| Literature DB >> 26819491 |
Apichaya Puangpetch1, Pongwut Suwannarat1, Montri Chamnanphol1, Napatrupron Koomdee1, Nattawat Ngamsamut2, Penkhae Limsila2, Chonlaphat Sukasem1.
Abstract
Autism is a severe neurodevelopmental disorder. Many susceptible causative genes have been identified. Most of the previous reports showed the relationship between the Human Leukocyte Antigen (HLA) gene and etiology of autism. In order to identify HLA-B alleles associated with autism in Thai population, we compared the frequency of HLA-B allele in 364 autistic subjects with 952 normal subjects by using a two-stage sequence-specific oligonucleotide probe system (PCR-SSOP) method based on flow-cytometry technology. HLA-B (⁎) 13:02 (P = 0.019, OR = 2.229), HLA-B (⁎) 38:02 (P = 0.049, OR = 1.628), HLA-B (⁎) 44:03 (P = 0.016, OR = 1.645), and HLA-B (⁎) 56:01 (P = 1.78 × 10(-4), OR = 4.927) alleles were significantly increased in autistic subjects compared with normal subjects. Moreover, we found that the HLA-B (⁎) 18:02 (P = 0.016, OR = 0.375) and HLA-B (⁎) 46:12 (P = 0.008, OR = 0.147) alleles were negatively associated with autism when compared to normal controls. Both alleles might have a protective role in disease development. In addition, four HLA-B genotypes of autistic patients had statistically significant relationship with control groups, consisting of HLA-B (⁎) 3905/(⁎) 5801 (P = 0.032, OR = 24.697), HLA-B (⁎) 2704/(⁎) 5801 (P = 0.022, OR = 6.872), HLA-B (⁎) 3501/(⁎) 4403 (P = 0.021, OR = 30.269), and HLA-B (⁎) 1801/(⁎) 4402 (P = 0.017, OR = 13.757). This is the first report on HLA-B associated with Thai autism and may serve as a marker for genetic susceptibility to autism in Thai population.Entities:
Mesh:
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Year: 2015 PMID: 26819491 PMCID: PMC4706891 DOI: 10.1155/2015/724935
Source DB: PubMed Journal: Dis Markers ISSN: 0278-0240 Impact factor: 3.434
Characteristics of autistic patients (n = 364) and normal subjects (n = 952).
| Characteristics | Autistic patients | Normal subjects |
|---|---|---|
| Age (years) | 9.17 ± 4.99 | 45.36 ± 26.15 |
| Gender | ||
| Male | 314 (86.26%) | 667 (70.06%) |
| Female | 50 (13.74%) | 285 (29.93%) |
HLA-B allele frequency in autistic children and control group.
|
| Number of individuals (%) | OR (95% CI) |
| |
|---|---|---|---|---|
| ASD | Control | |||
|
| 3 (0.41) | 19 (1.00) | 0.411 (0.121–1.391) | 0.153 |
|
