Literature DB >> 26821135

Drugging specific conformational states of GPCRs: challenges and opportunities for computational chemistry.

Maria Martí-Solano1, Denis Schmidt2, Peter Kolb2, Jana Selent3.   

Abstract

Current advances in structural biology for membrane proteins support the existence of multiple Gprotein-coupled receptor (GPCR) conformations. These conformations can be associated to particular receptor states with definite coupling and signaling capacities. Drugging such receptor states represents an opportunity to discover a new generation of GPCR drugs with unprecedented specificity. However, exploiting recently available structural information to develop these drugs is still challenging. In this context, computational structure-based approaches can inform such drug development. In this review, we examine the potential of these approaches and the challenges they will need to overcome to guide the rational discovery of drugs targeting specific GPCR states.
Copyright © 2016. Published by Elsevier Ltd.

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Year:  2016        PMID: 26821135     DOI: 10.1016/j.drudis.2016.01.009

Source DB:  PubMed          Journal:  Drug Discov Today        ISSN: 1359-6446            Impact factor:   7.851


  13 in total

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2.  Developing a Biased Unmatched Bivalent Ligand (BUmBL) Design Strategy to Target the GPCR Homodimer Allosteric Signaling (cAMP over β-Arrestin 2 Recruitment) Within the Melanocortin Receptors.

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Review 3.  Leveraging allostery to improve G protein-coupled receptor (GPCR)-directed therapeutics: cannabinoid receptor 1 as discovery target.

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Review 4.  A practical guide to large-scale docking.

Authors:  Brian J Bender; Stefan Gahbauer; Andreas Luttens; Jiankun Lyu; Chase M Webb; Reed M Stein; Elissa A Fink; Trent E Balius; Jens Carlsson; John J Irwin; Brian K Shoichet
Journal:  Nat Protoc       Date:  2021-09-24       Impact factor: 17.021

5.  Investigating allosteric effects on the functional dynamics of β2-adrenergic ternary complexes with enhanced-sampling simulations.

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Journal:  Chem Sci       Date:  2017-03-24       Impact factor: 9.825

Review 6.  How Do Molecular Dynamics Data Complement Static Structural Data of GPCRs.

Authors:  Mariona Torrens-Fontanals; Tomasz Maciej Stepniewski; David Aranda-García; Adrián Morales-Pastor; Brian Medel-Lacruz; Jana Selent
Journal:  Int J Mol Sci       Date:  2020-08-18       Impact factor: 5.923

7.  Exploring a new ligand binding site of G protein-coupled receptors.

Authors:  H C Stephen Chan; Jingjing Wang; Krzysztof Palczewski; Slawomir Filipek; Horst Vogel; Zhi-Jie Liu; Shuguang Yuan
Journal:  Chem Sci       Date:  2018-07-13       Impact factor: 9.825

8.  Reconstruction of apo A2A receptor activation pathways reveal ligand-competent intermediates and state-dependent cholesterol hotspots.

Authors:  Silvia Lovera; Alberto Cuzzolin; Sebastian Kelm; Gianni De Fabritiis; Zara A Sands
Journal:  Sci Rep       Date:  2019-10-02       Impact factor: 4.379

9.  Function-specific virtual screening for GPCR ligands using a combined scoring method.

Authors:  Albert J Kooistra; Henry F Vischer; Daniel McNaught-Flores; Rob Leurs; Iwan J P de Esch; Chris de Graaf
Journal:  Sci Rep       Date:  2016-06-24       Impact factor: 4.379

10.  Ligand with Two Modes of Interaction with the Dopamine D2 Receptor-An Induced-Fit Mechanism of Insurmountable Antagonism.

Authors:  Richard Ågren; Hugo Zeberg; Tomasz Maciej Stępniewski; R Benjamin Free; Sean W Reilly; Robert R Luedtke; Peter Århem; Francisco Ciruela; David R Sibley; Robert H Mach; Jana Selent; Johanna Nilsson; Kristoffer Sahlholm
Journal:  ACS Chem Neurosci       Date:  2020-09-15       Impact factor: 4.418

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