| Literature DB >> 26798838 |
Ida Josefsson1, Susanna K Eriksson2, Håkan Rensmo2, Michael Odelius1.
Abstract
The solvation of the ruthenium(II) tris(bipyridine) ion (Entities:
Year: 2016 PMID: 26798838 PMCID: PMC4714994 DOI: 10.1063/1.4939898
Source DB: PubMed Journal: Struct Dyn ISSN: 2329-7778 Impact factor: 2.920
FIG. 1.Left: Radial distribution functions (RDFs) between the Ru(II) center in [Ru(bpy)3]2+ and halide ions in water (H2O), acetonitrile (AcCN), and ethanol (EtOH) solutions. The results from simulations with a single type of halide ions are presented as solid lines, whereas dashed lines refer to the halide mixtures. Right: RDFs between Ru(II) and Li+ for which the halide solutions are distinguished by I– (solid), Cl– (long dash), and mixed counterions (short dash).
Average number of halide ions in the RDF peaks in Figure 1 during the simulations of solutions containing either I– or Cl– (single) or both types of anions (mixed).
| H2O | ||||||
|---|---|---|---|---|---|---|
Solvent shared | Solvent separated | |||||
| Ru–ion distance | Ru–ion distance | |||||
| I– | 0.74 | 0.47 | 7.5 < | 2.22 | 1.37 | |
| Cl– | 0.15 | 0.05 | 7.1 < | 2.22 | 0.88 | |
| CH3CN | ||||||
| Solvent shared | Solvent separated | |||||
| Ru–ion distance | Ru–ion distance | |||||
| I– | 0.36 | 0.17 | 7.5 < | 1.61 | 1.31 | |
| Cl– | 0.22 | 0.05 | 7.1 < | 2.09 | 0.41 | |
| C2H5OH | ||||||
| First peak | Second peak | |||||
| Ru–ion distance | Ru–ion distance | |||||
| I– | 0.86 | 0.41 | 7.3 < | 3.35 | 1.91 | |
| Cl– | 0.39 | 0.18 | 6.9 < | 2.74 | 0.89 | |
FIG. 2.RDFs between the Ru(II) center and atoms in the solvent molecules. Left: solutions with I– anions only. Right: solutions with Cl– anions only. The shaded regions in the Ru–solvent RDFs represent the solvent site coordinating the metal in the first solvation shell: oxygen (O) or nitrogen (N). The outer boundary of the solvation shell is defined by the first minimum in the Ru–O/Ru–N RDF. The next RDF maximum, at larger distance from the metal, corresponds to the second solvation layer.
FIG. 7.Ru–solvent RDFs for solutions with I–, Cl–, and equal amounts of both halides solvated in water, ethanol, and acetonitrile.
FIG. 3.Top row: Spatial distribution functions of water oxygen (red) and hydrogen (transparent gray) versus the [Ru(bpy)3]2+ ion in aqueous solution. The first maxima in the Ru–O and Ru–H RDFs in Figure 2 correspond to the closest maximum on the isosurface (in between the ligands), while the second peak in the RDF corresponds to a region of high probability of water molecules covering the ligands. Bottom row: Isosurfaces of the spatial distribution function of water oxygen with respect to [Ru(bpy)3]2+. Left: First hydration shell. Center: first + second hydration shell. Right: first + second + third hydration shell.
FIG. 4.Spatial distribution functions in acetonitrile and ethanol solution. N in blue (left) and O in red (right).
FIG. 5.I– (violet) and Cl– (green) spatial distribution functions with respect to [Ru(bpy)3]2+ in aqueous solution together with oxygen (red) and hydrogen (light gray). Immediately above the first hydration shell of [Ru(bpy)3]2+ between the bipyridine ligands, the density of I– ions is high, whereas Cl– ions are mostly found outside the outer hydration shell above the ligands.
