Literature DB >> 26812494

Biocatalytic portfolio of Basidiomycota.

Claudia Schmidt-Dannert1.   

Abstract

Basidiomycota fungi have received little attention for applications in biocatalysis and biotechnology and remain greatly understudied despite their importance for carbon recycling, ecosystem functioning and medicinal properties. The steady influx of genome data has facilitated detailed studies aimed at understanding the evolution and function of fungal lignocellulose degradation. These studies and recent explorations into the secondary metabolomes have uncovered large portfolios of enzymes useful for biocatalysis and biosynthesis. This review will provide an overview of the biocatalytic repertoires of Basidiomycota characterized to date with the hope of motivation more research into the chemical toolkits of this diverse group of fungi.
Copyright © 2016 Elsevier Ltd. All rights reserved.

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Year:  2016        PMID: 26812494      PMCID: PMC4870124          DOI: 10.1016/j.cbpa.2016.01.002

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  73 in total

1.  Structural basis of substrate conversion in a new aromatic peroxygenase: cytochrome P450 functionality with benefits.

Authors:  Klaus Piontek; Eric Strittmatter; René Ullrich; Glenn Gröbe; Marek J Pecyna; Martin Kluge; Katrin Scheibner; Martin Hofrichter; Dietmar A Plattner
Journal:  J Biol Chem       Date:  2013-10-14       Impact factor: 5.157

2.  The plant cell wall-decomposing machinery underlies the functional diversity of forest fungi.

Authors:  Daniel C Eastwood; Dimitrios Floudas; Manfred Binder; Andrzej Majcherczyk; Patrick Schneider; Andrea Aerts; Fred O Asiegbu; Scott E Baker; Kerrie Barry; Mika Bendiksby; Melanie Blumentritt; Pedro M Coutinho; Dan Cullen; Ronald P de Vries; Allen Gathman; Barry Goodell; Bernard Henrissat; Katarina Ihrmark; Hävard Kauserud; Annegret Kohler; Kurt LaButti; Alla Lapidus; José L Lavin; Yong-Hwan Lee; Erika Lindquist; Walt Lilly; Susan Lucas; Emmanuelle Morin; Claude Murat; José A Oguiza; Jongsun Park; Antonio G Pisabarro; Robert Riley; Anna Rosling; Asaf Salamov; Olaf Schmidt; Jeremy Schmutz; Inger Skrede; Jan Stenlid; Ad Wiebenga; Xinfeng Xie; Ursula Kües; David S Hibbett; Dirk Hoffmeister; Nils Högberg; Francis Martin; Igor V Grigoriev; Sarah C Watkinson
Journal:  Science       Date:  2011-07-14       Impact factor: 47.728

3.  The fungi: 1, 2, 3 ... 5.1 million species?

Authors:  Meredith Blackwell
Journal:  Am J Bot       Date:  2011-03-02       Impact factor: 3.844

Review 4.  Basidiomycete DyPs: Genomic diversity, structural-functional aspects, reaction mechanism and environmental significance.

Authors:  Dolores Linde; Francisco J Ruiz-Dueñas; Elena Fernández-Fueyo; Victor Guallar; Kenneth E Hammel; Rebecca Pogni; Angel T Martínez
Journal:  Arch Biochem Biophys       Date:  2015-01-28       Impact factor: 4.013

Review 5.  Heme enzyme structure and function.

Authors:  Thomas L Poulos
Journal:  Chem Rev       Date:  2014-01-08       Impact factor: 60.622

6.  Preparation of labeled human drug metabolites and drug-drug interaction-probes with fungal peroxygenases.

Authors:  Marzena Poraj-Kobielska; Jens Atzrodt; Wolfgang Holla; Martin Sandvoss; Glenn Gröbe; Katrin Scheibner; Martin Hofrichter
Journal:  J Labelled Comp Radiopharm       Date:  2013-08-29       Impact factor: 1.921

Review 7.  Traversing the fungal terpenome.

Authors:  Maureen B Quin; Christopher M Flynn; Claudia Schmidt-Dannert
Journal:  Nat Prod Rep       Date:  2014-10       Impact factor: 13.423

8.  Epoxidation of linear, branched and cyclic alkenes catalyzed by unspecific peroxygenase.

Authors:  Sebastian Peter; Matthias Kinne; René Ullrich; Gernot Kayser; Martin Hofrichter
Journal:  Enzyme Microb Technol       Date:  2013-03-06       Impact factor: 3.493

9.  Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion.

