Literature DB >> 26800530

Texture Feature Extraction and Analysis for Polyp Differentiation via Computed Tomography Colonography.

Yifan Hu, Zhengrong Liang, Bowen Song, Hao Han, Perry J Pickhardt, Wei Zhu, Chaijie Duan, Hao Zhang, Matthew A Barish, Chris E Lascarides.   

Abstract

Image textures in computed tomography colonography (CTC) have great potential for differentiating non-neoplastic from neoplastic polyps and thus can advance the current CTC detection-only paradigm to a new level with diagnostic capability. However, image textures are frequently compromised, particularly in low-dose CT imaging. Furthermore, texture feature extraction may vary, depending on the polyp spatial orientation variation, resulting in variable results. To address these issues, this study proposes an adaptive approach to extract and analyze the texture features for polyp differentiation. Firstly, derivative (e.g. gradient and curvature) operations are performed on the CT intensity image to amplify the textures with adequate noise control. Then Haralick co-occurrence matrix (CM) is used to calculate texture measures along each of the 13 directions (defined by the first and second order image voxel neighbors) through the polyp volume in the intensity, gradient and curvature images. Instead of taking the mean and range of each CM measure over the 13 directions as the so-called Haralick texture features, Karhunen-Loeve transform is performed to map the 13 directions into an orthogonal coordinate system so that the resulted texture features are less dependent on the polyp orientation variation. These simple ideas for amplifying textures and stabilizing spatial variation demonstrated a significant impact for the differentiating task by experiments using 384 polyp datasets, of which 52 are non-neoplastic polyps and the rest are neoplastic polyps. By the merit of area under the curve of receiver operating characteristic, the innovative ideas achieved differentiation capability of 0.8016, indicating the CTC diagnostic feasibility.

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Year:  2016        PMID: 26800530      PMCID: PMC4891231          DOI: 10.1109/TMI.2016.2518958

Source DB:  PubMed          Journal:  IEEE Trans Med Imaging        ISSN: 0278-0062            Impact factor:   10.048


  32 in total

1.  Computed tomographic virtual colonoscopy to screen for colorectal neoplasia in asymptomatic adults.

Authors:  Perry J Pickhardt; J Richard Choi; Inku Hwang; James A Butler; Michael L Puckett; Hans A Hildebrandt; Roy K Wong; Pamela A Nugent; Pauline A Mysliwiec; William R Schindler
Journal:  N Engl J Med       Date:  2003-12-01       Impact factor: 91.245

2.  Screening for nonpolypoid colorectal neoplasms.

Authors:  Perry J Pickhardt; Bernard Levin; John H Bond
Journal:  JAMA       Date:  2008-06-18       Impact factor: 56.272

3.  Computed tomographic virtual colonoscopy computer-aided polyp detection in a screening population.

Authors:  Ronald M Summers; Jianhua Yao; Perry J Pickhardt; Marek Franaszek; Ingmar Bitter; Daniel Brickman; Vamsi Krishna; J Richard Choi
Journal:  Gastroenterology       Date:  2005-12       Impact factor: 22.682

4.  Improved curvature estimation for computer-aided detection of colonic polyps in CT colonography.

Authors:  Hongbin Zhu; Yi Fan; Hongbing Lu; Zhengrong Liang
Journal:  Acad Radiol       Date:  2011-06-11       Impact factor: 3.173

5.  Assessment of volumetric growth rates of small colorectal polyps with CT colonography: a longitudinal study of natural history.

Authors:  Perry J Pickhardt; David H Kim; B Dustin Pooler; J Louis Hinshaw; Duncan Barlow; Don Jensen; Mark Reichelderfer; Brooks D Cash
Journal:  Lancet Oncol       Date:  2013-06-07       Impact factor: 41.316

6.  Nonadenomatous polyps at CT colonography: prevalence, size distribution, and detection rates.

Authors:  Perry J Pickhardt; J Richard Choi; Inku Hwang; William R Schindler
Journal:  Radiology       Date:  2004-07-09       Impact factor: 11.105

7.  Assessment of primary colorectal cancer heterogeneity by using whole-tumor texture analysis: contrast-enhanced CT texture as a biomarker of 5-year survival.

