Literature DB >> 26813927

Implementing and Improving Automated Electronic Tumor Molecular Profiling.

Matthew J Rioth1, David B Staggs2, Lauren Hackett2, Erich Haberman2, Mike Tod2, Mia Levy2, Jeremy Warner2.   

Abstract

Oncology practice increasingly requires the use of molecular profiling of tumors to inform the use of targeted therapeutics. However, many oncologists use third-party laboratories to perform tumor genomic testing, and these laboratories may not have electronic interfaces with the provider's electronic medical record (EMR) system. The resultant reporting mechanisms, such as plain-paper faxing, can reduce report fidelity, slow down reporting procedures for a physician's practice, and make reports less accessible. Vanderbilt University Medical Center and its genomic laboratory testing partner have collaborated to create an automated electronic reporting system that incorporates genetic testing results directly into the clinical EMR. This system was iteratively tested, and causes of failure were discovered and addressed. Most errors were attributable to data entry or typographical errors that made reports unable to be linked to the correct patient in the EMR. By providing direct feedback to providers, we were able to significantly decrease the rate of transmission errors (from 6.29% to 3.84%; P < .001). The results and lessons of 1 year of using the system and transmitting 832 tumor genomic testing reports are reported.
Copyright © 2016 by American Society of Clinical Oncology.

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Year:  2016        PMID: 26813927      PMCID: PMC4960470          DOI: 10.1200/JOP.2015.008276

Source DB:  PubMed          Journal:  J Oncol Pract        ISSN: 1554-7477            Impact factor:   3.840


  12 in total

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3.  SMART on FHIR Genomics: facilitating standardized clinico-genomic apps.

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5.  The signing of laboratory reports.

Authors:  G K McGowan
Journal:  J Clin Pathol       Date:  1974-05       Impact factor: 3.411

Review 6.  Cancer biomarkers: the role of structured data reporting.

Authors:  Ross W Simpson; Michael A Berman; Philip R Foulis; Dimitrios X G Divaris; George G Birdsong; Jaleh Mirza; Richard Moldwin; Samantha Spencer; John R Srigley; Patrick L Fitzgibbons
Journal:  Arch Pathol Lab Med       Date:  2014-10-02       Impact factor: 5.534

7.  An integrated framework for reporting clinically relevant biomarkers from paired tumor/normal genomic and transcriptomic sequencing data in support of clinical trials in personalized medicine.

Authors:  Sara Nasser; Ahmet A Kurdolgu; Tyler Izatt; Jessica Aldrich; Megan L Russell; Alexis Christoforides; Wiabhav Tembe; Jeffery A Keifer; Jason J Corneveaux; Sara A Byron; Karen M Forman; Clarice Zuccaro; Jonathan J Keats; Patricia M Lorusso; John D Carpten; Jeffrey M Trent; David W Craig
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8.  Genetic testing behavior and reporting patterns in electronic medical records for physicians trained in a primary care specialty or subspecialty.

Authors:  Jeremiah Geronimo Ronquillo; Cheng Li; William T Lester
Journal:  J Am Med Inform Assoc       Date:  2012-04-17       Impact factor: 4.497

Review 9.  Clinical analysis and interpretation of cancer genome data.

Authors:  Eliezer M Van Allen; Nikhil Wagle; Mia A Levy
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10.  Development and validation of a clinical cancer genomic profiling test based on massively parallel DNA sequencing.

Authors:  Garrett M Frampton; Alex Fichtenholtz; Geoff A Otto; Kai Wang; Sean R Downing; Jie He; Michael Schnall-Levin; Jared White; Eric M Sanford; Peter An; James Sun; Frank Juhn; Kristina Brennan; Kiel Iwanik; Ashley Maillet; Jamie Buell; Emily White; Mandy Zhao; Sohail Balasubramanian; Selmira Terzic; Tina Richards; Vera Banning; Lazaro Garcia; Kristen Mahoney; Zac Zwirko; Amy Donahue; Himisha Beltran; Juan Miguel Mosquera; Mark A Rubin; Snjezana Dogan; Cyrus V Hedvat; Michael F Berger; Lajos Pusztai; Matthias Lechner; Chris Boshoff; Mirna Jarosz; Christine Vietz; Alex Parker; Vincent A Miller; Jeffrey S Ross; John Curran; Maureen T Cronin; Philip J Stephens; Doron Lipson; Roman Yelensky
Journal:  Nat Biotechnol       Date:  2013-10-20       Impact factor: 54.908

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  2 in total

Review 1.  Integrating cancer genomic data into electronic health records.

Authors:  Jeremy L Warner; Sandeep K Jain; Mia A Levy
Journal:  Genome Med       Date:  2016-10-26       Impact factor: 11.117

2.  Pragmatic precision oncology: the secondary uses of clinical tumor molecular profiling.

Authors:  Matthew J Rioth; Ramya Thota; David B Staggs; Douglas B Johnson; Jeremy L Warner
Journal:  J Am Med Inform Assoc       Date:  2016-03-28       Impact factor: 7.942

  2 in total

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