FIG. 6.I– (violet) and Cl– (green) spatial distribution functions with respect to [Ru(bpy)3]2+ in acetonitrile with nitrogen (blue) and ethanol with oxygen (red). Left: N, Cl, and I. Right: O, I, and Cl. The acetonitrile nitrogen and ethanol oxygen spatial distribution functions are similar to water oxygen, but the anions enter inside the second shell mainly along the C3 axis, not above the meandering ethanol chain.
Nonbonded parameters for the solute atoms.
| I– | −1.0000 | 5.40 | 0.408 |
| Cl– | −1.0000 | 4.86 | 0.168 |
| Li+ | 1.0000 | 2.37 | 0.149 |
| Ru | −1.6209 | 2.96 | 2.343 |
| N | 0.3989 | 3.25 | 0.711 |
| C2 | 0.0256 | 3.55 | 0.293 |
| C3 | −0.1748 | 3.55 | 0.293 |
| C4 | −0.0363 | 3.55 | 0.293 |
| C5 | −0.1246 | 3.55 | 0.293 |
| C6 | −0.1746 | 3.55 | 0.293 |
| H3 | 0.1748 | 2.42 | 0.126 |
| H4 | 0.1663 | 2.42 | 0.126 |
| H5 | 0.1741 | 2.42 | 0.126 |
| H6 | 0.1741 | 2.42 | 0.126 |
Nonbonded parameters for the simulated solvents.
| Q | |||
|---|---|---|---|
| Water | |||
| O | −0.8200 | 3.17 | 0.650 |
| H | 0.4100 | 0.00 | 0.000 |
| Acetonitrile | |||
| N | −0.5126 | 3.01 | 0.557 |
| CY | 0.4917 | 3.55 | 0.562 |
| CT | −0.5503 | 3.40 | 0.458 |
| HC | 0.1904 | 2.65 | 0.066 |
| Ethanol | |||
| CT | −0.1800 | 3.50 | 0.280 |
| C(O) | 0.1450 | 3.50 | 0.280 |
| HC | 0.0600 | 2.50 | 0.130 |
| OH | −0.6830 | 3.10 | 0.710 |
| HO | 0.4180 | 0.00 | 0.000 |
Bonded parameters used in the simulations of solvents.
| Water | |||
| O–H | |||
| H–H | |||
| Acetonitrile | |||
| N–CY | |||
| CY–CT | |||
| CT–HC | |||
| N–CY–CT | |||
| CY–CT–HC | |||
| HC–CT–HC | |||
| Ethanol | |||
| CT–HC | |||
| CT–CT | |||
| CT–OH | |||
| OH–HO | |||
| HC–CT–HC | |||
| HC–CT–CT | |||
| CT–CT–OH | |||
| HC–CT–OH | |||
| CT–OH–HO | |||
| HC–CT–CT–HC | |||
| HC–CT–CT–OH | |||
| CT–CT–OH–HO | |||
| HC–CT–OH–HO | |||
Morse potential.
Bonded parameters for [Ru(bpy)3]2+.
| [Ru(bpy)3]2+ | |||
|---|---|---|---|
| Ru–NC | |||
| NC–CA | |||
| CA–CA | |||
| CA–HA | |||
| NC–Ru–NC | |||
| NC–Ru–NC | |||
| Ru–NC–CA | |||
| CA–NC–CA | |||
| NC–CA–CA | |||
| CA–CA–CA | |||
| NC–CA–HA | |||
| CA–CA–HA | |||
| NC–Ru–NC–CA | Δ = 180.000° | ||
| Ru–NC–CA–CA | Δ = 0.000° | ||
| Ru–NC–CA–CA | Δ = 180.000° | ||
| CA–NC–CA–CA | Δ = 180.000° | ||
| Ru–NC–CA–HA | Δ = 180.000° | ||
| NC–CA–CA–NC | Δ = 0.000° | ||
| NC–CA–CA–HA | Δ = 180.000° | ||