Literature DB >> 26820544

Genetics: profiling DNA methylation and beyond.

Vivien Marx1.   

Abstract

Mesh：

Year:  2016        PMID： 26820544     DOI： 10.1038/nmeth.3736

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


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  8 in total

1.  A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands.

Authors:  M Frommer; L E McDonald; D S Millar; C M Collis; F Watt; G W Grigg; P L Molloy; C L Paul
Journal:  Proc Natl Acad Sci U S A       Date:  1992-03-01       Impact factor: 11.205

Review 2.  Advances in the profiling of DNA modifications: cytosine methylation and beyond.

Authors:  Nongluk Plongthongkum; Dinh H Diep; Kun Zhang
Journal:  Nat Rev Genet       Date:  2014-08-27       Impact factor: 53.242

3.  Evolution in health and medicine Sackler colloquium: Stochastic epigenetic variation as a driving force of development, evolutionary adaptation, and disease.

Authors:  Andrew P Feinberg; Rafael A Irizarry
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-22       Impact factor: 11.205

4.  A sensitive approach to map genome-wide 5-hydroxymethylcytosine and 5-formylcytosine at single-base resolution.

Authors:  Zhiyi Sun; Nan Dai; Janine G Borgaro; Aine Quimby; Dapeng Sun; Ivan R Corrêa; Yu Zheng; Zhenyu Zhu; Shengxi Guan
Journal:  Mol Cell       Date:  2015-01-29       Impact factor: 17.970

5.  Single-cell DNA-methylation analysis reveals epigenetic chimerism in preimplantation embryos.

Authors:  Chanchao Lorthongpanich; Lih Feng Cheow; Sathish Balu; Stephen R Quake; Barbara B Knowles; William F Burkholder; Davor Solter; Daniel M Messerschmidt
Journal:  Science       Date:  2013-09-06       Impact factor: 47.728

6.  Quantitative sequencing of 5-methylcytosine and 5-hydroxymethylcytosine at single-base resolution.

Authors:  Michael J Booth; Miguel R Branco; Gabriella Ficz; David Oxley; Felix Krueger; Wolf Reik; Shankar Balasubramanian
Journal:  Science       Date:  2012-04-26       Impact factor: 47.728

7.  Modeling kinetic rate variation in third generation DNA sequencing data to detect putative modifications to DNA bases.

Authors:  Eric E Schadt; Onureena Banerjee; Gang Fang; Zhixing Feng; Wing H Wong; Xuegong Zhang; Andrey Kislyuk; Tyson A Clark; Khai Luong; Alona Keren-Paz; Andrew Chess; Vipin Kumar; Alice Chen-Plotkin; Neal Sondheimer; Jonas Korlach; Andrew Kasarskis
Journal:  Genome Res       Date:  2012-10-23       Impact factor: 9.043

8.  Parallel single-cell sequencing links transcriptional and epigenetic heterogeneity.

Authors:  Christof Angermueller; Stephen J Clark; Heather J Lee; Iain C Macaulay; Mabel J Teng; Tim Xiaoming Hu; Felix Krueger; Sebastien Smallwood; Chris P Ponting; Thierry Voet; Gavin Kelsey; Oliver Stegle; Wolf Reik
Journal:  Nat Methods       Date:  2016-01-11       Impact factor: 28.547
  8 in total
  3 in total

Review 1.  High-throughput sequencing offers new insights into 5-hydroxymethylcytosine.

Authors:  Alina P S Pang; Christopher Sugai; Alika K Maunakea
Journal:  Biomol Concepts       Date:  2016-06-01

2.  Detection and accurate false discovery rate control of differentially methylated regions from whole genome bisulfite sequencing.

Authors:  Keegan Korthauer; Sutirtha Chakraborty; Yuval Benjamini; Rafael A Irizarry
Journal:  Biostatistics       Date:  2019-07-01       Impact factor: 5.899

Review 3.  DNA methylation analysis in plants: review of computational tools and future perspectives.

Authors:  Jimmy Omony; Thomas Nussbaumer; Ruben Gutzat
Journal:  Brief Bioinform       Date:  2020-05-21       Impact factor: 11.622
  3 in total

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