Literature DB >> 26801681

Horizontal Gene Transfer and the History of Life.

Vincent Daubin1, Gergely J Szöllősi2.   

Abstract

Microbes acquire DNA from a variety of sources. The last decades, which have seen the development of genome sequencing, have revealed that horizontal gene transfer has been a major evolutionary force that has constantly reshaped genomes throughout evolution. However, because the history of life must ultimately be deduced from gene phylogenies, the lack of methods to account for horizontal gene transfer has thrown into confusion the very concept of the tree of life. As a result, many questions remain open, but emerging methodological developments promise to use information conveyed by horizontal gene transfer that remains unexploited today.
Copyright © 2016 Cold Spring Harbor Laboratory Press; all rights reserved.

Mesh:

Year:  2016        PMID: 26801681      PMCID: PMC4817804          DOI: 10.1101/cshperspect.a018036

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Biol        ISSN: 1943-0264            Impact factor:   10.005


  72 in total

Review 1.  Lateral gene transfer and the nature of bacterial innovation.

Authors:  H Ochman; J G Lawrence; E A Groisman
Journal:  Nature       Date:  2000-05-18       Impact factor: 49.962

Review 2.  Genes lost and genes found: evolution of bacterial pathogenesis and symbiosis.

Authors:  H Ochman; N A Moran
Journal:  Science       Date:  2001-05-11       Impact factor: 47.728

3.  Evidence that eukaryotes and eocyte prokaryotes are immediate relatives.

Authors:  M C Rivera; J A Lake
Journal:  Science       Date:  1992-07-03       Impact factor: 47.728

Review 4.  Genomes as documents of evolutionary history.

Authors:  Bastien Boussau; Vincent Daubin
Journal:  Trends Ecol Evol       Date:  2009-10-31       Impact factor: 17.712

5.  Molecular archaeology of the Escherichia coli genome.

Authors:  J G Lawrence; H Ochman
Journal:  Proc Natl Acad Sci U S A       Date:  1998-08-04       Impact factor: 11.205

6.  Non-homogeneous models of sequence evolution in the Bio++ suite of libraries and programs.

Authors:  Julien Dutheil; Bastien Boussau
Journal:  BMC Evol Biol       Date:  2008-09-22       Impact factor: 3.260

7.  Evolutionary origins of genomic repertoires in bacteria.

Authors:  Emmanuelle Lerat; Vincent Daubin; Howard Ochman; Nancy A Moran
Journal:  PLoS Biol       Date:  2005-04-05       Impact factor: 8.029

8.  Complex archaea that bridge the gap between prokaryotes and eukaryotes.

Authors:  Anja Spang; Jimmy H Saw; Steffen L Jørgensen; Katarzyna Zaremba-Niedzwiedzka; Joran Martijn; Anders E Lind; Roel van Eijk; Christa Schleper; Lionel Guy; Thijs J G Ettema
Journal:  Nature       Date:  2015-05-06       Impact factor: 49.962

9.  Lateral gene transfer from the dead.

Authors:  Gergely J Szöllosi; Eric Tannier; Nicolas Lartillot; Vincent Daubin
Journal:  Syst Biol       Date:  2013-01-25       Impact factor: 15.683

10.  PhyloNet: a software package for analyzing and reconstructing reticulate evolutionary relationships.

Authors:  Cuong Than; Derek Ruths; Luay Nakhleh
Journal:  BMC Bioinformatics       Date:  2008-07-28       Impact factor: 3.169

View more
  23 in total

1.  A novel esterase DacApva from Comamonas sp. strain NyZ500 with deacetylation activity for acetylated polymer polyvinyl alcohol.

Authors:  Chao-Fan Yin; Ying Xu; Shi-Kai Deng; Wen-Long Yue; Ning-Yi Zhou
Journal:  Appl Environ Microbiol       Date:  2021-02-05       Impact factor: 4.792

2.  Cyanobacterial phylogenetic analysis based on phylogenomics approaches render evolutionary diversification and adaptation: an overview of representative orders.

Authors:  Ratna Prabha; Dhananjaya P Singh
Journal:  3 Biotech       Date:  2019-02-15       Impact factor: 2.406

Review 3.  Living Organisms Author Their Read-Write Genomes in Evolution.

Authors:  James A Shapiro
Journal:  Biology (Basel)       Date:  2017-12-06

Review 4.  Horizontal gene transfer and adaptive evolution in bacteria.

Authors:  Brian J Arnold; I-Ting Huang; William P Hanage
Journal:  Nat Rev Microbiol       Date:  2021-11-12       Impact factor: 60.633

5.  Degradation of gene silencer is essential for expression of foreign genes and bacterial colonization of the mammalian gut.

Authors:  Jeongjoon Choi; Matias Schmukler; Eduardo A Groisman
Journal:  Proc Natl Acad Sci U S A       Date:  2022-09-26       Impact factor: 12.779

6.  Natural Competence and Horizontal Gene Transfer in Campylobacter.

Authors:  Julia Carolin Golz; Kerstin Stingl
Journal:  Curr Top Microbiol Immunol       Date:  2021       Impact factor: 4.291

7.  Salmonella expresses foreign genes during infection by degrading their silencer.

Authors:  Jeongjoon Choi; Eduardo A Groisman
Journal:  Proc Natl Acad Sci U S A       Date:  2020-03-24       Impact factor: 11.205

8.  Ecological networks to unravel the routes to horizontal transposon transfers.

Authors:  Samuel Venner; Vincent Miele; Christophe Terzian; Christian Biémont; Vincent Daubin; Cédric Feschotte; Dominique Pontier
Journal:  PLoS Biol       Date:  2017-02-15       Impact factor: 8.029

9.  The complete replicons of 16 Ensifer meliloti strains offer insights into intra- and inter-replicon gene transfer, transposon-associated loci, and repeat elements.

Authors:  Matthew Nelson; Joseph Guhlin; Brendan Epstein; Peter Tiffin; Michael J Sadowsky
Journal:  Microb Genom       Date:  2018-04-19

10.  Gene transfers can date the tree of life.

Authors:  Adrián A Davín; Eric Tannier; Tom A Williams; Bastien Boussau; Vincent Daubin; Gergely J Szöllősi
Journal:  Nat Ecol Evol       Date:  2018-04-02       Impact factor: 15.460

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.