| 19 (2.61) | 30 (1.58) | 1.674 (0.936–2.993) | 0.082 |
|
| 0 (0.00) | 1 (0.05) | 0.871 (0.035–21.406) | 0.933 |
|
| 0 (0.00) | 3 (0.16) | 0.373 (0.019–7.228) | 0.514 |
|
| 0 (0.00) | 1 (0.05) | 0.871 (0.035–21.406) | 0.933 |
|
| 0 (0.00) | 1 (0.05) | 0.871 (0.035–21.406) | 0.933 |
|
| 4 (0.55) | 11 (0.58) | 0.951 (0.302–2.996) | 0.931 |
|
| 0 (0.00) | 1 (0.05) | 0.871 (0.035–21.406) | 0.933 |
|
| 1 (0.14) | 1 (0.05) | 2.618 (0.164–41.906) | 0.496 |
|
| 0 (0.00) | 1 (0.05) | 0.871 (0.035–21.406) | 0.933 |
|
| 0 (0.00) | 1 (0.05) | 0.871 (0.035–21.406) | 0.933 |
|
| 40 (5.49) | 146 (7.67) | 0.700 (0.488–1.004) | 0.527 |
|
|
|
|
|
|
|
| 0 (0.00) | 1 (0.05) | 0.871 (0.035–21.406) | 0.933 |
|
| 0 (0.00) | 1 (0.05) | 0.871 (0.035–21.406) | 0.933 |
|
| 0 (0.00) | 1 (0.05) | 0.871 (0.035–21.406) | 0.933 |
|
| 0 (0.00) | 2 (0.11) | 0.522 (0.025–10.893) | 0.675 |
|
| 2 (0.27) | 0 (0.00) | 13.107 (0.629–273.362) | 0.097 |
|
| 0 (0.00) | 1 (0.05) | 0.871 (0.035–21.406) | 0.933 |
|
| 12 (1.65) | 23 (1.21) | 1.371 (0.678–2.769) | 0.379 |
|
| 55 (7.55) | 160 (8.40) | 0.891 (0.648–1.226) | 0.477 |
|
| 1 (0.14) | 0 (0.00) | 7.854 (0.319–193.017) | 0.207 |
|
| 1 (0.14) | 5 (0.26) | 0.522 (0.061–4.479) | 0.554 |
|
| 0 (0.00) | 1 (0.05) | 0.871 (0.035–21.406) | 0.933 |
|
| 1 (0.14) | 3 (0.16) | 0.872 (0.091–8.393) | 0.905 |
|
| 0 (0.00) | 7 (0.37) | 0.174 (0.010–3.044) | 0.231 |
|
| 3 (0.41) | 7 (0.37) | 1.121 (0.289–4.348) | 0.868 |
|
| 2 (0.27) | 13 (0.68) | 0.401 (0.090–1.780) | 0.229 |
|
| 1 (0.14) | 10 (0.53) | 0.261 (0.034–2.039) | 0.200 |
|
| 3 (0.41) | 4 (0.21) | 1.965 (0.439–8.804) | 0.377 |
|
| 2 (0.27) | 0 (0.00) | 13.107 (0.629–273.362) | 0.097 |
|
| 4 (0.55) | 6 (0.32) | 1.748 (0.492–6.211) | 0.388 |
|
| 0 (0.00) | 1 (0.05) | 0.871 (0.035–21.406) | 0.933 |
|
| 11 (1.51) | 27 (1.42) | 1.067 (0.526–2.161) | 0.858 |
|
| 2 (0.27) | 2 (0.11) | 2.619 (0.368–18.634) | 0.336 |
|
| 0 (0.00) | 1 (0.05) | 0.871 (0.035–21.406) | 0.933 |
|
| 1 (0.14) | 8 (0.42) | 0.326 (0.041–2.601) | 0.291 |
|
| 3 (0.41) | 22 (1.16) | 0.354 (0.106–1.186) |
|
|
| 0 (0.00) | 1 (0.05) | 0.871 (0.035–21.406) |
|
|
| 24 (3.30) | 58 (3.05) | 1.085 (0.669–1.759) |
|
|
|
|
|
|
|
|
| 0 (0.00) | 1 (0.05) | 0.871 (0.035–21.406) |
|
|
| 0 (0.00) | 1 (0.05) | 0.871 (0.035–21.406) |
|
|
| 1 (0.14) | 5 (0.26) | 0.522 (0.061–4.479) |
|
|
| 13 (1.79) | 37 (1.94) | 0.917 (0.485–1.736) |
|
|
| 12 (1.65) | 15 (0.79) | 2.111 (0.983–4.531) |
|
|
