| Literature DB >> 26811784 |
Giuseppina Messina1, Roberto Cazzolla Gatti2, Angeliki Droutsa3, Martina Barchitta4, Elisa Pezzino1, Antonella Agodi4, Bianca Maria Lombardo1.
Abstract
Biological diversity analysis is among the most informative approaches to describe communities and regional species compositions. Soil ecosystems include large numbers of invertebrates, among which soil bugs (Crustacea, Isopoda, Oniscidea) play significant ecological roles. The aim of this study was to provide advices to optimize the sampling effort, to efficiently monitor the diversity of this taxon, to analyze its seasonal patterns of species composition, and ultimately to understand better the coexistence of so many species over a relatively small area. Terrestrial isopods were collected at the Natural Reserve "Saline di Trapani e Paceco" (Italy), using pitfall traps monthly monitored over 2 years. We analyzed parameters of α- and β-diversity and calculated a number of indexes and measures to disentangle diversity patterns. We also used various approaches to analyze changes in biodiversity over time, such as distributions of species abundances and accumulation and rarefaction curves. As concerns species richness and total abundance of individuals, spring resulted the best season to monitor Isopoda, to reduce sampling efforts, and to save resources without losing information, while in both years abundances were maximum between summer and autumn. This suggests that evaluations of β-diversity are maximized if samples are first collected during the spring and then between summer and autumn. Sampling during these coupled seasons allows to collect a number of species close to the γ-diversity (24 species) of the area. Finally, our results show that seasonal shifts in community composition (i.e., dynamic fluctuations in species abundances during the four seasons) may minimize competitive interactions, contribute to stabilize total abundances, and allow the coexistence of phylogenetically close species within the ecosystem.Entities:
Keywords: Accumulation–rarefaction curves; Oniscidea; sampling optimization; species abundances; α‐, β‐diversity
Year: 2015 PMID: 26811784 PMCID: PMC4716513 DOI: 10.1002/ece3.1765
Source DB: PubMed Journal: Ecol Evol ISSN: 2045-7758 Impact factor: 2.912
Species sampled in each season during the 2 years of sampling
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α‐Diversity indexes
| Season | S | N | Chao 1 | Chao 1 SD | Shannon (H) | Simpson (D) | EH | ED | Relative dominance | McNaughton dominance |
|---|---|---|---|---|---|---|---|---|---|---|
| Spring _08 | 17 | 10157 | 17.67 | 1.31 | 0.81 | 1.52 | 0.286 | 0.089 | 0.80 | 31.24 |
| Summer_08 | 12 | 3538 | 12 | 0.55 | 1.25 | 2.35 | 0.503 | 0.196 | 0.62 | 29.29 |
| Autumn_08 | 14 | 501 | 14.5 | 1.32 | 2.05 | 6.42 | 0.777 | 0.458 | 0.26 | 19.76 |
| Winter_08 | 16 | 1227 | 18.25 | 3.39 | 1.65 | 3.23 | 0.595 | 0.202 | 0.52 | 25.26 |
| Spring _09 | 21 | 3406 | 22.5 | 2.29 | 1.70 | 3.73 | 0.558 | 0.178 | 0.44 | 25.61 |
| Summer_09 | 13 | 3334 | 13 | 0.48 | 1.83 | 5.25 | 0.713 | 0.404 | 0.30 | 21.88 |
| Autumn_09 | 14 | 1038 | 19.99 | 7.19 | 1.85 | 5.08 | 0.701 | 0.363 | 0.32 | 23.70 |
| Winter_09 | 12 | 2489 | 13.5 | 2.60 | 0.60 | 1.38 | 0.241 | 0.115 | 0.84 | 32.74 |
β‐Diversity indexes
| Season 1 | Season 2 | Jaccard Classic | Sorensen Classic | Wittaker Bw | Chao‐Jaccard‐Raw Abundance‐based | Chao‐Sorensen‐Raw Abundance‐based | Morisita‐Horn | Bray–Curtis | S tot |
|---|---|---|---|---|---|---|---|---|---|
| Spring 2008 | Summer 2008 | 0.611 | 0.759 | 1.241 | 0.996 | 0.998 | 0.957 | 0.503 | 18 |
| Spring 2008 | Autumn 2008 | 0.550 | 0.710 | 1.290 | 0.997 | 0.989 | 0.355 | 0.071 | 20 |
| Spring 2008 | Winter 2008 | 0.737 | 0.848 | 1.151 | 0.993 | 0.997 | 0.226 | 0.181 | 19 |
| Summer 2008 | Autumn 2008 | 0.733 | 0.846 | 1.154 | 0.969 | 0.984 | 0.448 | 0.170 | 15 |
| Summer 2008 | Winter 2008 | 0.647 | 0.786 | 1.214 | 0.988 | 0.994 | 0.315 | 0.307 | 17 |
| Autumn 2008 | Winter 2008 | 0.667 | 0.800 | 1.200 | 0.978 | 0.989 | 0.511 | 0.487 | 18 |
| Spring 2009 | Summer 2009 | 0.545 | 0.706 | 1.294 | 0.994 | 0.997 | 0.875 | 0.702 | 22 |
| Spring 2009 | Autumn 2009 | 0.591 | 0.743 | 1.257 | 0.990 | 0.995 | 0.803 | 0.403 | 22 |
| Spring 2009 | Winter 2009 | 0.571 | 0.727 | 1.273 | 0.992 | 0.996 | 0.781 | 0.600 | 21 |
| Summer 2009 | Autumn 2009 | 0.688 | 0.815 | 1.185 | 0.995 | 0.998 | 0.859 | 0.382 | 16 |
| Summer 2009 | Winter 2009 | 0.786 | 0.880 | 1.120 | 0.996 | 0.998 | 0.576 | 0.397 | 14 |
| Autumn 2009 | Winter 2009 | 0.733 | 0.846 | 1.154 | 0.980 | 0.990 | 0.630 | 0.375 | 15 |
Figure 1Species–area curves for the four‐season assemblages of the first (A) and second year (B). On the x‐axis is shown the cumulated number of samples (resampled 100‐fold), while the number of species is represented on y‐axis.
Figure 2Coleman's rarefaction curves of the four seasons of the first (A) and second year (B). On the x‐axis is represented the cumulated number of individuals (resampled 100‐fold) and on the y‐axis the number of rarefied species.
Figure 3Empirical Cumulative Distribution Function plot of the four seasons of the first (A) and second year (B). On the abscissa are represented the cumulative relative abundances (rescaled on log10), while the species' rank (rescaled over richness) is shown on the ordinates.
Figure 4Species viability of (A) all species; (B) all species removing Armadillidium granulatum (the most abundant species); (C) rare (n TOT ≤ 100); and (D) dominant species (n TOT > 100) removing A. granulatum during the 2 years (eight seasons). On the x‐axis is represented the seasons and on the y‐axis the abundances.
Figure 5Species–abundance distributions of all species (A), rare species (n ≤ 200) (B), and dominant species (n > 200) (C) represented in the two‐year assemblages. Species are shown on the x‐axis and their order of abundance on the y‐axis.
Figure 6Rank–abundance plots of all species (A), dominant species (B) and rare species (C) observed in the 2 years of sampling. On abscissae is shown the species rank and the relative abundance of each species is shown on the ordinates (rescaled with the log 10).