Authors:  Francesca Ng; Balaji Ganeshan; Robert Kozarski; Kenneth A Miles; Vicky Goh
Journal:  Radiology       Date:  2012-11-14       Impact factor: 11.105

8.  Natural history of untreated colonic polyps.

Authors:  S J Stryker; B G Wolff; C E Culp; S D Libbe; D M Ilstrup; R L MacCarty
Journal:  Gastroenterology       Date:  1987-11       Impact factor: 22.682

9.  Reduction of false positives by internal features for polyp detection in CT-based virtual colonoscopy.

Authors:  Zigang Wang; Zhengrong Liang; Lihong Li; Xiang Li; Bin Li; Joseph Anderson; Donald Harrington
Journal:  Med Phys       Date:  2005-12       Impact factor: 4.071

10.  A prospective study of the prevalence of colonic neoplasms in asymptomatic patients with an age-related risk.

Authors:  D A Johnson; M S Gurney; R J Volpe; D M Jones; M M VanNess; S J Chobanian; J C Avalos; J L Buck; G Kooyman; E L Cattau
Journal:  Am J Gastroenterol       Date:  1990-08       Impact factor: 10.864

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  19 in total

1.  A dynamic lesion model for differentiation of malignant and benign pathologies.

Authors:  Weiguo Cao; Zhengrong Liang; Yongfeng Gao; Marc J Pomeroy; Fangfang Han; Almas Abbasi; Perry J Pickhardt
Journal:  Sci Rep       Date:  2021-02-10       Impact factor: 4.379

Review 2.  The Natural History of Colorectal Polyps: Overview of Predictive Static and Dynamic Features.

Authors:  Perry J Pickhardt; Bryan Dustin Pooler; David H Kim; Cesare Hassan; Kristina A Matkowskyj; Richard B Halberg
Journal:  Gastroenterol Clin North Am       Date:  2018-06-29       Impact factor: 3.806

3.  Feasibility of computed tomography texture analysis of hepatic fibrosis using dual-energy spectral detector computed tomography.

Authors:  ByukGyung Choi; In Young Choi; Sang Hoon Cha; Suk Keu Yeom; Hwan Hoon Chung; Seung Hwa Lee; Jaehyung Cha; Ju-Han Lee
Journal:  Jpn J Radiol       Date:  2020-07-14       Impact factor: 2.374

4.  Multilayer feature selection method for polyp classification via computed tomographic colonography.

Authors:  Weiguo Cao; Zhengrong Liang; Marc J Pomeroy; Kenneth Ng; Shu Zhang; Yongfeng Gao; Perry J Pickhardt; Matthew A Barish; Almas F Abbasi; Hongbing Lu
Journal:  J Med Imaging (Bellingham)       Date:  2019-12-27

5.  Constructing a tissue-specific texture prior by machine learning from previous full-dose scan for Bayesian reconstruction of current ultralow-dose CT images.

Authors:  Yongfeng Gao; Jiaxing Tan; Yongyi Shi; Siming Lu; Amit Gupta; Haifang Li; Zhengrong Liang
Journal:  J Med Imaging (Bellingham)       Date:  2020-02-25

6.  An investigation of CNN models for differentiating malignant from benign lesions using small pathologically proven datasets.

Authors:  Shu Zhang; Fangfang Han; Zhengrong Liang; Jiaxing Tan; Weiguo Cao; Yongfeng Gao; Marc Pomeroy; Kenneth Ng; Wei Hou
Journal:  Comput Med Imaging Graph       Date:  2019-08-11       Impact factor: 4.790

7.  A Task-dependent Investigation on Dose and Texture in CT Image Reconstruction.

Authors:  Yongfeng Gao; Zhengrong Liang; Hao Zhang; Jie Yang; John Ferretti; Thomas Bilfinger; Kavitha Yaddanapudi; Mark Schweitzer; Priya Bhattacharji; William Moore
Journal:  IEEE Trans Radiat Plasma Med Sci       Date:  2019-12-04

8.  Three-dimensional texture features from intensity and high-order derivative maps for the discrimination between bladder tumors and wall tissues via MRI.

Authors:  Xiaopan Xu; Xi Zhang; Qiang Tian; Guopeng Zhang; Yang Liu; Guangbin Cui; Jiang Meng; Yuxia Wu; Tianshuai Liu; Zengyue Yang; Hongbing Lu
Journal:  Int J Comput Assist Radiol Surg       Date:  2017-01-21       Impact factor: 2.924

9.  A Feasibility Study of Extracting Tissue Textures From a Previous Full-Dose CT Database as Prior Knowledge for Bayesian Reconstruction of Current Low-Dose CT Images.

Authors:  Yongfeng Gao; Zhengrong Liang; William Moore; Hao Zhang; Marc J Pomeroy; John A Ferretti; Thomas V Bilfinger; Jianhua Ma; Hongbing Lu
Journal:  IEEE Trans Med Imaging       Date:  2019-01-03       Impact factor: 10.048

10.  Expert knowledge-infused deep learning for automatic lung nodule detection.

Authors:  Jiaxing Tan; Yumei Huo; Zhengrong Liang; Lihong Li
Journal:  J Xray Sci Technol       Date:  2019       Impact factor: 1.535

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