Authors:  Diego Martinez; Jean Challacombe; Ingo Morgenstern; David Hibbett; Monika Schmoll; Christian P Kubicek; Patricia Ferreira; Francisco J Ruiz-Duenas; Angel T Martinez; Phil Kersten; Kenneth E Hammel; Amber Vanden Wymelenberg; Jill Gaskell; Erika Lindquist; Grzegorz Sabat; Sandra Splinter Bondurant; Luis F Larrondo; Paulo Canessa; Rafael Vicuna; Jagjit Yadav; Harshavardhan Doddapaneni; Venkataramanan Subramanian; Antonio G Pisabarro; José L Lavín; José A Oguiza; Emma Master; Bernard Henrissat; Pedro M Coutinho; Paul Harris; Jon Karl Magnuson; Scott E Baker; Kenneth Bruno; William Kenealy; Patrik J Hoegger; Ursula Kües; Preethi Ramaiya; Susan Lucas; Asaf Salamov; Harris Shapiro; Hank Tu; Christine L Chee; Monica Misra; Gary Xie; Sarah Teter; Debbie Yaver; Tim James; Martin Mokrejs; Martin Pospisek; Igor V Grigoriev; Thomas Brettin; Dan Rokhsar; Randy Berka; Dan Cullen
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-04       Impact factor: 11.205

10.  The genome of the Tiger Milk mushroom, Lignosus rhinocerotis, provides insights into the genetic basis of its medicinal properties.

Authors:  Hui-Yeng Y Yap; Yit-Heng Chooi; Mohd Firdaus-Raih; Shin-Yee Fung; Szu-Ting Ng; Chon-Seng Tan; Nget-Hong Tan
Journal:  BMC Genomics       Date:  2014-07-29       Impact factor: 3.969

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  11 in total

Review 1.  A roadmap for biocatalysis - functional and spatial orchestration of enzyme cascades.

Authors:  Claudia Schmidt-Dannert; Fernando Lopez-Gallego
Journal:  Microb Biotechnol       Date:  2016-07-15       Impact factor: 5.813

2.  Characterization of a Basidiomycota hydrophobin reveals the structural basis for a high-similarity Class I subdivision.

Authors:  Julie-Anne Gandier; David N Langelaan; Amy Won; Kylie O'Donnell; Julie L Grondin; Holly L Spencer; Philip Wong; Elisabeth Tillier; Christopher Yip; Steven P Smith; Emma R Master
Journal:  Sci Rep       Date:  2017-04-10       Impact factor: 4.379

3.  Bulk isolation of basidiospores from wild mushrooms by electrostatic attraction with low risk of microbial contaminations.

Authors:  Kiran Lakkireddy; Ursula Kües
Journal:  AMB Express       Date:  2017-01-25       Impact factor: 3.298

4.  Evolution and enrichment of CYP5035 in Polyporales: functionality of an understudied P450 family.

Authors:  Nico D Fessner; David R Nelson; Anton Glieder
Journal:  Appl Microbiol Biotechnol       Date:  2021-08-30       Impact factor: 4.813

5.  Late-Stage Functionalisation of Polycyclic (N-Hetero-) Aromatic Hydrocarbons by Detoxifying CYP5035S7 Monooxygenase of the White-Rot Fungus Polyporus arcularius.

Authors:  Nico D Fessner; Christopher Grimm; Wolfgang Kroutil; Anton Glieder
Journal:  Biomolecules       Date:  2021-11-17

6.  Further Biochemical Profiling of Hypholoma fasciculare Metabolome Reveals Its Chemogenetic Diversity.

Authors:  Suhad A A Al-Salihi; Ian D Bull; Raghad Al-Salhi; Paul J Gates; Kifah S M Salih; Andy M Bailey; Gary D Foster
Journal:  Front Bioeng Biotechnol       Date:  2021-05-24

Review 7.  Overview on the Biochemical Potential of Filamentous Fungi to Degrade Pharmaceutical Compounds.

Authors:  Darío R Olicón-Hernández; Jesús González-López; Elisabet Aranda
Journal:  Front Microbiol       Date:  2017-09-20       Impact factor: 5.640

Review 8.  Mycopharmaceuticals and Nutraceuticals: Promising Agents to Improve Human Well-Being and Life Quality.

Authors:  Jameel R Al-Obaidi; Nuzul Noorahya Jambari; E I Ahmad-Kamil
Journal:  J Fungi (Basel)       Date:  2021-06-24

9.  Heterologous Expression of the Unusual Terreazepine Biosynthetic Gene Cluster Reveals a Promising Approach for Identifying New Chemical Scaffolds.

Authors:  Lindsay K Caesar; Matthew T Robey; Michael Swyers; Md N Islam; Rosa Ye; Purav P Vagadia; Gary E Schiltz; Paul M Thomas; Chengcang C Wu; Neil L Kelleher; Nancy P Keller; Jin Woo Bok
Journal:  mBio       Date:  2020-08-25       Impact factor: 7.786

10.  The Termite Fungal Cultivar Termitomyces Combines Diverse Enzymes and Oxidative Reactions for Plant Biomass Conversion.

Authors:  Felix Schalk; Cene Gostinčar; Nina B Kreuzenbeck; Benjamin H Conlon; Elisabeth Sommerwerk; Patrick Rabe; Immo Burkhardt; Thomas Krüger; Olaf Kniemeyer; Axel A Brakhage; Nina Gunde-Cimerman; Z Wilhelm de Beer; Jeroen S Dickschat; Michael Poulsen; Christine Beemelmanns
Journal:  mBio       Date:  2021-06-15       Impact factor: 7.867

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