Bart Mesuere1, Toon Willems1, Felix Van der Jeugt1, Bart Devreese2, Peter Vandamme3, Peter Dawyndt1. 1. Department of Applied Mathematics, Computer Science and Statistics. 2. Laboratory for Protein Biochemistry and Biomolecular Engineering, Faculty of Sciences and. 3. Laboratory for Microbiology Faculty of Sciences, Ghent University, B-9000, Ghent, Belgium.
Abstract
UNLABELLED: Unipept is an open source web application that is designed for metaproteomics analysis with a focus on interactive datavisualization. It is underpinned by a fast index built from UniProtKB and the NCBI taxonomy that enables quick retrieval of all UniProt entries in which a given tryptic peptide occurs. Unipept version 2.4 introduced web services that provide programmatic access to the metaproteomics analysis features. This enables integration of Unipept functionality in custom applications and data processing pipelines. AVAILABILITY AND IMPLEMENTATION: The web services are freely available at http://api.unipept.ugent.be and are open sourced under the MIT license. CONTACT: Unipept@ugent.be SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
UNLABELLED: Unipept is an open source web application that is designed for metaproteomics analysis with a focus on interactive datavisualization. It is underpinned by a fast index built from UniProtKB and the NCBI taxonomy that enables quick retrieval of all UniProt entries in which a given tryptic peptide occurs. Unipept version 2.4 introduced web services that provide programmatic access to the metaproteomics analysis features. This enables integration of Unipept functionality in custom applications and data processing pipelines. AVAILABILITY AND IMPLEMENTATION: The web services are freely available at http://api.unipept.ugent.be and are open sourced under the MIT license. CONTACT: Unipept@ugent.be SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
Authors: Parth B Jariwala; Samuel J Pellock; Dennis Goldfarb; Erica W Cloer; Marta Artola; Joshua B Simpson; Aadra P Bhatt; William G Walton; Lee R Roberts; Michael B Major; Gideon J Davies; Herman S Overkleeft; Matthew R Redinbo Journal: ACS Chem Biol Date: 2019-12-12 Impact factor: 5.100
Authors: Mak A Saito; Erin M Bertrand; Megan E Duffy; David A Gaylord; Noelle A Held; William Judson Hervey; Robert L Hettich; Pratik D Jagtap; Michael G Janech; Danie B Kinkade; Dagmar H Leary; Matthew R McIlvin; Eli K Moore; Robert M Morris; Benjamin A Neely; Brook L Nunn; Jaclyn K Saunders; Adam I Shepherd; Nicholas I Symmonds; David A Walsh Journal: J Proteome Res Date: 2019-03-12 Impact factor: 4.466