Literature DB >> 26819473

BioCircos.js: an interactive Circos JavaScript library for biological data visualization on web applications.

Ya Cui1, Xiaowei Chen2, Huaxia Luo3, Zhen Fan2, Jianjun Luo3, Shunmin He4, Haiyan Yue1, Peng Zhang5, Runsheng Chen6.   

Abstract

UNLABELLED: We here present BioCircos.js, an interactive and lightweight JavaScript library especially for biological data interactive visualization. BioCircos.js facilitates the development of web-based applications for circular visualization of various biological data, such as genomic features, genetic variations, gene expression and biomolecular interactions.
AVAILABILITY AND IMPLEMENTATION: BioCircos.js and its manual are freely available online at http://bioinfo.ibp.ac.cn/biocircos/ CONTACT: rschen@ibp.ac.cn SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
© The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

Mesh:

Year:  2016        PMID: 26819473     DOI: 10.1093/bioinformatics/btw041

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  41 in total

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Authors:  Marius Alfred Dieckmann; Sebastian Beyvers; Rudel Christian Nkouamedjo-Fankep; Patrick Harald Georg Hanel; Lukas Jelonek; Jochen Blom; Alexander Goesmann
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2.  Identifying high-confidence capture Hi-C interactions using CHiCANE.

Authors:  Erle M Holgersen; Andrea Gillespie; Olivia C Leavy; Joseph S Baxter; Alisa Zvereva; Gareth Muirhead; Nichola Johnson; Orsolya Sipos; Nicola H Dryden; Laura R Broome; Yi Chen; Igor Kozin; Frank Dudbridge; Olivia Fletcher; Syed Haider
Journal:  Nat Protoc       Date:  2021-04-09       Impact factor: 13.491

3.  Long-Read cDNA Sequencing Enables a "Gene-Like" Transcript Annotation of Transposable Elements.

Authors:  Kaushik Panda; R Keith Slotkin
Journal:  Plant Cell       Date:  2020-07-09       Impact factor: 11.277

4.  Identification and Downstream Analyses of Domains Amplified in Plant Genomes: The Case of StAR-Related Lipid Transfer (START) Domains in Rice.

Authors:  Sanjeet Kumar Mahtha; Ravi Kiran Purama; Renu Kumari; Gitanjali Yadav
Journal:  Methods Mol Biol       Date:  2021

5.  OncoBase: a platform for decoding regulatory somatic mutations in human cancers.

Authors:  Xianfeng Li; Leisheng Shi; Yan Wang; Jianing Zhong; Xiaolu Zhao; Huajing Teng; Xiaohui Shi; Haonan Yang; Shasha Ruan; MingKun Li; Zhong Sheng Sun; Qimin Zhan; Fengbiao Mao
Journal:  Nucleic Acids Res       Date:  2019-01-08       Impact factor: 16.971

6.  m6ASNP: a tool for annotating genetic variants by m6A function.

Authors:  Shuai Jiang; Yubin Xie; Zhihao He; Ya Zhang; Yuli Zhao; Li Chen; Yueyuan Zheng; Yanyan Miao; Zhixiang Zuo; Jian Ren
Journal:  Gigascience       Date:  2018-05-01       Impact factor: 6.524

7.  Affinity-Restricted Memory B Cells Dominate Recall Responses to Heterologous Flaviviruses.

Authors:  Rachel Wong; Julia A Belk; Jennifer Govero; Jennifer L Uhrlaub; Dakota Reinartz; Haiyan Zhao; John M Errico; Lucas D'Souza; Tyler J Ripperger; Janko Nikolich-Zugich; Mark J Shlomchik; Ansuman T Satpathy; Daved H Fremont; Michael S Diamond; Deepta Bhattacharya
Journal:  Immunity       Date:  2020-10-02       Impact factor: 31.745

8.  Blood DNA methylation and COVID-19 outcomes.

Authors:  Joseph Balnis; Andy Madrid; Kirk J Hogan; Lisa A Drake; Hau C Chieng; Anupama Tiwari; Catherine E Vincent; Amit Chopra; Peter A Vincent; Michael D Robek; Harold A Singer; Reid S Alisch; Ariel Jaitovich
Journal:  Clin Epigenetics       Date:  2021-05-25       Impact factor: 6.551

9.  CRISPRi-mediated functional analysis of NKX2-1-binding sites in the lung.

Authors:  William D Stuart; Iris M Fink-Baldauf; Koichi Tomoshige; Minzhe Guo; Yutaka Maeda
Journal:  Commun Biol       Date:  2021-05-12

10.  Liver Transcriptome Dynamics During Hibernation Are Shaped by a Shifting Balance Between Transcription and RNA Stability.

Authors:  Austin E Gillen; Rui Fu; Kent A Riemondy; Jennifer Jager; Bin Fang; Mitchell A Lazar; Sandra L Martin
Journal:  Front Physiol       Date:  2021-05-21       Impact factor: 4.566

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