Literature DB >> 26804584

Optimizing force spectroscopy by modifying commercial cantilevers: Improved stability, precision, and temporal resolution.

Devin T Edwards1, Thomas T Perkins2.   

Abstract

Atomic force microscopy (AFM)-based single-molecule force spectroscopy (SMFS) enables a wide array of studies, from measuring the strength of a ligand-receptor bond to elucidating the complex folding pathway of individual membrane proteins. Such SMFS studies and, more generally, the diverse applications of AFM across biophysics and nanotechnology are improved by enhancing data quality via improved force stability, force precision, and temporal resolution. For an advanced, small-format commercial AFM, we illustrate how these three metrics are limited by the cantilever itself rather than the larger microscope structure, and then describe three increasingly sophisticated cantilever modifications that yield enhanced data quality. First, sub-pN force precision and stability over a broad bandwidth (Δf=0.01-20Hz) is routinely achieved by removing a long (L=100μm) cantilever's gold coating. Next, this sub-pN bandwidth is extended by a factor of ∼50 to span five decades of bandwidth (Δf=0.01-1000Hz) by using a focused ion beam (FIB) to modify a shorter (L=40μm) cantilever. Finally, FIB-modifying an ultrashort (L=9μm) cantilever improves its force stability and precision while maintaining 1-μs temporal resolution. These modified ultrashort cantilevers have a reduced quality factor (Q≈0.5) and therefore do not apply a substantial (30-90pN), high-frequency force modulation to the molecule, a phenomenon that is unaccounted for in traditional SMFS analysis. Currently, there is no perfect cantilever for all applications. Optimizing AFM-based SMFS requires understanding the tradeoffs inherent to using a specific cantilever and choosing the one best suited to a particular application. Published by Elsevier Inc.

Keywords:  Atomic force microscopy; Cantilever dynamics; Focused-ion-beam modification; Protein folding; Single-molecule biophysics; Single-molecule force spectroscopy

Mesh:

Substances:

Year:  2016        PMID: 26804584     DOI: 10.1016/j.jsb.2016.01.009

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  7 in total

1.  Type III secretion system effector proteins are mechanically labile.

Authors:  Marc-André LeBlanc; Morgan R Fink; Thomas T Perkins; Marcelo C Sousa
Journal:  Proc Natl Acad Sci U S A       Date:  2021-03-23       Impact factor: 11.205

Review 2.  [Application of atomic force microscopy-based single molecule force spectroscopy in G-quadruplex studies].

Authors:  Wenjing Liu; Tong Sun; Ping Zhang; Lin Li; Junhong Lv; Bin Li
Journal:  Nan Fang Yi Ke Da Xue Xue Bao       Date:  2018-08-30

Review 3.  Transition Path Times Measured by Single-Molecule Spectroscopy.

Authors:  Hoi Sung Chung
Journal:  J Mol Biol       Date:  2017-05-25       Impact factor: 5.469

4.  Modulation of a protein-folding landscape revealed by AFM-based force spectroscopy notwithstanding instrumental limitations.

Authors:  Devin T Edwards; Marc-Andre LeBlanc; Thomas T Perkins
Journal:  Proc Natl Acad Sci U S A       Date:  2021-03-23       Impact factor: 12.779

Review 5.  Force Spectroscopy on Single Molecules of Life.

Authors:  Soumit S Mandal
Journal:  ACS Omega       Date:  2020-05-14

Review 6.  High-speed force spectroscopy: microsecond force measurements using ultrashort cantilevers.

Authors:  Claire Valotteau; Fidan Sumbul; Felix Rico
Journal:  Biophys Rev       Date:  2019-10-07

Review 7.  Biological physics by high-speed atomic force microscopy.

Authors:  Ignacio Casuso; Lorena Redondo-Morata; Felix Rico
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2020-10-26       Impact factor: 4.226

  7 in total

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