Literature DB >> 26820545

Illuminating translation with ribosome profiling spectra.

Pavel V Baranov1, Audrey M Michel1.   

Abstract

Mesh：

Year:  2016        PMID： 26820545     DOI： 10.1038/nmeth.3738

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


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  9 in total

1.  Identification of small ORFs in vertebrates using ribosome footprinting and evolutionary conservation.

Authors:  Ariel A Bazzini; Timothy G Johnstone; Romain Christiano; Sebastian D Mackowiak; Benedikt Obermayer; Elizabeth S Fleming; Charles E Vejnar; Miler T Lee; Nikolaus Rajewsky; Tobias C Walther; Antonio J Giraldez
Journal:  EMBO J       Date:  2014-04-04       Impact factor: 11.598

2.  Detecting actively translated open reading frames in ribosome profiling data.

Authors:  Lorenzo Calviello; Neelanjan Mukherjee; Emanuel Wyler; Henrik Zauber; Antje Hirsekorn; Matthias Selbach; Markus Landthaler; Benedikt Obermayer; Uwe Ohler
Journal:  Nat Methods       Date:  2015-12-14       Impact factor: 28.547

3.  Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling.

Authors:  Nicholas T Ingolia; Sina Ghaemmaghami; John R S Newman; Jonathan S Weissman
Journal:  Science       Date:  2009-02-12       Impact factor: 47.728

4.  Ribosome profiling reveals pervasive translation outside of annotated protein-coding genes.

Authors:  Nicholas T Ingolia; Gloria A Brar; Noam Stern-Ginossar; Michael S Harris; Gaëlle J S Talhouarne; Sarah E Jackson; Mark R Wills; Jonathan S Weissman
Journal:  Cell Rep       Date:  2014-08-21       Impact factor: 9.423

5.  Observation of dually decoded regions of the human genome using ribosome profiling data.

Authors:  Audrey M Michel; Kingshuk Roy Choudhury; Andrew E Firth; Nicholas T Ingolia; John F Atkins; Pavel V Baranov
Journal:  Genome Res       Date:  2012-05-16       Impact factor: 9.043

6.  Oxygen and glucose deprivation induces widespread alterations in mRNA translation within 20 minutes.

Authors:  Dmitry E Andreev; Patrick B F O'Connor; Alexander V Zhdanov; Ruslan I Dmitriev; Ivan N Shatsky; Dmitri B Papkovsky; Pavel V Baranov
Journal:  Genome Biol       Date:  2015-05-06       Impact factor: 13.583

7.  The translational landscape of fission-yeast meiosis and sporulation.

Authors:  Caia D S Duncan; Juan Mata
Journal:  Nat Struct Mol Biol       Date:  2014-06-15       Impact factor: 15.369

8.  Extensive translation of small Open Reading Frames revealed by Poly-Ribo-Seq.

Authors:  Julie L Aspden; Ying Chen Eyre-Walker; Rose J Phillips; Unum Amin; Muhammad Ali S Mumtaz; Michele Brocard; Juan-Pablo Couso
Journal:  Elife       Date:  2014-08-21       Impact factor: 8.140

9.  A Regression-Based Analysis of Ribosome-Profiling Data Reveals a Conserved Complexity to Mammalian Translation.

Authors:  Alexander P Fields; Edwin H Rodriguez; Marko Jovanovic; Noam Stern-Ginossar; Brian J Haas; Philipp Mertins; Raktima Raychowdhury; Nir Hacohen; Steven A Carr; Nicholas T Ingolia; Aviv Regev; Jonathan S Weissman
Journal:  Mol Cell       Date:  2015-12-03       Impact factor: 17.970
  9 in total
  4 in total

1.  Transcriptome-wide measurement of translation by ribosome profiling.

Authors:  Nicholas J McGlincy; Nicholas T Ingolia
Journal:  Methods       Date:  2017-06-01       Impact factor: 3.608

2.  Genome-wide Quantification of Translation in Budding Yeast by Ribosome Profiling.

Authors:  Carine Beaupere; Rosalyn B Chen; William Pelosi; Vyacheslav M Labunskyy
Journal:  J Vis Exp       Date:  2017-12-21       Impact factor: 1.424

3.  Stem cell function and stress response are controlled by protein synthesis.

Authors:  Sandra Blanco; Roberto Bandiera; Martyna Popis; Shobbir Hussain; Patrick Lombard; Jelena Aleksic; Abdulrahim Sajini; Hinal Tanna; Rosana Cortés-Garrido; Nikoletta Gkatza; Sabine Dietmann; Michaela Frye
Journal:  Nature       Date:  2016-06-16       Impact factor: 49.962

4.  De novo annotation and characterization of the translatome with ribosome profiling data.

Authors:  Zhengtao Xiao; Rongyao Huang; Xudong Xing; Yuling Chen; Haiteng Deng; Xuerui Yang
Journal:  Nucleic Acids Res       Date:  2018-06-01       Impact factor: 16.971
  4 in total

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