared error | 0,00061 | 0,00057 |
Evaluated by bootstrapping method (number of resampling, B = 1000); the optimism corrected indices values.
Figure 2Calibration of the nomogram for AML prediction. The horizontal axis contains the predicted probability of AML; the vertical axis described the observed probability of AML. Perfect prediction corresponds to the dashed oblique line (45°). Bars correspond to CI of estimated grouped proportions and the arrow corresponds to the cut-off of 20% risk of AML.