| 0 (0.00) | 1 (0.05) | 0.871 (0.035–21.406) |
|
|
| 0 (0.00) | 1 (0.05) | 0.871 (0.035–21.406) |
|
|
| 0 (0.00) | 1 (0.05) | 0.871 (0.035–21.406) |
|
|
| 14 (1.92) | 36 (1.89) | 1.017 (0.546–1.898) |
|
|
| 1 (0.14) | 2 (0.11) | 1.308 (0.118–14.449) |
|
|
| 6 (0.82) | 21 (1.10) | 0.745 (0.299–1.854) |
|
|
| 9 (1.24) | 39 (2.05) | 0.599 (0.288–1.242) |
|
|
| 1 (0.14) | 0 (0.00) | 7.854 (0.319–193.017) |
|
|
| 0 (0.00) | 1 (0.05) | 0.871 (0.035–21.406) |
|
|
| 0 (0.00) | 1 (0.05) | 0.871 (0.035–21.406) |
|
|
| 2 (0.27) | 0 (0.00) | 13.107 (0.629–273.362) |
|
|
| 4 (0.55) | 9 (0.47) | 1.163 (0.357–3.789) |
|
|
| 5 (0.69) | 4 (0.21) | 3.285 (0.879–12.267) |
|
|
|
|
|
|
|
|
| 0 (0.00) | 1 (0.05) | 0.871 (0.035–21.406) |
|
|
| 0 (0.00) | 1 (0.05) | 0.871 (0.035–21.406) |
|
|
| 0 (0.00) | 1 (0.05) | 0.871 (0.035–21.406) |
|
|
| 0 (0.00) | 1 (0.05) | 0.871 (0.035–21.406) |
|
|
| 0 (0.00) | 4 (0.21) | 0.289 (0.016–5.391) |
|
|
| 7 (0.96) | 11 (0.58) | 1.412 (0.561–3.554) |
|
|
| 0 (0.00) | 3 (0.16) | 0.373 (0.019–7.228) |
|
|
| 1 (0.14) | 2 (0.11) | 1.308 (0.118–14.449) |
|
|
| 6 (0.82) | 13 (0.68) | 1.209 (0.458–3.192) |
|
|
| 1 (0.14) | 13 (0.68) | 0.200 (0.026–1.532) |
|
|
| 1 (0.14) | 6 (0.32) | 0.435 (0.052–3.621) |
|
|
| 72 (9.89) | 155 (8.14) | 1.239 (0.923–1.661) |
|
|
| 10 (1.37) | 24 (1.26) | 1.091 (0.519–2.293) |
|
|
| 0 (0.00) | 1 (0.05) | 0.871 (0.035–21.406) |
|
|
| 5 (0.69) | 4 (0.21) | 3.285 (0.879–12.267) |
|
|
| 3 (0.41) | 11 (0.58) | 0.712 (0.198–2.559) |
|
|
| 0 (0.00) | 1 (0.05) | 0.871 (0.035–21.406) |
|
|
| 0 (0.00) | 6 (0.32) | 0.200 (0.011–3.563) |
|
|
| 0 (0.00) | 1 (0.05) | 0.871 (0.035–21.406) |
|
|
| 0 (0.00) | 2 (0.11) | 0.522 (0.025–10.893) |
|
|
| 0 (0.00) | 2 (0.11) | 0.522 (0.025–10.893) |
|
|
| 0 (0.00) | 1 (0.05) | 0.871 (0.035–21.406) |
|
|
| 0 (0.00) | 1 (0.05) | 0.871 (0.035–21.406) |
|
|
| 6 (0.82) | 11 (0.58) | 1.430 (0.527–3.881) |
|
|
|
|
|
|
|
|
| 0 (0.00) | 1 (0.05) | 0.871 (0.035–21.406) |
|
|
| 1 (0.14) | 0 (0.00) | 7.854 (0.319–193.017) |
|
|
| 86 (11.81) | 209 (10.98) | 1.086 (0.832–1.419) |
|
|
|
|
|
|
|
|
| 1 (0.14) | 0 (0.00) | 7.854 (0.319–193.017) |
|
|
| 3 (0.41) | 7 (0.37) | 1.121 (0.289–4.348) |
|
|
| 1 (0.14) | 5 (0.26) | 0.522 (0.061–4.479) |
|
|
| 0 (0.00) | 3 (0.16) | 0.373 (0.019–7.228) |
|
|
| 1 (0.14) | 2 (0.11) | 1.308 (0.118–14.449) |
|
|
| 24 (3.30) | 68 (3.57) | 0.921 (0.573–1.478) |
|
|
| 6 (0.82) | 20 (1.05) | 0.783 (0.313–1.957) |
|
|
