Literature DB >> 26794359

Modern Analysis of Protein Folding by Differential Scanning Calorimetry.

Beatriz Ibarra-Molero1, Athi N Naganathan2, Jose M Sanchez-Ruiz3, Victor Muñoz4.   

Abstract

Differential scanning calorimetry (DSC) is a very powerful tool for investigating protein folding and stability because its experimental output reflects the energetics of all conformations that become minimally populated during thermal unfolding. Accordingly, analysis of DSC experiments with simple thermodynamic models has been key for developing our understanding of protein stability during the past five decades. The discovery of ultrafast folding proteins, which have naturally broad conformational ensembles and minimally cooperative unfolding, opens the possibility of probing the complete folding free energy landscape, including those conformations at the top of the barrier to folding, via DSC. Exploiting this opportunity requires high-quality experiments and the implementation of novel analytical methods based on statistical mechanics. Here, we cover the recent exciting developments in this front, describing the new analytical procedures in detail as well as providing experimental guidelines for performing such analysis.
© 2016 Elsevier Inc. All rights reserved.

Keywords:  Bayesian analysis; Differential scanning calorimetry; Fast folding; Free energy surfaces; Protein unfolding; Statistical mechanics

Mesh:

Year:  2015        PMID: 26794359     DOI: 10.1016/bs.mie.2015.08.027

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  18 in total

1.  Differential scanning fluorimetry based assessments of the thermal and kinetic stability of peptide-MHC complexes.

Authors:  Lance M Hellman; Liusong Yin; Yuan Wang; Sydney J Blevins; Timothy P Riley; Orrin S Belden; Timothy T Spear; Michael I Nishimura; Lawrence J Stern; Brian M Baker
Journal:  J Immunol Methods       Date:  2016-02-18       Impact factor: 2.303

2.  Refolding of Lysozyme in Glycerol as Studied by Fast Scanning Calorimetry.

Authors:  Alisa Fatkhutdinova; Timur Mukhametzyanov; Christoph Schick
Journal:  Int J Mol Sci       Date:  2022-03-02       Impact factor: 5.923

3.  Flexible Target Recognition of the Intrinsically Disordered DNA-Binding Domain of CytR Monitored by Single-Molecule Fluorescence Spectroscopy.

Authors:  Shrutarshi Mitra; Hiroyuki Oikawa; Divya Rajendran; Toshiyuki Kowada; Shin Mizukami; Athi N Naganathan; Satoshi Takahashi
Journal:  J Phys Chem B       Date:  2022-08-15       Impact factor: 3.466

4.  Engineering Order and Cooperativity in a Disordered Protein.

Authors:  Sneha Munshi; Sandhyaa Subramanian; Samyuktha Ramesh; Hemashree Golla; Divakar Kalivarathan; Madhurima Kulkarni; Luis A Campos; Ashok Sekhar; Athi N Naganathan
Journal:  Biochemistry       Date:  2019-04-30       Impact factor: 3.162

5.  Protein plasticity driven by disorder and collapse governs the heterogeneous binding of CytR to DNA.

Authors:  Sneha Munshi; Soundhararajan Gopi; Sandhyaa Subramanian; Luis A Campos; Athi N Naganathan
Journal:  Nucleic Acids Res       Date:  2018-05-04       Impact factor: 16.971

6.  Thermal Analysis of a Mixture of Ribosomal Proteins by vT-ESI-MS: Toward a Parallel Approach for Characterizing the Stabilitome.

Authors:  Tarick J El-Baba; Shannon A Raab; Rachel P Buckley; Christopher J Brown; Corinne A Lutomski; Lucas W Henderson; Daniel W Woodall; Jiangchuan Shen; Jonathan C Trinidad; Hengyao Niu; Martin F Jarrold; David H Russell; Arthur Laganowsky; David E Clemmer
Journal:  Anal Chem       Date:  2021-06-08       Impact factor: 8.008

7.  Exploration of Protein Unfolding by Modelling Calorimetry Data from Reheating.

Authors:  Stanislav Mazurenko; Antonin Kunka; Koen Beerens; Christopher M Johnson; Jiri Damborsky; Zbynek Prokop
Journal:  Sci Rep       Date:  2017-11-24       Impact factor: 4.379

8.  Tunable order-disorder continuum in protein-DNA interactions.

Authors:  Sneha Munshi; Soundhararajan Gopi; Gitanjali Asampille; Sandhyaa Subramanian; Luis A Campos; Hanudatta S Atreya; Athi N Naganathan
Journal:  Nucleic Acids Res       Date:  2018-09-28       Impact factor: 16.971

Review 9.  When fast is better: protein folding fundamentals and mechanisms from ultrafast approaches.

Authors:  Victor Muñoz; Michele Cerminara
Journal:  Biochem J       Date:  2016-09-01       Impact factor: 3.857

10.  Switching Protein Conformational Substates by Protonation and Mutation.

Authors:  Abhishek Narayan; Athi N Naganathan
Journal:  J Phys Chem B       Date:  2018-08-10       Impact factor: 2.991

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