| 1 (0.14) | 6 (0.32) | 0.435 (0.052–3.621) |
|
|
| 0 (0.00) | 3 (0.16) | 0.373 (0.019–7.228) |
|
|
| 1 (0.14) | 0 (0.00) | 7.854 (0.319–193.017) |
|
|
| 0 (0.00) | 1 (0.05) | 0.871 (0.035–21.406) |
|
|
| 0 (0.00) | 1 (0.05) | 0.871 (0.035–21.406) |
|
|
| 10 (1.37) | 48 (2.52) | 0.538 (0.271–1.070) |
|
|
| 1 (0.14) | 0 (0.00) | 7.854 (0.319–193.017) |
|
|
| 1 (0.14) | 1 (0.05) | 2.618 (0.164–41.906) |
|
|
| 0 (0.00) | 1 (0.05) | 0.871 (0.035–21.406) |
|
|
| 0 (0.00) | 3 (0.16) | 0.373 (0.019–7.228) |
|
|
| 14 (1.92) | 26 (1.37) | 1.416 (0.735–2.728) |
|
|
| 0 (0.00) | 2 (0.11) | 0.522 (0.025–10.893) |
|
|
| 0 (0.00) | 1 (0.05) | 0.871 (0.035–21.406) |
|
|
| 1 (0.14) | 0 (0.00) | 7.854 (0.319–193.017) |
|
|
| 1 (0.14) | 9 (0.47) | 0.289 (0.037–2.290) |
|
|
| 8 (1.10) | 26 (1.37) | 0.803 (0.362–1.781) | 0.588 |
|
| 0 (0.00) | 2 (0.11) | 0.522 (0.025–10.893) | 0.675 |
|
| 0 (0.00) | 1 (0.05) | 0.871 (0.035–21.406) | 0.933 |
|
| 1 (0.14) | 0 (0.00) | 7.854 (0.319–193.017) | 0.207 |
|
| 0 (0.00) | 1 (0.05) | 0.871 (0.035–21.406) | 0.933 |
|
| 0 (0.00) | 1 (0.05) | 0.871 (0.035–21.406) | 0.933 |
|
| 0 (0.00) | 1 (0.05) | 0.871 (0.035–21.406) | 0.933 |
|
|
|
|
|
|
|
| 0 (0.00) | 4 (0.21) | 0.289 (0.016–5.391) | 0.406 |
|
| 0 (0.00) | 2 (0.11) | 0.522 (0.025–10.893) | 0.675 |
|
| 0 (0.00) | 6 (0.32) | 0.200 (0.011–3.563) | 0.274 |
|
| 0 (0.00) | 1 (0.05) | 0.871 (0.035–21.406) | 0.933 |
|
| 2 (0.27) | 1 (0.05) | 5.242 (0.474–57.905) | 0.176 |
|
| 16 (2.20) | 24 (1.26) | 1.760 (0.929–3.333) | 0.083 |
|
| 1 (0.14) | 2 (0.11) | 1.308 (0.118–14.449) | 0.826 |
|
| 65 (8.93) | 163 (8.56) | 1.047 (0.775–1.415) | 0.764 |
|
| 1 (0.14) | 0 (0.00) | 7.854 (0.319–193.017) | 0.207 |
|
| 0 (0.00) | 1 (0.05) | 0.871 (0.035–21.406) | 0.933 |
|
| 0 (0.00) | 1 (0.05) | 0.871 (0.035–21.406) | 0.933 |
|
| 1 (0.14) | 0 (0.00) | 7.854 (0.319–193.017) | 0.207 |
Chi-square test.
OR: odds ratio; 95% CI: confidence interval. The bold font in table refers to significant association of alleles.
HLA-B genotype frequency in autistic patients compared with control group.
| Genotypes | ASD | Control | OR (95% CI) |
|
|---|---|---|---|---|
|
| 5 (1.38) | 1 (0.10) | 13.757 (1.602–118.158) | 0.017 |
|
| 5 (1.38) | 2 (0.20) | 6.872 (1.327–35.577) | 0.022 |
|
| 5 (1.38) | 0 (0.00) | 30.269 (1.669–548.816) | 0.021 |
|
| 4 (1.10) | 0 (0.00) | 24.697 (1.326–459.879) | 0.032 |
Chi-square test. OR: odds ratio; 95% CI: confidence interval.